data_6IBO # _model_server_result.job_id MsiZ_Bj3tR1EljkF-X3T6Q _model_server_result.datetime_utc '2024-11-27 14:04:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ibo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 6IBO # _exptl.entry_id 6IBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IBO _cell.length_a 137.737 _cell.length_b 150.617 _cell.length_c 199.996 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 328 n n P O2 PO4 sing 329 n n P O3 PO4 sing 330 n n P O4 PO4 sing 331 n n # _atom_sites.entry_id 6IBO _atom_sites.fract_transf_matrix[1][1] 0.00726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 12V A 1 1101 1 12V U5G . D 4 PO4 A 1 1102 335 PO4 PO4 . E 4 PO4 A 1 1103 336 PO4 PO4 . F 5 HOH A 1 1201 162 HOH HOH . F 5 HOH A 2 1202 240 HOH HOH . F 5 HOH A 3 1203 95 HOH HOH . F 5 HOH A 4 1204 305 HOH HOH . F 5 HOH A 5 1205 56 HOH HOH . F 5 HOH A 6 1206 286 HOH HOH . F 5 HOH A 7 1207 98 HOH HOH . F 5 HOH A 8 1208 165 HOH HOH . F 5 HOH A 9 1209 268 HOH HOH . F 5 HOH A 10 1210 199 HOH HOH . F 5 HOH A 11 1211 110 HOH HOH . F 5 HOH A 12 1212 8 HOH HOH . F 5 HOH A 13 1213 251 HOH HOH . F 5 HOH A 14 1214 243 HOH HOH . F 5 HOH A 15 1215 27 HOH HOH . F 5 HOH A 16 1216 108 HOH HOH . F 5 HOH A 17 1217 12 HOH HOH . F 5 HOH A 18 1218 30 HOH HOH . F 5 HOH A 19 1219 323 HOH HOH . F 5 HOH A 20 1220 231 HOH HOH . F 5 HOH A 21 1221 65 HOH HOH . F 5 HOH A 22 1222 62 HOH HOH . F 5 HOH A 23 1223 198 HOH HOH . F 5 HOH A 24 1224 178 HOH HOH . F 5 HOH A 25 1225 325 HOH HOH . F 5 HOH A 26 1226 260 HOH HOH . F 5 HOH A 27 1227 155 HOH HOH . F 5 HOH A 28 1228 222 HOH HOH . F 5 HOH A 29 1229 72 HOH HOH . F 5 HOH A 30 1230 96 HOH HOH . F 5 HOH A 31 1231 304 HOH HOH . F 5 HOH A 32 1232 229 HOH HOH . F 5 HOH A 33 1233 150 HOH HOH . F 5 HOH A 34 1234 328 HOH HOH . F 5 HOH A 35 1235 34 HOH HOH . F 5 HOH A 36 1236 262 HOH HOH . F 5 HOH A 37 1237 54 HOH HOH . F 5 HOH A 38 1238 200 HOH HOH . F 5 HOH A 39 1239 153 HOH HOH . F 5 HOH A 40 1240 287 HOH HOH . F 5 HOH A 41 1241 159 HOH HOH . F 5 HOH A 42 1242 147 HOH HOH . F 5 HOH A 43 1243 212 HOH HOH . F 5 HOH A 44 1244 223 HOH HOH . F 5 HOH A 45 1245 35 HOH HOH . F 5 HOH A 46 1246 45 HOH HOH . F 5 HOH A 47 1247 160 HOH HOH . F 5 HOH A 48 1248 283 HOH HOH . F 5 HOH A 49 1249 275 HOH HOH . F 5 HOH A 50 1250 2 HOH