data_6IBY # _model_server_result.job_id WInx7olL14Tv2Paj-Cxj3g _model_server_result.datetime_utc '2025-03-04 07:48:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6IBY # _exptl.entry_id 6IBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IBY _cell.length_a 102.532 _cell.length_b 102.532 _cell.length_c 253.658 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 421 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 439 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 505 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.98 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 6IBY _atom_sites.fract_transf_matrix[1][1] 0.009753 _atom_sites.fract_transf_matrix[1][2] 0.005631 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HAT A 1 501 447 HAT DRG . C 3 POP A 1 502 448 POP POP . D 4 FLC A 1 503 449 FLC FLC . E 5 F6P A 1 504 450 F6P F6P . F 6 BME A 1 505 451 BME BME . G 7 PO4 A 1 506 452 PO4 PO4 . H 8 HOH A 1 601 675 HOH HOH . H 8 HOH A 2 602 669 HOH HOH . H 8 HOH A 3 603 622 HOH HOH . H 8 HOH A 4 604 646 HOH HOH . H 8 HOH A 5 605 654 HOH HOH . H 8 HOH A 6 606 497 HOH HOH . H 8 HOH A 7 607 620 HOH HOH . H 8 HOH A 8 608 636 HOH HOH . H 8 HOH A 9 609 472 HOH HOH . H 8 HOH A 10 610 624 HOH HOH . H 8 HOH A 11 611 625 HOH HOH . H 8 HOH A 12 612 602 HOH HOH . H 8 HOH A 13 613 681 HOH HOH . H 8 HOH A 14 614 652 HOH HOH . H 8 HOH A 15 615 454 HOH HOH . H 8 HOH A 16 616 471 HOH HOH . H 8 HOH A 17 617 639 HOH HOH . H 8 HOH A 18 618 674 HOH HOH . H 8 HOH A 19 619 650 HOH HOH . H 8 HOH A 20 620 607 HOH HOH . H 8 HOH A 21 621 617 HOH HOH . H 8 HOH A 22 622 731 HOH HOH . H 8 HOH A 23 623 651 HOH HOH . H 8 HOH A 24 624 591 HOH HOH . H 8 HOH A 25 625 473 HOH HOH . H 8 HOH A 26 626 663 HOH HOH . H 8 HOH A 27 627 464 HOH HOH . H 8 HOH A 28 628 653 HOH HOH . H 8 HOH A 29 629 525 HOH HOH . H 8 HOH A 30 630 600 HOH HOH . H 8 HOH A 31 631 614 HOH HOH . H 8 HOH A 32 632 615 HOH HOH . H 8 HOH A 33 633 635 HOH HOH . H 8 HOH A 34 634 558 HOH HOH . H 8 HOH A 35 635 618 HOH HOH . H 8 HOH A 36 636 672 HOH HOH . H 8 HOH A 37 637 603 HOH HOH . H 8 HOH A 38 638 515 HOH HOH . H 8 HOH A 39 639 627 HOH HOH . H 8 HOH A 40 640 671 HOH HOH . H 8 HOH A 41 641 595 HOH HOH . H 8 HOH A 42 642 630 HOH HOH . H 8 HOH A 43 643 641 HOH HOH . H 8 HOH A 44 644 489 HOH HOH . H 8 HOH A 45 645 609 HOH HOH . H 8 HOH A 46 646 632 HOH HOH . H 8 HOH A 47 647 520 HOH HOH . H 8 HOH A 48 648 693 HOH HOH . H 8 HOH A 49 649 626 HOH HOH . H 8 HOH A 50 650 683 HOH HOH . H 8 HOH A 51 651 478 HOH HOH . H 8 HOH A 52 652 465 HOH HOH . H 8 HOH A 53 653 592 HOH HOH . H 8 HOH A 54 654 629 HOH HOH . H 8 HOH A 55 655 468 HOH HOH . H 8 HOH A 56 656 649 HOH HOH . H 8 HOH A 57 657 712 HOH HOH . H 8 HOH A 58 658 688 HOH HOH . H 8 HOH A 59 659 456 HOH HOH . H 8 HOH A 60 660 637 HOH HOH . H 8 HOH A 61 661 667 HOH HOH . H 8 HOH A 62 662 469 HOH HOH . H 8 HOH A 63 663 804 HOH