data_6IBX # _model_server_result.job_id m0pvCwm_t2EWKIIIxkWAWA _model_server_result.datetime_utc '2025-03-04 07:50:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ibx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6IBX # _exptl.entry_id 6IBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IBX _cell.length_a 102.782 _cell.length_b 102.782 _cell.length_c 254.44 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 386 n n P1 O2 POP sing 387 n n P1 O3 POP sing 388 n n P1 O POP sing 389 n n O2 HO2 POP sing 390 n n O P2 POP sing 391 n n P2 O4 POP doub 392 n n P2 O5 POP sing 393 n n P2 O6 POP sing 394 n n O5 HO5 POP sing 395 n n # _atom_sites.entry_id 6IBX _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0.005617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H9Z A 1 501 447 H9Z DRG . C 3 POP A 1 502 448 POP POP . D 4 FLC A 1 503 449 FLC FLC . E 5 F6P A 1 504 450 F6P F6P . F 6 DMS A 1 505 451 DMS DMS . G 7 HOH A 1 601 671 HOH HOH . G 7 HOH A 2 602 615 HOH HOH . G 7 HOH A 3 603 532 HOH HOH . G 7 HOH A 4 604 529 HOH HOH . G 7 HOH A 5 605 619 HOH HOH . G 7 HOH A 6 606 618 HOH HOH . G 7 HOH A 7 607 658 HOH HOH . G 7 HOH A 8 608 675 HOH HOH . G 7 HOH A 9 609 514 HOH HOH . G 7 HOH A 10 610 645 HOH HOH . G 7 HOH A 11 611 498 HOH HOH . G 7 HOH A 12 612 461 HOH HOH . G 7 HOH A 13 613 521 HOH HOH . G 7 HOH A 14 614 477 HOH HOH . G 7 HOH A 15 615 460 HOH HOH . G 7 HOH A 16 616 526 HOH HOH . G 7 HOH A 17 617 659 HOH HOH . G 7 HOH A 18 618 655 HOH HOH . G 7 HOH A 19 619 506 HOH HOH . G 7 HOH A 20 620 500 HOH HOH . G 7 HOH A 21 621 676 HOH HOH . G 7 HOH A 22 622 646 HOH HOH . G 7 HOH A 23 623 623 HOH HOH . G 7 HOH A 24 624 545 HOH HOH . G 7 HOH A 25 625 525 HOH HOH . G 7 HOH A 26 626 601 HOH HOH . G 7 HOH A 27 627 497 HOH HOH . G 7 HOH A 28 628 505 HOH HOH . G 7 HOH A 29 629 531 HOH HOH . G 7 HOH A 30 630 612 HOH HOH . G 7 HOH A 31 631 455 HOH HOH . G 7 HOH A 32 632 632 HOH HOH . G 7 HOH A 33 633 644 HOH HOH . G 7 HOH A 34 634 479 HOH HOH . G 7 HOH A 35 635 642 HOH HOH . G 7 HOH A 36 636 527 HOH HOH . G 7 HOH A 37 637 639 HOH HOH . G 7 HOH A 38 638 464 HOH HOH . G 7 HOH A 39 639 568 HOH HOH . G 7 HOH A 40 640 607 HOH HOH . G 7 HOH A 41 641 471 HOH HOH . G 7 HOH A 42 642 605 HOH HOH . G 7 HOH A 43 643 563 HOH HOH . G 7 HOH A 44 644 611 HOH HOH . G 7 HOH A 45 645 516 HOH HOH . G 7 HOH A 46 646 585 HOH HOH . G 7 HOH A 47 647 513 HOH HOH . G 7 HOH A 48 648 518 HOH HOH . G 7 HOH A 49 649 459 HOH HOH . G 7 HOH A 50 650 507 HOH HOH . G 7 HOH A 51 651 616 HOH HOH . G 7 HOH A 52 652 535 HOH HOH . G 7 HOH A 53 653 677 HOH HOH . G 7 HOH A 54 654 469 HOH HOH . G 7 HOH A 55 655 456 HOH HOH . G 7 HOH A 56 656 496 HOH HOH . G 7 HOH A 57 657 656 HOH HOH . G 7 HOH A 58 658 522 HOH HOH . G 7 HOH A 59 659 472 HOH HOH . G 7 HOH A 60 660 631 HOH HOH . G 7 HOH A 61 661 684 HOH HOH . G 7 HOH A 62 662 550 HOH HOH . G 7 HOH A 63 663 493 HOH HOH . G 7 HOH A 64 664 673 HOH HOH . G 7 HOH A 65 665 468 HOH HOH . G 7 HOH A 66 666 624 HOH HOH . G 7 HOH A 67 667 484 HOH HOH . G 7 