HOH . F 5 HOH A 51 1251 220 HOH HOH . F 5 HOH A 52 1252 18 HOH HOH . F 5 HOH A 53 1253 224 HOH HOH . F 5 HOH A 54 1254 144 HOH HOH . F 5 HOH A 55 1255 149 HOH HOH . F 5 HOH A 56 1256 51 HOH HOH . F 5 HOH A 57 1257 21 HOH HOH . F 5 HOH A 58 1258 20 HOH HOH . F 5 HOH A 59 1259 36 HOH HOH . F 5 HOH A 60 1260 215 HOH HOH . F 5 HOH A 61 1261 219 HOH HOH . F 5 HOH A 62 1262 57 HOH HOH . F 5 HOH A 63 1263 170 HOH HOH . F 5 HOH A 64 1264 228 HOH HOH . F 5 HOH A 65 1265 206 HOH HOH . F 5 HOH A 66 1266 74 HOH HOH . F 5 HOH A 67 1267 19 HOH HOH . F 5 HOH A 68 1268 265 HOH HOH . F 5 HOH A 69 1269 40 HOH HOH . F 5 HOH A 70 1270 227 HOH HOH . F 5 HOH A 71 1271 52 HOH HOH . F 5 HOH A 72 1272 82 HOH HOH . F 5 HOH A 73 1273 16 HOH HOH . F 5 HOH A 74 1274 264 HOH HOH . F 5 HOH A 75 1275 250 HOH HOH . F 5 HOH A 76 1276 10 HOH HOH . F 5 HOH A 77 1277 47 HOH HOH . F 5 HOH A 78 1278 166 HOH HOH . F 5 HOH A 79 1279 239 HOH HOH . F 5 HOH A 80 1280 99 HOH HOH . F 5 HOH A 81 1281 267 HOH HOH . F 5 HOH A 82 1282 230 HOH HOH . F 5 HOH A 83 1283 5 HOH HOH . F 5 HOH A 84 1284 28 HOH HOH . F 5 HOH A 85 1285 73 HOH HOH . F 5 HOH A 86 1286 55 HOH HOH . F 5 HOH A 87 1287 151 HOH HOH . F 5 HOH A 88 1288 29 HOH HOH . F 5 HOH A 89 1289 246 HOH HOH . F 5 HOH A 90 1290 50 HOH HOH . F 5 HOH A 91 1291 91 HOH HOH . F 5 HOH A 92 1292 146 HOH HOH . F 5 HOH A 93 1293 37 HOH HOH . F 5 HOH A 94 1294 186 HOH HOH . F 5 HOH A 95 1295 59 HOH HOH . F 5 HOH A 96 1296 14 HOH HOH . F 5 HOH A 97 1297 244 HOH HOH . F 5 HOH A 98 1298 261 HOH HOH . F 5 HOH A 99 1299 3 HOH HOH . F 5 HOH A 100 1300 236 HOH HOH . F 5 HOH A 101 1301 94 HOH HOH . F 5 HOH A 102 1302 288 HOH HOH . F 5 HOH A 103 1303 188 HOH HOH . F 5 HOH A 104 1304 32 HOH HOH . F 5 HOH A 105 1305 249 HOH HOH . F 5 HOH A 106 1306 60 HOH HOH . F 5 HOH A 107 1307 104 HOH HOH . F 5 HOH A 108 1308 255 HOH HOH . F 5 HOH A 109 1309 158 HOH HOH . F 5 HOH A 110 1310 68 HOH HOH . F 5 HOH A 111 1311 42 HOH HOH . F 5 HOH A 112 1312 242 HOH HOH . F 5 HOH A 113 1313 78 HOH HOH . F 5 HOH A 114 1314 97 HOH HOH . F 5 HOH A 115 1315 63 HOH HOH . F 5 HOH A 116 1316 49 HOH HOH . F 5 HOH A 117 1317 322 HOH HOH . F 5 HOH A 118 1318 152 HOH HOH . F 5 HOH A 119 1319 180 HOH HOH . F 5 HOH A 120 1320 202 HOH HOH . F 5 HOH A 121 1321 181 HOH HOH . F 5 HOH A 122 1322 1 HOH HOH . F 5 HOH A 123 1323 44 HOH HOH . F 5 HOH A 124 1324 41 HOH HOH . F 5 HOH A 125 1325 83 HOH HOH . F 5 HOH A 126 1326 241 HOH HOH . F 5 HOH A 127 1327 312 HOH HOH . F 5 HOH A 128 1328 38 HOH HOH . F 5 HOH A 129 1329 310 HOH HOH . F 5 HOH A 130 1330 179 HOH HOH . F 5 HOH A 131 1331 263 HOH HOH . F 5 HOH A 132 1332 67 HOH HOH . F 5 HOH A 133 1333 252 HOH HOH . F 5 HOH A 134 1334 15 HOH HOH . F 5 HOH A 135 1335 157 HOH HOH . F 5 HOH A 136 1336 6 HOH HOH . F 5 HOH A 137 1337 7 HOH HOH . F 5 HOH A 138 1338 143 HOH HOH . F 5 HOH A 139 1339 81 HOH HOH . F 5 HOH A 140 1340 173 HOH HOH . F 5 HOH A 141 1341 276 HOH HOH . F 5 HOH A 142 1342 4 HOH HOH . F 5 HOH A 143 1343 156 HOH HOH . F 5 HOH A 144 1344 208 HOH HOH . F 5 HOH A 145 1345 13 HOH HOH . F 5 HOH A 146 1346 46 HOH HOH . F 5 HOH A 147 1347 90 HOH HOH . F 5 HOH A 148 1348 132 HOH HOH . F 5 HOH A 149 1349 48 HOH HOH . F 5 HOH A 150 1350 75 HOH HOH . F 5 HOH A 151 1351 9 HOH HOH . F 5 HOH A 152 1352 133 HOH HOH . F 5 HOH A 153 1353 86 HOH HOH . F 5 HOH A 154 1354 53 HOH HOH . F 5 HOH A 155 1355 216 HOH HOH . F 5 HOH A 156 1356 172 HOH HOH . F 5 HOH A 157 1357 39 HOH HOH . F 5 HOH A 158 1358 103 HOH HOH . F 5 HOH A 159 1359 24 HOH HOH . F 5 HOH A 160 1360 280 HOH HOH . F 5 HOH A 161 1361 33 HOH HOH . F 5 HOH A 162 1362 232 HOH HOH . F 5 HOH A 163 1363 319 HOH HOH . F 5 HOH A 164 1364 80 HOH HOH . F 5 HOH A 165 1365 185 HOH HOH . F 5 HOH A 166 1366 119 HOH HOH . F 5 HOH A 167 1367 89 HOH HOH . F 5 HOH A 168 1368 148 HOH HOH . F 5 HOH A 169 1369 107 HOH HOH . F 5 HOH A 170 1370 329 HOH HOH . F 5 HOH A 171 1371 111 HOH HOH . F 5 HOH A 172 1372 76 HOH HOH . F 5 HOH A 173 1373 254 HOH HOH . F 5 HOH A 174 1374 17 HOH HOH . F 5 HOH A 175 1375 109 HOH HOH . F 5 HOH A 176 1376 100 HOH HOH . F 5 HOH A 177 1377 31 HOH HOH . F 5 HOH A 178 1378 277 HOH HOH . F 5 HOH A 179 1379 137 HOH HOH . F 5 HOH A 180 1380 247 HOH HOH . F 5 HOH A 181 1381 92 HOH HOH . F 5 HOH A 182 1382 26 HOH HOH . F 5 HOH A 183 1383 101 HOH HOH . F 5 HOH A 184 1384 66 HOH HOH . F 5 HOH A 185 1385 25 HOH HOH . F 5 HOH A 186 1386 300 HOH HOH . F 5 HOH A 187 1387 70 HOH HOH . F 5 HOH A 188 1388 167 HOH HOH . F 5 HOH A 189 1389 77 HOH HOH . F 5 HOH A 190 1390 64 HOH HOH . F 5 HOH A 191 1391 23 HOH HOH . F 5 HOH A 192 1392 273 HOH HOH . F 5 HOH A 193 1393 205 HOH HOH . F 5 HOH A 194 1394 69 HOH HOH . F 5 HOH A 195 1395 11 HOH HOH . F 5 HOH A 196 1396 84 HOH HOH . F 5 HOH A 197 1397 284 HOH HOH . F 5 HOH A 198 1398 285 HOH HOH . F 5 HOH A 199 1399 71 HOH HOH . F 5 HOH A 200 1400 154 HOH HOH . F 5 HOH A 201 1401 22 HOH HOH . F 5 HOH A 202 1402 217 HOH HOH . F 5 HOH A 203 1403 225 HOH HOH . F 5 HOH A 204 1404 309 HOH HOH . F 5 HOH A 205 1405 189 HOH HOH . F 5 HOH A 206 1406 333 HOH HOH . F 5 HOH A 207 1407 317 HOH HOH . F 5 HOH A 208 1408 131 HOH HOH . F 5 HOH A 209 1409 120 HOH HOH . F 5 HOH A 210 1410 271 HOH HOH . F 5 HOH A 211 1411 196 HOH HOH . F 5 HOH A 212 1412 105 HOH HOH . F 5 HOH A 213 1413 88 HOH HOH . F 5 HOH A 214 1414 190 HOH HOH . F 5 HOH A 215 1415 301 HOH HOH . F 5 HOH A 216 1416 177 HOH HOH . F 5 HOH A 217 1417 298 HOH HOH . F 5 HOH A 218 1418 191 HOH HOH . F 5 HOH A 219 1419 114 HOH HOH . F 5 HOH A 220 1420 327 HOH HOH . F 5 HOH A 221 1421 293 HOH HOH . F 5 HOH A 222 1422 289 HOH HOH . F 5 HOH A 223 1423 295 HOH HOH . F 5 HOH A 224 1424 195 HOH HOH . F 5 HOH A 225 1425 253 HOH HOH . F 5 HOH A 226 1426 106 HOH HOH . F 5 HOH A 227 1427 303 HOH HOH . F 5 HOH A 228 1428 274 HOH HOH . F 5 HOH A 229 1429 163 HOH HOH . F 5 HOH A 230 1430 299 HOH HOH . F 5 HOH A 231 1431 269 HOH HOH . F 5 HOH A 232 1432 281 HOH HOH . F 5 HOH A 233 1433 171 HOH HOH . F 5 HOH A 234 1434 235 HOH HOH . F 5 HOH A 235 1435 87 HOH HOH . F 5 HOH A 236 1436 308 HOH HOH . F 5 HOH A 237 1437 145 HOH HOH . F 5 HOH A 238 1438 102 HOH HOH . F 5 HOH A 239 1439 61 HOH HOH . F 5 HOH A 240 1440 234 HOH HOH . F 5 HOH A 241 1441 272 HOH HOH . F 5 HOH A 242 1442 187 HOH HOH . F 5 HOH A 243 1443 245 HOH HOH . F 5 HOH A 244 1444 127 HOH HOH . F 5 HOH A 245 1445 294 HOH HOH . F 5 HOH A 246 1446 121 HOH HOH . F 5 HOH A 247 1447 93 HOH HOH . F 5 HOH A 248 1448 316 HOH HOH . F 5 HOH A 249 1449 324 HOH HOH . F 5 HOH A 250 1450 290 HOH HOH . F 5 HOH A 251 1451 113 HOH HOH . F 5 HOH A 252 1452 282 HOH HOH . F 5 HOH A 253 1453 334 HOH HOH . F 5 HOH A 254 1454 266 HOH HOH . F 5 HOH A 255 1455 297 HOH HOH . F 5 HOH A 256 1456 248 HOH HOH . F 5 HOH A 257 1457 201 HOH HOH . F 5 HOH A 258 1458 318 HOH HOH . F 5 HOH A 259 1459 174 HOH HOH . F 5 HOH A 260 1460 123 HOH HOH . F 5 HOH A 261 1461 233 HOH HOH . F 5 HOH A 262 1462 182 HOH