HOH . H 8 HOH A 64 664 552 HOH HOH . H 8 HOH A 65 665 483 HOH HOH . H 8 HOH A 66 666 734 HOH HOH . H 8 HOH A 67 667 601 HOH HOH . H 8 HOH A 68 668 661 HOH HOH . H 8 HOH A 69 669 604 HOH HOH . H 8 HOH A 70 670 613 HOH HOH . H 8 HOH A 71 671 480 HOH HOH . H 8 HOH A 72 672 524 HOH HOH . H 8 HOH A 73 673 505 HOH HOH . H 8 HOH A 74 674 770 HOH HOH . H 8 HOH A 75 675 453 HOH HOH . H 8 HOH A 76 676 631 HOH HOH . H 8 HOH A 77 677 707 HOH HOH . H 8 HOH A 78 678 619 HOH HOH . H 8 HOH A 79 679 783 HOH HOH . H 8 HOH A 80 680 644 HOH HOH . H 8 HOH A 81 681 495 HOH HOH . H 8 HOH A 82 682 687 HOH HOH . H 8 HOH A 83 683 657 HOH HOH . H 8 HOH A 84 684 517 HOH HOH . H 8 HOH A 85 685 700 HOH HOH . H 8 HOH A 86 686 769 HOH HOH . H 8 HOH A 87 687 751 HOH HOH . H 8 HOH A 88 688 668 HOH HOH . H 8 HOH A 89 689 611 HOH HOH . H 8 HOH A 90 690 716 HOH HOH . H 8 HOH A 91 691 680 HOH HOH . H 8 HOH A 92 692 633 HOH HOH . H 8 HOH A 93 693 642 HOH HOH . H 8 HOH A 94 694 598 HOH HOH . H 8 HOH A 95 695 628 HOH HOH . H 8 HOH A 96 696 457 HOH HOH . H 8 HOH A 97 697 460 HOH HOH . H 8 HOH A 98 698 596 HOH HOH . H 8 HOH A 99 699 698 HOH HOH . H 8 HOH A 100 700 676 HOH HOH . H 8 HOH A 101 701 587 HOH HOH . H 8 HOH A 102 702 590 HOH HOH . H 8 HOH A 103 703 509 HOH HOH . H 8 HOH A 104 704 645 HOH HOH . H 8 HOH A 105 705 682 HOH HOH . H 8 HOH A 106 706 461 HOH HOH . H 8 HOH A 107 707 634 HOH HOH . H 8 HOH A 108 708 612 HOH HOH . H 8 HOH A 109 709 493 HOH HOH . H 8 HOH A 110 710 701 HOH HOH . H 8 HOH A 111 711 656 HOH HOH . H 8 HOH A 112 712 593 HOH HOH . H 8 HOH A 113 713 610 HOH HOH . H 8 HOH A 114 714 606 HOH HOH . H 8 HOH A 115 715 623 HOH HOH . H 8 HOH A 116 716 605 HOH HOH . H 8 HOH A 117 717 679 HOH HOH . H 8 HOH A 118 718 621 HOH HOH . H 8 HOH A 119 719 741 HOH HOH . H 8 HOH A 120 720 685 HOH HOH . H 8 HOH A 121 721 665 HOH HOH . H 8 HOH A 122 722 655 HOH HOH . H 8 HOH A 123 723 616 HOH HOH . H 8 HOH A 124 724 686 HOH HOH . H 8 HOH A 125 725 662 HOH HOH . H 8 HOH A 126 726 666 HOH HOH . H 8 HOH A 127 727 684 HOH HOH . H 8 HOH A 128 728 664 HOH HOH . H 8 HOH A 129 729 597 HOH HOH . H 8 HOH A 130 730 608 HOH HOH . H 8 HOH A 131 731 659 HOH HOH . H 8 HOH A 132 732 648 HOH HOH . H 8 HOH A 133 733 670 HOH HOH . H 8 HOH A 134 734 658 HOH HOH . H 8 HOH A 135 735 678 HOH HOH . H 8 HOH A 136 736 638 HOH HOH . H 8 HOH A 137 737 647 HOH HOH . H 8 HOH A 138 738 660 HOH HOH . H 8 HOH A 139 739 599 HOH HOH . H 8 HOH A 140 740 643 HOH HOH . H 8 HOH A 141 741 640 HOH HOH . H 8 HOH A 142 742 588 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 6 106.718 -30.085 258.707 1 44.58 ? C1 BME 505 A 1 HETATM 2 C C2 BME . . . F 6 107.055 -30.456 260.157 1 47.96 ? C2 BME 505 A 1 HETATM 3 O O1 BME . . . F 6 107.894 -29.547 258.099 1 47.11 ? O1 BME 505 A 1 HETATM 4 S S2 BME . . . F 6 106.795 -29.002 261.244 1 42.31 ? S2 BME 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #