data_6IC0 # _model_server_result.job_id biVFmuGyvFMfO_VBR6BT9Q _model_server_result.datetime_utc '2024-11-23 10:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ic0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6IC0 # _exptl.entry_id 6IC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IC0 _cell.length_a 101.942 _cell.length_b 101.942 _cell.length_c 251.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 376 n n P1 O2 POP sing 377 n n P1 O3 POP sing 378 n n P1 O POP sing 379 n n O2 HO2 POP sing 380 n n O P2 POP sing 381 n n P2 O4 POP doub 382 n n P2 O5 POP sing 383 n n P2 O6 POP sing 384 n n O5 HO5 POP sing 385 n n # _atom_sites.entry_id 6IC0 _atom_sites.fract_transf_matrix[1][1] 0.009809 _atom_sites.fract_transf_matrix[1][2] 0.005664 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HAK A 1 501 446 HAK DRG . C 3 POP A 1 502 447 POP POP . D 4 FLC A 1 503 448 FLC FLC . E 5 F6P A 1 504 449 F6P F6P . F 6 DMS A 1 505 450 DMS DMS . G 7 HOH A 1 601 460 HOH HOH . G 7 HOH A 2 602 494 HOH HOH . G 7 HOH A 3 603 452 HOH HOH . G 7 HOH A 4 604 501 HOH HOH . G 7 HOH A 5 605 469 HOH HOH . G 7 HOH A 6 606 474 HOH HOH . G 7 HOH A 7 607 486 HOH HOH . G 7 HOH A 8 608 473 HOH HOH . G 7 HOH A 9 609 515 HOH HOH . G 7 HOH A 10 610 489 HOH HOH . G 7 HOH A 11 611 480 HOH HOH . G 7 HOH A 12 612 529 HOH HOH . G 7 HOH A 13 613 510 HOH HOH . G 7 HOH A 14 614 483 HOH HOH . G 7 HOH A 15 615 493 HOH HOH . G 7 HOH A 16 616 465 HOH HOH . G 7 HOH A 17 617 459 HOH HOH . G 7 HOH A 18 618 463 HOH HOH . G 7 HOH A 19 619 456 HOH HOH . G 7 HOH A 20 620 470 HOH HOH . G 7 HOH A 21 621 481 HOH HOH . G 7 HOH A 22 622 523 HOH HOH . G 7 HOH A 23 623 466 HOH HOH . G 7 HOH A 24 624 458 HOH HOH . G 7 HOH A 25 625 471 HOH HOH . G 7 HOH A 26 626 451 HOH HOH . G 7 HOH A 27 627 476 HOH HOH . G 7 HOH A 28 628 517 HOH HOH . G 7 HOH A 29 629 477 HOH HOH . G 7 HOH A 30 630 497 HOH HOH . G 7 HOH A 31 631 520 HOH HOH . G 7 HOH A 32 632 462 HOH HOH . G 7 HOH A 33 633 472 HOH HOH . G 7 HOH A 34 634 514 HOH HOH . G 7 HOH A 35 635 454 HOH HOH . G 7 HOH A 36 636 516 HOH HOH . G 7 HOH A 37 637 467 HOH HOH . G 7 HOH A 38 638 461 HOH HOH . G 7 HOH A 39 639 500 HOH HOH . G 7 HOH A 40 640 482 HOH HOH . G 7 HOH A 41 641 521 HOH HOH . G 7 HOH A 42 642 453 HOH HOH . G 7 HOH A 43 643 502 HOH HOH . G 7 HOH A 44 644 468 HOH HOH . G 7 HOH A 45 645 478 HOH HOH . G 7 HOH A 46 646 527 HOH HOH . G 7 HOH A 47 647 519 HOH HOH . G 7 HOH A 48 648 455 HOH HOH . G 7 HOH A 49 649 485 HOH HOH . G 7 HOH A 50 650 492 HOH HOH . G 7 HOH A 51 651 524 HOH HOH . G 7 HOH A 52 652 495 HOH HOH . G 7 HOH A 53 653 528 HOH HOH . G 7 HOH A 54 654 488 HOH HOH . G 7 HOH A 55 655 490 HOH HOH . G 7 HOH A 56 656 479 HOH HOH . G 7 HOH A 57 657 457 HOH HOH . G 7 HOH A 58 658 511 HOH HOH . G 7 HOH A 59 659 508 HOH HOH . G 7 HOH A 60 660 525 HOH HOH . G 7 HOH A 61 661 484 HOH HOH . G 7 HOH A 62 662 487 HOH HOH . G 7 HOH A 63 663 512 HOH HOH . G 7 HOH A 64 664 464 HOH HOH . G 7 HOH A 65 665 475 HOH HOH . G 7 HOH A 66 666 507 HOH HOH . G 7 HOH A 67 667 491 HOH HOH . G 7 HOH A 68 668 496 HOH HOH . G 7 HOH A 69 669 526 HOH HOH . G 7 HOH A 70 670 503 HOH HOH . G 7 HOH A 71 671 499 HOH HOH . G 7 HOH A 72 672 505 HOH HOH . G 7 HOH A 73 673 506 HOH HOH . G 7 HOH A 74 674 504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . C 3 144.77 -40.442 255.881 1 36.89 ? P1 POP 502 A 1 HETATM 2 O O1 POP . . . C 3 145.194 -41.556 254.966 1 35.78 ? O1 POP 502 A 1 HETATM 3 O O2 POP . . . C 3 144.014 -39.313 255.197 1 34.3 ? O2 POP 502 A 1 HETATM 4 O O3 POP . . . C 3 145.921 -39.989 256.761 1 37.37 ? O3 POP 502 A 1 HETATM 5 O O POP . . . C 3 143.773 -41.154 256.965 1 34.96 ? O POP 502 A 1 HETATM 6 P P2 POP . . . C 3 142.15 -41.109 256.858 1 40.74 ? P2 POP 502 A 1 HETATM 7 O O4 POP . . . C 3 141.91 -41.251 255.345 1 42.41 ? O4 POP 502 A 1 HETATM 8 O O5 POP . . . C 3 141.593 -39.779 257.322 1 38.35 ? O5 POP 502 A 1 HETATM 9 O O6 POP . . . C 3 141.715 -42.232 257.792 1 37.99 ? O6 POP 502 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #