data_6IBL # _model_server_result.job_id VZUsYIYIn3OGRosG96mhIA _model_server_result.datetime_utc '2024-11-23 09:57:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ibl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":503}' # _entry.id 6IBL # _exptl.entry_id 6IBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IBL _cell.length_a 116.65 _cell.length_b 121.12 _cell.length_c 129.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,Q,R 1 1 C,D,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 N N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 185 A CYS 114 1_555 A SG CYS 270 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 A SG CYS 263 A CYS 192 1_555 A SG CYS 269 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 B SG CYS 23 C CYS 22 1_555 B SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 C SG CYS 185 B CYS 114 1_555 C SG CYS 270 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 C SG CYS 263 B CYS 192 1_555 C SG CYS 269 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf6 D SG CYS 23 D CYS 22 1_555 D SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc1 A O CYS 263 A CYS 192 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A O ASP 266 A ASP 195 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A O CYS 269 A CYS 198 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 F NA NA . A NA 502 1_555 Q O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 C O CYS 263 B CYS 192 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 C O ASP 266 B ASP 195 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 C O CYS 269 B CYS 198 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc8 M NA NA . B NA 502 1_555 S O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc9 M NA NA . B NA 502 1_555 S O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 1 n n C9 C1 2CV sing 2 n n C12 C15 2CV sing 3 n n C15 C18 2CV sing 4 n n C18 C21 2CV sing 5 n n C21 C24 2CV sing 6 n n C24 C27 2CV sing 7 n n C27 C30 2CV sing 8 n n C30 N33 2CV sing 9 n n C30 O34 2CV doub 10 n n N33 C35 2CV sing 11 n n N33 C36 2CV sing 12 n n C35 C60 2CV sing 13 n n C36 C37 2CV sing 14 n n C37 C40 2CV sing 15 n n C37 O47 2CV sing 16 n n C40 C41 2CV sing 17 n n C40 O49 2CV sing 18 n n C41 C42 2CV sing 19 n n C41 O51 2CV sing 20 n n C42 C43 2CV sing 21 n n C42 O53 2CV sing 22 n n C43 O44 2CV sing 23 n n C60 O63 2CV sing 24 n n C1 C0 2CV sing 25 n n C9 H91C 2CV sing 26 n n C9 H92C 2CV sing 27 n n C12 H121 2CV sing 28 n n C12 H122 2CV sing 29 n n C1 H11C 2CV sing 30 n n C1 H12C 2CV sing 31 n n C15 H151 2CV sing 32 n n C15 H152 2CV sing 33 n n C18 H181 2CV sing 34 n n C18 H182 2CV sing 35 n n C21 H211 2CV sing 36 n n C21 H212 2CV sing 37 n n C24 H241 2CV sing 38 n n C24 H242 2CV sing 39 n n C27 H271 2CV sing 40 n n C27 H272 2CV sing 41 n n C35 H351 2CV sing 42 n n C35 H352 2CV sing 43 n n C36 H361 2CV sing 44 n n C36 H362 2CV sing 45 n n C60 H601 2CV sing 46 n n C60 H602 2CV sing 47 n n C37 H37 2CV sing 48 n n C40 H40 2CV sing 49 n n O47 H47 2CV sing 50 n n C41 H41 2CV sing 51 n n O49 H49 2CV sing 52 n n C42 H42 2CV sing 53 n n O51 H51 2CV sing 54 n n C43 H431 2CV sing 55 n n C43 H432 2CV sing 56 n n O53 H53 2CV sing 57 n n O44 H44 2CV sing 58 n n O63 H63 2CV sing 59 n n C0 H01C 2CV sing 60 n n C0 H02C 2CV sing 61 n n C0 H03C 2CV sing 62 n n # _atom_sites.entry_id 6IBL _atom_sites.fract_transf_matrix[1][1] 0.008573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 H98 A 1 501 401 H98 UNL . F 4 NA A 1 502 402 NA NA . G 5 2CV A 1 503 501 2CV 2CV . H 5 2CV A 1 504 502 2CV 2CV . I 5 2CV A 1 505 503 2CV 2CV . J 5 2CV A 1 506 504 2CV 2CV . K 5 2CV A 1 507 501 2CV 2CV . L 3 H98 B 1 501 401 H98 UNL . M 4 NA B 1 502 402 NA NA . N 5 2CV B 1 503 501 2CV 2CV . O 5 2CV B 1 504 503 2CV 2CV . P 5 2CV B 1 505 504 2CV 2CV . Q 6 HOH A 1 601 27 HOH HOH . Q 6 HOH A 2 602 37 HOH HOH . Q 6 HOH A 3 603 3 HOH HOH . Q 6 HOH A 4 604 26 HOH HOH . Q 6 HOH A 5 605 28 HOH HOH . Q 6 HOH A 6 606 2 HOH HOH . Q 6 HOH A 7 607 21 HOH HOH . Q 6 HOH A 8 608 403 HOH HOH . R 6 HOH C 1 201 36 HOH HOH . R 6 HOH C 2 202 38 HOH HOH . R 6 HOH C 3 203 17 HOH HOH . R 6 HOH C 4 204 22 HOH HOH . R 6 HOH C 5 205 29 HOH HOH . R 6 HOH C 6 206 11 HOH HOH . S 6 HOH B 1 601 19 HOH HOH . S 6 HOH B 2 602 13 HOH HOH . S 6 HOH B 3 603 30 HOH HOH . S 6 HOH B 4 604 25 HOH HOH . S 6 HOH B 5 605 18 HOH HOH . S 6 HOH B 6 606 15 HOH HOH . S 6 HOH B 7 607 23 HOH HOH . S 6 HOH B 8 608 403 HOH HOH . S 6 HOH B 9 609 24 HOH HOH . S 6 HOH B 10 610 12 HOH HOH . S 6 HOH B 11 611 404 HOH HOH . T 6 HOH D 1 201 8 HOH HOH . T 6 HOH D 2 202 10 HOH HOH . T 6 HOH D 3 203 31 HOH HOH . T 6 HOH D 4 204 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . N 5 -52.599 33.204 -61.913 1 77.23 ? C9 2CV 503 B 1 HETATM 2 C C12 2CV . . . N 5 -53.896 33.834 -61.458 1 79.17 ? C12 2CV 503 B 1 HETATM 3 C C15 2CV . . . N 5 -53.799 34.594 -60.161 1 78.45 ? C15 2CV 503 B 1 HETATM 4 C C18 2CV . . . N 5 -55.109 35.218 -59.709 1 75.98 ? C18 2CV 503 B 1 HETATM 5 C C21 2CV . . . N 5 -54.948 36.485 -58.901 1 73.13 ? C21 2CV 503 B 1 HETATM 6 C C24 2CV . . . N 5 -56.067 37.499 -59.075 1 72.15 ? C24 2CV 503 B 1 HETATM 7 C C27 2CV . . . N 5 -56.387 38.244 -57.822 1 76.6 ? C27 2CV 503 B 1 HETATM 8 C C30 2CV . . . N 5 -57.721 38.954 -57.847 1 80.41 ? C30 2CV 503 B 1 HETATM 9 N N33 2CV . . . N 5 -58.883 38.236 -57.911 1 84.24 ? N33 2CV 503 B 1 HETATM 10 O O34 2CV . . . N 5 -57.713 40.185 -57.79 1 76.78 ? O34 2CV 503 B 1 HETATM 11 C C35 2CV . . . N 5 -59.014 36.76 -57.796 1 82.91 ? C35 2CV 503 B 1 HETATM 12 C C36 2CV . . . N 5 -60.126 38.99 -58.159 1 81.03 ? C36 2CV 503 B 1 HETATM 13 C C37 2CV . . . N 5 -60.677 39.69 -56.918 1 85.13 ? C37 2CV 503 B 1 HETATM 14 C C40 2CV . . . N 5 -62.029 40.367 -57.129 1 91.34 ? C40 2CV 503 B 1 HETATM 15 C C41 2CV . . . N 5 -62.541 41.232 -55.97 1 97.38 ? C41 2CV 503 B 1 HETATM 16 C C42 2CV . . . N 5 -63.91 41.872 -56.229 1 103.5 ? C42 2CV 503 B 1 HETATM 17 C C43 2CV . . . N 5 -63.907 42.909 -57.337 1 112.69 ? C43 2CV 503 B 1 HETATM 18 O O44 2CV . . . N 5 -62.915 43.914 -57.139 1 120.72 ? O44 2CV 503 B 1 HETATM 19 O O47 2CV . . . N 5 -59.727 40.639 -56.417 1 78.21 ? O47 2CV 503 B 1 HETATM 20 O O49 2CV . . . N 5 -62.965 39.33 -57.384 1 97.29 ? O49 2CV 503 B 1 HETATM 21 O O51 2CV . . . N 5 -61.593 42.255 -55.686 1 103.84 ? O51 2CV 503 B 1 HETATM 22 O O53 2CV . . . N 5 -64.374 42.465 -55.015 1 99.28 ? O53 2CV 503 B 1 HETATM 23 C C60 2CV . . . N 5 -60.172 36.246 -56.954 1 81.85 ? C60 2CV 503 B 1 HETATM 24 O O63 2CV . . . N 5 -61.314 35.913 -57.735 1 78.92 ? O63 2CV 503 B 1 HETATM 25 C C1 2CV . . . N 5 -51.664 34.097 -62.687 1 75.1 ? C1 2CV 503 B 1 HETATM 26 C C0 2CV . . . N 5 -50.676 33.329 -63.526 1 72.11 ? C0 2CV 503 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #