data_6IBZ # _model_server_result.job_id v9QbrgDhnlHI-ruJ8zQTWQ _model_server_result.datetime_utc '2025-03-04 07:40:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ibz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6IBZ # _exptl.entry_id 6IBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IBZ _cell.length_a 103.046 _cell.length_b 103.046 _cell.length_c 253.938 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6IBZ _atom_sites.fract_transf_matrix[1][1] 0.009704 _atom_sites.fract_transf_matrix[1][2] 0.005603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 447 PO4 PO4 . C 3 FLC A 1 502 448 FLC FLC . D 4 HAW A 1 503 449 HAW DRG . E 5 F6P A 1 504 450 F6P F6P . F 6 HOH A 1 601 654 HOH HOH . F 6 HOH A 2 602 640 HOH HOH . F 6 HOH A 3 603 680 HOH HOH . F 6 HOH A 4 604 647 HOH HOH . F 6 HOH A 5 605 625 HOH HOH . F 6 HOH A 6 606 676 HOH HOH . F 6 HOH A 7 607 646 HOH HOH . F 6 HOH A 8 608 463 HOH HOH . F 6 HOH A 9 609 470 HOH HOH . F 6 HOH A 10 610 650 HOH HOH . F 6 HOH A 11 611 510 HOH HOH . F 6 HOH A 12 612 648 HOH HOH . F 6 HOH A 13 613 661 HOH HOH . F 6 HOH A 14 614 671 HOH HOH . F 6 HOH A 15 615 641 HOH HOH . F 6 HOH A 16 616 626 HOH HOH . F 6 HOH A 17 617 473 HOH HOH . F 6 HOH A 18 618 454 HOH HOH . F 6 HOH A 19 619 667 HOH HOH . F 6 HOH A 20 620 531 HOH HOH . F 6 HOH A 21 621 475 HOH HOH . F 6 HOH A 22 622 675 HOH HOH . F 6 HOH A 23 623 644 HOH HOH . F 6 HOH A 24 624 635 HOH HOH . F 6 HOH A 25 625 451 HOH HOH . F 6 HOH A 26 626 455 HOH HOH . F 6 HOH A 27 627 502 HOH HOH . F 6 HOH A 28 628 632 HOH HOH . F 6 HOH A 29 629 678 HOH HOH . F 6 HOH A 30 630 509 HOH HOH . F 6 HOH A 31 631 495 HOH HOH . F 6 HOH A 32 632 462 HOH HOH . F 6 HOH A 33 633 645 HOH HOH . F 6 HOH A 34 634 664 HOH HOH . F 6 HOH A 35 635 479 HOH HOH . F 6 HOH A 36 636 458 HOH HOH . F 6 HOH A 37 637 499 HOH HOH . F 6 HOH A 38 638 476 HOH HOH . F 6 HOH A 39 639 469 HOH HOH . F 6 HOH A 40 640 468 HOH HOH . F 6 HOH A 41 641 503 HOH HOH . F 6 HOH A 42 642 672 HOH HOH . F 6 HOH A 43 643 639 HOH HOH . F 6 HOH A 44 644 666 HOH HOH . F 6 HOH A 45 645 633 HOH HOH . F 6 HOH A 46 646 630 HOH HOH . F 6 HOH A 47 647 686 HOH HOH . F 6 HOH A 48 648 638 HOH HOH . F 6 HOH A 49 649 486 HOH HOH . F 6 HOH A 50 650 656 HOH HOH . F 6 HOH A 51 651 500 HOH HOH . F 6 HOH A 52 652 649 HOH HOH . F 6 HOH A 53 653 477 HOH HOH . F 6 HOH A 54 654 660 HOH HOH . F 6 HOH A 55 655 658 HOH HOH . F 6 HOH A 56 656 651 HOH HOH . F 6 HOH A 57 657 487 HOH HOH . F 6 HOH A 58 658 659 HOH HOH . F 6 HOH A 59 659 674 HOH HOH . F 6 HOH A 60 660 525 HOH HOH . F 6 HOH A 61 661 497 HOH HOH . F 6 HOH A 62 662 474 HOH HOH . F 6 HOH A 63 663 493 HOH HOH . F 6 HOH A 64 664 452 HOH HOH . F 6 HOH A 65 665 471 HOH HOH . F 6 HOH A 66 666 668 HOH HOH . F 6 HOH A 67 667 634 HOH HOH . F 6 HOH A 68 668 655 HOH HOH . F 6 HOH A 69 669 498 HOH HOH . F 6 HOH A 70 670 636 HOH HOH . F 6 HOH A 71 671 453 HOH HOH . F 6 HOH A 72 672 490 HOH HOH . F 6 HOH A 73 673 536 HOH HOH . F 