HOH . F 5 HOH A 263 1463 124 HOH HOH . F 5 HOH A 264 1464 169 HOH HOH . F 5 HOH A 265 1465 302 HOH HOH . F 5 HOH A 266 1466 116 HOH HOH . F 5 HOH A 267 1467 118 HOH HOH . F 5 HOH A 268 1468 168 HOH HOH . F 5 HOH A 269 1469 207 HOH HOH . F 5 HOH A 270 1470 306 HOH HOH . F 5 HOH A 271 1471 314 HOH HOH . F 5 HOH A 272 1472 125 HOH HOH . F 5 HOH A 273 1473 226 HOH HOH . F 5 HOH A 274 1474 197 HOH HOH . F 5 HOH A 275 1475 115 HOH HOH . F 5 HOH A 276 1476 238 HOH HOH . F 5 HOH A 277 1477 270 HOH HOH . F 5 HOH A 278 1478 117 HOH HOH . F 5 HOH A 279 1479 218 HOH HOH . F 5 HOH A 280 1480 221 HOH HOH . F 5 HOH A 281 1481 331 HOH HOH . F 5 HOH A 282 1482 129 HOH HOH . F 5 HOH A 283 1483 326 HOH HOH . F 5 HOH A 284 1484 203 HOH HOH . F 5 HOH A 285 1485 292 HOH HOH . F 5 HOH A 286 1486 214 HOH HOH . F 5 HOH A 287 1487 192 HOH HOH . F 5 HOH A 288 1488 184 HOH HOH . F 5 HOH A 289 1489 122 HOH HOH . F 5 HOH A 290 1490 330 HOH HOH . F 5 HOH A 291 1491 138 HOH HOH . F 5 HOH A 292 1492 135 HOH HOH . F 5 HOH A 293 1493 183 HOH HOH . F 5 HOH A 294 1494 278 HOH HOH . F 5 HOH A 295 1495 321 HOH HOH . F 5 HOH A 296 1496 142 HOH HOH . F 5 HOH A 297 1497 134 HOH HOH . F 5 HOH A 298 1498 257 HOH HOH . F 5 HOH A 299 1499 139 HOH HOH . F 5 HOH A 300 1500 209 HOH HOH . F 5 HOH A 301 1501 140 HOH HOH . F 5 HOH A 302 1502 256 HOH HOH . F 5 HOH A 303 1503 128 HOH HOH . F 5 HOH A 304 1504 164 HOH HOH . F 5 HOH A 305 1505 237 HOH HOH . F 5 HOH A 306 1506 126 HOH HOH . F 5 HOH A 307 1507 210 HOH HOH . F 5 HOH A 308 1508 136 HOH HOH . F 5 HOH A 309 1509 313 HOH HOH . F 5 HOH A 310 1510 311 HOH HOH . F 5 HOH A 311 1511 112 HOH HOH . F 5 HOH A 312 1512 175 HOH HOH . F 5 HOH A 313 1513 141 HOH HOH . F 5 HOH A 314 1514 204 HOH HOH . F 5 HOH A 315 1515 279 HOH HOH . F 5 HOH A 316 1516 130 HOH HOH . G 5 HOH C 1 101 315 HOH HOH . G 5 HOH C 2 102 320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 7.416 39.434 -37.413 1 79.66 ? P PO4 1102 A 1 HETATM 2 O O1 PO4 . . . D 4 8.601 40.279 -37.992 1 52.3 ? O1 PO4 1102 A 1 HETATM 3 O O2 PO4 . . . D 4 6.111 39.925 -37.923 1 59.2 ? O2 PO4 1102 A 1 HETATM 4 O O3 PO4 . . . D 4 7.406 37.966 -37.745 1 56.56 ? O3 PO4 1102 A 1 HETATM 5 O O4 PO4 . . . D 4 7.303 39.416 -35.897 1 63.63 ? O4 PO4 1102 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #