data_6IBL
#
_model_server_result.job_id            ZbGWLZfigLMpE5wfHzQOrw 
_model_server_result.datetime_utc      '2024-11-21 14:08:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ibl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":507}' 
#
_entry.id    6IBL 
#
_exptl.entry_id    6IBL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              379.489 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEGA-10 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IBL 
_cell.length_a            116.65 
_cell.length_b            121.12 
_cell.length_c            129.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IBL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,Q,R 1 1 
C,D,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 185 A CYS 114 1_555 A SG CYS 270 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf2 A SG CYS 263 A CYS 192 1_555 A SG CYS 269 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 B SG CYS 23 C CYS 22 1_555 B SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 C SG CYS 185 B CYS 114 1_555 C SG CYS 270 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 C SG CYS 263 B CYS 192 1_555 C SG CYS 269 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf6 D SG CYS 23 D CYS 22 1_555 D SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc1 A O CYS 263 A CYS 192 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A O ASP 266 A ASP 195 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc3 A O CYS 269 A CYS 198 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc4 F NA NA . A NA 502 1_555 Q O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc5 C O CYS 263 B CYS 192 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc6 C O ASP 266 B ASP 195 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc7 C O CYS 269 B CYS 198 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc8 M NA NA . B NA 502 1_555 S O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc9 M NA NA . B NA 502 1_555 S O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'C18 H37 N O7' 
_chem_comp.formula_weight    379.489 
_chem_comp.id                2CV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEGA-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C12 2CV sing 1 n n 
C9 C1 2CV sing 2 n n 
C12 C15 2CV sing 3 n n 
C15 C18 2CV sing 4 n n 
C18 C21 2CV sing 5 n n 
C21 C24 2CV sing 6 n n 
C24 C27 2CV sing 7 n n 
C27 C30 2CV sing 8 n n 
C30 N33 2CV sing 9 n n 
C30 O34 2CV doub 10 n n 
N33 C35 2CV sing 11 n n 
N33 C36 2CV sing 12 n n 
C35 C60 2CV sing 13 n n 
C36 C37 2CV sing 14 n n 
C37 C40 2CV sing 15 n n 
C37 O47 2CV sing 16 n n 
C40 C41 2CV sing 17 n n 
C40 O49 2CV sing 18 n n 
C41 C42 2CV sing 19 n n 
C41 O51 2CV sing 20 n n 
C42 C43 2CV sing 21 n n 
C42 O53 2CV sing 22 n n 
C43 O44 2CV sing 23 n n 
C60 O63 2CV sing 24 n n 
C1 C0 2CV sing 25 n n 
C9 H91C 2CV sing 26 n n 
C9 H92C 2CV sing 27 n n 
C12 H121 2CV sing 28 n n 
C12 H122 2CV sing 29 n n 
C1 H11C 2CV sing 30 n n 
C1 H12C 2CV sing 31 n n 
C15 H151 2CV sing 32 n n 
C15 H152 2CV sing 33 n n 
C18 H181 2CV sing 34 n n 
C18 H182 2CV sing 35 n n 
C21 H211 2CV sing 36 n n 
C21 H212 2CV sing 37 n n 
C24 H241 2CV sing 38 n n 
C24 H242 2CV sing 39 n n 
C27 H271 2CV sing 40 n n 
C27 H272 2CV sing 41 n n 
C35 H351 2CV sing 42 n n 
C35 H352 2CV sing 43 n n 
C36 H361 2CV sing 44 n n 
C36 H362 2CV sing 45 n n 
C60 H601 2CV sing 46 n n 
C60 H602 2CV sing 47 n n 
C37 H37 2CV sing 48 n n 
C40 H40 2CV sing 49 n n 
O47 H47 2CV sing 50 n n 
C41 H41 2CV sing 51 n n 
O49 H49 2CV sing 52 n n 
C42 H42 2CV sing 53 n n 
O51 H51 2CV sing 54 n n 
C43 H431 2CV sing 55 n n 
C43 H432 2CV sing 56 n n 
O53 H53 2CV sing 57 n n 
O44 H44 2CV sing 58 n n 
O63 H63 2CV sing 59 n n 
C0 H01C 2CV sing 60 n n 
C0 H02C 2CV sing 61 n n 
C0 H03C 2CV sing 62 n n 
#
_atom_sites.entry_id                     6IBL 
_atom_sites.fract_transf_matrix[1][1]    0.008573 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007702 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 H98 A 1 501 401 H98 UNL . 
F 4 NA A 1 502 402 NA NA . 
G 5 2CV A 1 503 501 2CV 2CV . 
H 5 2CV A 1 504 502 2CV 2CV . 
I 5 2CV A 1 505 503 2CV 2CV . 
J 5 2CV A 1 506 504 2CV 2CV . 
K 5 2CV A 1 507 501 2CV 2CV . 
L 3 H98 B 1 501 401 H98 UNL . 
M 4 NA B 1 502 402 NA NA . 
N 5 2CV B 1 503 501 2CV 2CV . 
O 5 2CV B 1 504 503 2CV 2CV . 
P 5 2CV B 1 505 504 2CV 2CV . 
Q 6 HOH A 1 601 27 HOH HOH . 
Q 6 HOH A 2 602 37 HOH HOH . 
Q 6 HOH A 3 603 3 HOH HOH . 
Q 6 HOH A 4 604 26 HOH HOH . 
Q 6 HOH A 5 605 28 HOH HOH . 
Q 6 HOH A 6 606 2 HOH HOH . 
Q 6 HOH A 7 607 21 HOH HOH . 
Q 6 HOH A 8 608 403 HOH HOH . 
R 6 HOH C 1 201 36 HOH HOH . 
R 6 HOH C 2 202 38 HOH HOH . 
R 6 HOH C 3 203 17 HOH HOH . 
R 6 HOH C 4 204 22 HOH HOH . 
R 6 HOH C 5 205 29 HOH HOH . 
R 6 HOH C 6 206 11 HOH HOH . 
S 6 HOH B 1 601 19 HOH HOH . 
S 6 HOH B 2 602 13 HOH HOH . 
S 6 HOH B 3 603 30 HOH HOH . 
S 6 HOH B 4 604 25 HOH HOH . 
S 6 HOH B 5 605 18 HOH HOH . 
S 6 HOH B 6 606 15 HOH HOH . 
S 6 HOH B 7 607 23 HOH HOH . 
S 6 HOH B 8 608 403 HOH HOH . 
S 6 HOH B 9 609 24 HOH HOH . 
S 6 HOH B 10 610 12 HOH HOH . 
S 6 HOH B 11 611 404 HOH HOH . 
T 6 HOH D 1 201 8 HOH HOH . 
T 6 HOH D 2 202 10 HOH HOH . 
T 6 HOH D 3 203 31 HOH HOH . 
T 6 HOH D 4 204 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 2CV . . . K 5 -36.509 30.012 -33.064 1 55.4 ? C9 2CV 507 A 1 
HETATM 2 C C12 2CV . . . K 5 -37.985 30.291 -32.94 1 56.96 ? C12 2CV 507 A 1 
HETATM 3 C C15 2CV . . . K 5 -38.634 29.478 -31.866 1 57.25 ? C15 2CV 507 A 1 
HETATM 4 C C18 2CV . . . K 5 -40.11 29.226 -32.013 1 53.52 ? C18 2CV 507 A 1 
HETATM 5 C C21 2CV . . . K 5 -40.539 27.975 -31.289 1 54.12 ? C21 2CV 507 A 1 
HETATM 6 C C24 2CV . . . K 5 -41.886 28.1 -30.634 1 55.12 ? C24 2CV 507 A 1 
HETATM 7 C C27 2CV . . . K 5 -42.933 28.259 -31.629 1 58.22 ? C27 2CV 507 A 1 
HETATM 8 C C30 2CV . . . K 5 -44.278 28.157 -30.972 1 64.9 ? C30 2CV 507 A 1 
HETATM 9 N N33 2CV . . . K 5 -44.851 26.934 -30.835 1 66.37 ? N33 2CV 507 A 1 
HETATM 10 O O34 2CV . . . K 5 -44.798 29.19 -30.55 1 67.93 ? O34 2CV 507 A 1 
HETATM 11 C C35 2CV . . . K 5 -44.103 25.658 -30.732 1 62.21 ? C35 2CV 507 A 1 
HETATM 12 C C36 2CV . . . K 5 -46.324 26.927 -30.796 1 63.99 ? C36 2CV 507 A 1 
HETATM 13 C C37 2CV . . . K 5 -46.892 27.038 -29.386 1 64.14 ? C37 2CV 507 A 1 
HETATM 14 C C40 2CV . . . K 5 -48.404 26.88 -29.342 1 64.15 ? C40 2CV 507 A 1 
HETATM 15 C C41 2CV . . . K 5 -48.947 25.485 -29.669 1 64.82 ? C41 2CV 507 A 1 
HETATM 16 C C42 2CV . . . K 5 -50.411 25.287 -29.257 1 66.39 ? C42 2CV 507 A 1 
HETATM 17 C C43 2CV . . . K 5 -51.357 26.152 -30.053 1 65.41 ? C43 2CV 507 A 1 
HETATM 18 O O44 2CV . . . K 5 -52.694 25.683 -29.973 1 64 ? O44 2CV 507 A 1 
HETATM 19 O O47 2CV . . . K 5 -46.554 28.297 -28.802 1 66.57 ? O47 2CV 507 A 1 
HETATM 20 O O49 2CV . . . K 5 -48.953 27.821 -30.261 1 63.92 ? O49 2CV 507 A 1 
HETATM 21 O O51 2CV . . . K 5 -48.144 24.499 -29.028 1 61.07 ? O51 2CV 507 A 1 
HETATM 22 O O53 2CV . . . K 5 -50.601 25.58 -27.872 1 71.34 ? O53 2CV 507 A 1 
HETATM 23 C C60 2CV . . . K 5 -44.9 24.385 -30.915 1 63.78 ? C60 2CV 507 A 1 
HETATM 24 O O63 2CV . . . K 5 -45.796 24.175 -29.841 1 59.37 ? O63 2CV 507 A 1 
HETATM 25 C C1 2CV . . . K 5 -36.148 28.765 -33.857 1 51.45 ? C1 2CV 507 A 1 
HETATM 26 C C0 2CV . . . K 5 -34.681 28.401 -33.813 1 50.37 ? C0 2CV 507 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#