HOH A 68 668 478 HOH HOH . G 7 HOH A 69 669 483 HOH HOH . G 7 HOH A 70 670 476 HOH HOH . G 7 HOH A 71 671 628 HOH HOH . G 7 HOH A 72 672 470 HOH HOH . G 7 HOH A 73 673 481 HOH HOH . G 7 HOH A 74 674 679 HOH HOH . G 7 HOH A 75 675 583 HOH HOH . G 7 HOH A 76 676 501 HOH HOH . G 7 HOH A 77 677 560 HOH HOH . G 7 HOH A 78 678 533 HOH HOH . G 7 HOH A 79 679 541 HOH HOH . G 7 HOH A 80 680 627 HOH HOH . G 7 HOH A 81 681 488 HOH HOH . G 7 HOH A 82 682 495 HOH HOH . G 7 HOH A 83 683 553 HOH HOH . G 7 HOH A 84 684 463 HOH HOH . G 7 HOH A 85 685 556 HOH HOH . G 7 HOH A 86 686 538 HOH HOH . G 7 HOH A 87 687 582 HOH HOH . G 7 HOH A 88 688 528 HOH HOH . G 7 HOH A 89 689 534 HOH HOH . G 7 HOH A 90 690 458 HOH HOH . G 7 HOH A 91 691 608 HOH HOH . G 7 HOH A 92 692 569 HOH HOH . G 7 HOH A 93 693 653 HOH HOH . G 7 HOH A 94 694 626 HOH HOH . G 7 HOH A 95 695 595 HOH HOH . G 7 HOH A 96 696 597 HOH HOH . G 7 HOH A 97 697 547 HOH HOH . G 7 HOH A 98 698 638 HOH HOH . G 7 HOH A 99 699 581 HOH HOH . G 7 HOH A 100 700 683 HOH HOH . G 7 HOH A 101 701 453 HOH HOH . G 7 HOH A 102 702 539 HOH HOH . G 7 HOH A 103 703 661 HOH HOH . G 7 HOH A 104 704 546 HOH HOH . G 7 HOH A 105 705 485 HOH HOH . G 7 HOH A 106 706 548 HOH HOH . G 7 HOH A 107 707 557 HOH HOH . G 7 HOH A 108 708 572 HOH HOH . G 7 HOH A 109 709 559 HOH HOH . G 7 HOH A 110 710 462 HOH HOH . G 7 HOH A 111 711 613 HOH HOH . G 7 HOH A 112 712 517 HOH HOH . G 7 HOH A 113 713 454 HOH HOH . G 7 HOH A 114 714 576 HOH HOH . G 7 HOH A 115 715 482 HOH HOH . G 7 HOH A 116 716 652 HOH HOH . G 7 HOH A 117 717 519 HOH HOH . G 7 HOH A 118 718 567 HOH HOH . G 7 HOH A 119 719 674 HOH HOH . G 7 HOH A 120 720 594 HOH HOH . G 7 HOH A 121 721 512 HOH HOH . G 7 HOH A 122 722 502 HOH HOH . G 7 HOH A 123 723 633 HOH HOH . G 7 HOH A 124 724 536 HOH HOH . G 7 HOH A 125 725 682 HOH HOH . G 7 HOH A 126 726 554 HOH HOH . G 7 HOH A 127 727 610 HOH HOH . G 7 HOH A 128 728 503 HOH HOH . G 7 HOH A 129 729 603 HOH HOH . G 7 HOH A 130 730 599 HOH HOH . G 7 HOH A 131 731 593 HOH HOH . G 7 HOH A 132 732 487 HOH HOH . G 7 HOH A 133 733 524 HOH HOH . G 7 HOH A 134 734 562 HOH HOH . G 7 HOH A 135 735 614 HOH HOH . G 7 HOH A 136 736 641 HOH HOH . G 7 HOH A 137 737 537 HOH HOH . G 7 HOH A 138 738 606 HOH HOH . G 7 HOH A 139 739 681 HOH HOH . G 7 HOH A 140 740 480 HOH HOH . G 7 HOH A 141 741 473 HOH HOH . G 7 HOH A 142 742 590 HOH HOH . G 7 HOH A 143 743 508 HOH HOH . G 7 HOH A 144 744 574 HOH HOH . G 7 HOH A 145 745 492 HOH HOH . G 7 HOH A 146 746 511 HOH HOH . G 7 HOH A 147 747 580 HOH HOH . G 7 HOH A 148 748 543 HOH HOH . G 7 HOH A 149 749 467 HOH HOH . G 7 HOH A 150 750 685 HOH HOH . G 7 HOH A 151 751 602 HOH HOH . G 7 HOH A 152 752 598 HOH HOH . G 7 HOH A 153 753 457 HOH HOH . G 7 HOH A 154 754 577 HOH HOH . G 7 HOH A 155 755 665 HOH HOH . G 7 HOH A 156 756 452 HOH HOH . G 7 HOH A 157 757 474 HOH HOH . G 7 HOH A 158 758 570 HOH HOH . G 7 HOH A 159 759 489 HOH HOH . G 7 HOH A 160 760 475 HOH HOH . G 7 HOH A 161 761 520 HOH HOH . G 7 HOH A 162 762 604 HOH HOH . G 7 HOH A 163 763 466 HOH HOH . G 7 HOH A 164 764 635 HOH HOH . G 7 HOH A 165 765 540 HOH HOH . G 7 HOH A 166 766 510 HOH HOH . G 7 HOH A 167 767 680 HOH HOH . G 7 HOH A 168 768 566 HOH HOH . G 7 HOH A 169 769 660 HOH HOH . G 7 HOH A 170 770 549 HOH HOH . G 7 HOH A 171 771 589 HOH HOH . G 7 HOH A 172 772 490 HOH HOH . G 7 HOH A 173 773 657 HOH HOH . G 7 HOH A 174 774 596 HOH HOH . G 7 HOH A 175 775 668 HOH HOH . G 7 HOH A 176 776 544 HOH HOH . G 7 HOH A 177 777 504 HOH HOH . G 7 HOH A 178 778 515 HOH HOH . G 7 HOH A 179 779 592 HOH HOH . G 7 HOH A 180 780 600 HOH HOH . G 7 HOH A 181 781 669 HOH HOH . G 7 HOH A 182 782 666 HOH HOH . G 7 HOH A 183 783 636 HOH HOH . G 7 HOH A 184 784 465 HOH HOH . G 7 HOH A 185 785 509 HOH HOH . G 7 HOH A 186 786 650 HOH HOH . G 7 HOH A 187 787 491 HOH HOH . G 7 HOH A 188 788 575 HOH HOH . G 7 HOH A 189 789 530 HOH HOH . G 7 HOH A 190 790 571 HOH HOH . G 7 HOH A 191 791 654 HOH HOH . G 7 HOH A 192 792 564 HOH HOH . G 7 HOH A 193 793 573 HOH HOH . G 7 HOH A 194 794 647 HOH HOH . G 7 HOH A 195 795 499 HOH HOH . G 7 HOH A 196 796 584 HOH HOH . G 7 HOH A 197 797 649 HOH HOH . G 7 HOH A 198 798 640 HOH HOH . G 7 HOH A 199 799 663 HOH HOH . G 7 HOH A 200 800 670 HOH HOH . G 7 HOH A 201 801 651 HOH HOH . G 7 HOH A 202 802 494 HOH HOH . G 7 HOH A 203 803 625 HOH HOH . G 7 HOH A 204 804 558 HOH HOH . G 7 HOH A 205 805 555 HOH HOH . G 7 HOH A 206 806 586 HOH HOH . G 7 HOH A 207 807 578 HOH HOH . G 7 HOH A 208 808 621 HOH HOH . G 7 HOH A 209 809 587 HOH HOH . G 7 HOH A 210 810 542 HOH HOH . G 7 HOH A 211 811 617 HOH HOH . G 7 HOH A 212 812 591 HOH HOH . G 7 HOH A 213 813 643 HOH HOH . G 7 HOH A 214 814 561 HOH HOH . G 7 HOH A 215 815 486 HOH HOH . G 7 HOH A 216 816 620 HOH HOH . G 7 HOH A 217 817 579 HOH HOH . G 7 HOH A 218 818 622 HOH HOH . G 7 HOH A 219 819 551 HOH HOH . G 7 HOH A 220 820 667 HOH HOH . G 7 HOH A 221 821 588 HOH HOH . G 7 HOH A 222 822 565 HOH HOH . G 7 HOH A 223 823 523 HOH HOH . G 7 HOH A 224 824 662 HOH HOH . G 7 HOH A 225 825 678 HOH HOH . G 7 HOH A 226 826 629 HOH HOH . G 7 HOH A 227 827 686 HOH HOH . G 7 HOH A 228 828 634 HOH HOH . G 7 HOH A 229 829 552 HOH HOH . G 7 HOH A 230 830 664 HOH HOH . G 7 HOH A 231 831 672 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . C 3 92.286 47.547 259.889 1 36.17 ? P1 POP 502 A 1 HETATM 2 O O1 POP . . . C 3 91.79 47.51 258.463 1 32.3 ? O1 POP 502 A 1 HETATM 3 O O2 POP . . . C 3 92.052 46.32 260.752 1 34.5 ? O2 POP 502 A 1 HETATM 4 O O3 POP . . . C 3 91.84 48.841 260.52 1 27.19 ? O3 POP 502 A 1 HETATM 5 O O POP . . . C 3 93.915 47.485 259.864 1 26.98 ? O POP 502 A 1 HETATM 6 P P2 POP . . . C 3 94.923 48.278 258.922 1 28.66 ? P2 POP 502 A 1 HETATM 7 O O4 POP . . . C 3 95.449 47.232 257.953 1 28.82 ? O4 POP 502 A 1 HETATM 8 O O5 POP . . . C 3 96.046 48.597 259.877 1 24.55 ? O5 POP 502 A 1 HETATM 9 O O6 POP . . . C 3 94.328 49.501 258.23 1 26.4 ? O6 POP 502 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 656 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 9 #