6 HOH A 74 674 528 HOH HOH . F 6 HOH A 75 675 529 HOH HOH . F 6 HOH A 76 676 662 HOH HOH . F 6 HOH A 77 677 520 HOH HOH . F 6 HOH A 78 678 552 HOH HOH . F 6 HOH A 79 679 590 HOH HOH . F 6 HOH A 80 680 508 HOH HOH . F 6 HOH A 81 681 570 HOH HOH . F 6 HOH A 82 682 682 HOH HOH . F 6 HOH A 83 683 628 HOH HOH . F 6 HOH A 84 684 677 HOH HOH . F 6 HOH A 85 685 489 HOH HOH . F 6 HOH A 86 686 464 HOH HOH . F 6 HOH A 87 687 481 HOH HOH . F 6 HOH A 88 688 547 HOH HOH . F 6 HOH A 89 689 624 HOH HOH . F 6 HOH A 90 690 673 HOH HOH . F 6 HOH A 91 691 685 HOH HOH . F 6 HOH A 92 692 516 HOH HOH . F 6 HOH A 93 693 627 HOH HOH . F 6 HOH A 94 694 629 HOH HOH . F 6 HOH A 95 695 480 HOH HOH . F 6 HOH A 96 696 669 HOH HOH . F 6 HOH A 97 697 545 HOH HOH . F 6 HOH A 98 698 657 HOH HOH . F 6 HOH A 99 699 488 HOH HOH . F 6 HOH A 100 700 683 HOH HOH . F 6 HOH A 101 701 567 HOH HOH . F 6 HOH A 102 702 456 HOH HOH . F 6 HOH A 103 703 670 HOH HOH . F 6 HOH A 104 704 482 HOH HOH . F 6 HOH A 105 705 491 HOH HOH . F 6 HOH A 106 706 501 HOH HOH . F 6 HOH A 107 707 653 HOH HOH . F 6 HOH A 108 708 663 HOH HOH . F 6 HOH A 109 709 643 HOH HOH . F 6 HOH A 110 710 681 HOH HOH . F 6 HOH A 111 711 496 HOH HOH . F 6 HOH A 112 712 684 HOH HOH . F 6 HOH A 113 713 579 HOH HOH . F 6 HOH A 114 714 687 HOH HOH . F 6 HOH A 115 715 623 HOH HOH . F 6 HOH A 116 716 515 HOH HOH . F 6 HOH A 117 717 688 HOH HOH . F 6 HOH A 118 718 608 HOH HOH . F 6 HOH A 119 719 642 HOH HOH . F 6 HOH A 120 720 665 HOH HOH . F 6 HOH A 121 721 679 HOH HOH . F 6 HOH A 122 722 631 HOH HOH . F 6 HOH A 123 723 637 HOH HOH . F 6 HOH A 124 724 621 HOH HOH . F 6 HOH A 125 725 652 HOH HOH . F 6 HOH A 126 726 616 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . E 5 58.037 68.319 267.476 1 34.29 ? O1 F6P 504 A 1 HETATM 2 C C1 F6P . . . E 5 58.938 67.726 268.429 1 32.11 ? C1 F6P 504 A 1 HETATM 3 C C2 F6P . . . E 5 60.324 68.384 268.388 1 30.2 ? C2 F6P 504 A 1 HETATM 4 O O2 F6P . . . E 5 61.151 67.584 269.27 1 26.55 ? O2 F6P 504 A 1 HETATM 5 C C3 F6P . . . E 5 60.269 69.872 268.75 1 29.18 ? C3 F6P 504 A 1 HETATM 6 O O3 F6P . . . E 5 60.305 70.17 270.135 1 30.44 ? O3 F6P 504 A 1 HETATM 7 C C4 F6P . . . E 5 61.433 70.484 268.011 1 28.41 ? C4 F6P 504 A 1 HETATM 8 O O4 F6P . . . E 5 61.228 71.889 267.811 1 28.3 ? O4 F6P 504 A 1 HETATM 9 C C5 F6P . . . E 5 61.327 69.73 266.706 1 27.4 ? C5 F6P 504 A 1 HETATM 10 O O5 F6P . . . E 5 60.87 68.425 267.053 1 28.1 ? O5 F6P 504 A 1 HETATM 11 C C6 F6P . . . E 5 62.59 69.659 265.877 1 29.05 ? C6 F6P 504 A 1 HETATM 12 O O6 F6P . . . E 5 62.286 69.122 264.597 1 28.53 ? O6 F6P 504 A 1 HETATM 13 P P F6P . . . E 5 62.535 70.013 263.3 1 33.14 ? P F6P 504 A 1 HETATM 14 O O1P F6P . . . E 5 62.099 69.075 262.191 1 34.98 ? O1P F6P 504 A 1 HETATM 15 O O2P F6P . . . E 5 64.025 70.293 263.273 1 29.58 ? O2P F6P 504 A 1 HETATM 16 O O3P F6P . . . E 5 61.604 71.188 263.492 1 31.26 ? O3P F6P 504 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #