data_6IC0 # _model_server_result.job_id H60IjH5OG3_0kCjlolBKIw _model_server_result.datetime_utc '2024-10-15 11:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ic0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6IC0 # _exptl.entry_id 6IC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IC0 _cell.length_a 101.942 _cell.length_b 101.942 _cell.length_c 251.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 92 n n O1 HO1 F6P sing 93 n n C1 C2 F6P sing 94 n n C1 H11 F6P sing 95 n n C1 H12 F6P sing 96 n n C2 O2 F6P sing 97 n n C2 C3 F6P sing 98 n n C2 O5 F6P sing 99 n n O2 HO2 F6P sing 100 n n C3 O3 F6P sing 101 n n C3 C4 F6P sing 102 n n C3 H3 F6P sing 103 n n O3 HO3 F6P sing 104 n n C4 O4 F6P sing 105 n n C4 C5 F6P sing 106 n n C4 H4 F6P sing 107 n n O4 HO4 F6P sing 108 n n C5 O5 F6P sing 109 n n C5 C6 F6P sing 110 n n C5 H5 F6P sing 111 n n C6 O6 F6P sing 112 n n C6 H61 F6P sing 113 n n C6 H62 F6P sing 114 n n O6 P F6P sing 115 n n P O1P F6P doub 116 n n P O2P F6P sing 117 n n P O3P F6P sing 118 n n O2P HOP2 F6P sing 119 n n O3P HOP3 F6P sing 120 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6IC0 _atom_sites.fract_transf_matrix[1][1] 0.009809 _atom_sites.fract_transf_matrix[1][2] 0.005664 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HAK A 1 501 446 HAK DRG . C 3 POP A 1 502 447 POP POP . D 4 FLC A 1 503 448 FLC FLC . E 5 F6P A 1 504 449 F6P F6P . F 6 DMS A 1 505 450 DMS DMS . G 7 HOH A 1 601 460 HOH HOH . G 7 HOH A 2 602 494 HOH HOH . G 7 HOH A 3 603 452 HOH HOH . G 7 HOH A 4 604 501 HOH HOH . G 7 HOH A 5 605 469 HOH HOH . G 7 HOH A 6 606 474 HOH HOH . G 7 HOH A 7 607 486 HOH HOH . G 7 HOH A 8 608 473 HOH HOH . G 7 HOH A 9 609 515 HOH HOH . G 7 HOH A 10 610 489 HOH HOH . G 7 HOH A 11 611 480 HOH HOH . G 7 HOH A 12 612 529 HOH HOH . G 7 HOH A 13 613 510 HOH HOH . G 7 HOH A 14 614 483 HOH HOH . G 7 HOH A 15 615 493 HOH HOH . G 7 HOH A 16 616 465 HOH HOH . G 7 HOH A 17 617 459 HOH HOH . G 7 HOH A 18 618 463 HOH HOH . G 7 HOH A 19 619 456 HOH HOH . G 7 HOH A 20 620 470 HOH HOH . G 7 HOH A 21 621 481 HOH HOH . G 7 HOH A 22 622 523 HOH HOH . G 7 HOH A 23 623 466 HOH HOH . G 7 HOH A 24 624 458 HOH HOH . G 7 HOH A 25 625 471 HOH HOH . G 7 HOH A 26 626 451 HOH HOH . G 7 HOH A 27 627 476 HOH HOH . G 7 HOH A 28 628 517 HOH HOH . G 7 HOH A 29 629 477 HOH HOH . G 7 HOH A 30 630 497 HOH HOH . G 7 HOH A 31 631 520 HOH HOH . G 7 HOH A 32 632 462 HOH HOH . G 7 HOH A 33 633 472 HOH HOH . G 7 HOH A 34 634 514 HOH HOH . G 7 HOH A 35 635 454 HOH HOH . G 7 HOH A 36 636 516 HOH HOH . G 7 HOH A 37 637 467 HOH HOH . G 7 HOH A 38 638 461 HOH HOH . G 7 HOH A 39 639 500 HOH HOH . G 7 HOH A 40 640 482 HOH HOH . G 7 HOH A 41 641 521 HOH HOH . G 7 HOH A 42 642 453 HOH HOH . G 7 HOH A 43 643 502 HOH HOH . G 7 HOH A 44 644 468 HOH HOH . G 7 HOH A 45 645 478 HOH HOH . G 7 HOH A 46 646 527 HOH HOH . G 7 HOH A 47 647 519 HOH HOH . G 7 HOH A 48 648 455 HOH HOH . G 7 HOH A 49 649 485 HOH HOH . G 7 HOH A 50 650 492 HOH HOH . G 7 HOH A 51 651 524 HOH HOH . G 7 HOH A 52 652 495 HOH HOH . G 7 HOH A 53 653 528 HOH HOH . G 7 HOH A 54 654 488 HOH HOH . G 7 HOH A 55 655 490 HOH HOH . G 7 HOH A 56 656 479 HOH HOH . G 7 HOH A 57 657 457 HOH HOH . G 7 HOH A 58 658 511 HOH HOH . G 7 HOH A 59 659 508 HOH HOH . G 7 HOH A 60 660 525 HOH HOH . G 7 HOH A 61 661 484 HOH HOH . G 7 HOH A 62 662 487 HOH HOH . G 7 HOH A 63 663 512 HOH HOH . G 7 HOH A 64 664 464 HOH HOH . G 7 HOH A 65 665 475 HOH HOH . G 7 HOH A 66 666 507 HOH HOH . G 7 HOH A 67 667 491 HOH HOH . G 7 HOH A 68 668 496 HOH HOH . G 7 HOH A 69 669 526 HOH HOH . G 7 HOH A 70 670 503 HOH HOH . G 7 HOH A 71 671 499 HOH HOH . G 7 HOH A 72 672 505 HOH HOH . G 7 HOH A 73 673 506 HOH HOH . G 7 HOH A 74 674 504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . E 5 107.764 -20.661 265.131 1 34.55 ? O1 F6P 504 A 1 HETATM 2 C C1 F6P . . . E 5 108.663 -21.294 266.052 1 32.57 ? C1 F6P 504 A 1 HETATM 3 C C2 F6P . . . E 5 110.003 -20.549 265.988 1 32.22 ? C2 F6P 504 A 1 HETATM 4 O O2 F6P . . . E 5 110.891 -21.333 266.836 1 29.72 ? O2 F6P 504 A 1 HETATM 5 C C3 F6P . . . E 5 109.901 -19.059 266.327 1 32.03 ? C3 F6P 504 A 1 HETATM 6 O O3 F6P . . . E 5 109.928 -18.745 267.713 1 33.56 ? O3 F6P 504 A 1 HETATM 7 C C4 F6P . . . E 5 111.082 -18.457 265.606 1 31.81 ? C4 F6P 504 A 1 HETATM 8 O O4 F6P . . . E 5 110.968 -17.044 265.534 1 31.5 ? O4 F6P 504 A 1 HETATM 9 C C5 F6P . . . E 5 110.951 -19.168 264.286 1 30.94 ? C5 F6P 504 A 1 HETATM 10 O O5 F6P . . . E 5 110.508 -20.463 264.639 1 29.85 ? O5 F6P 504 A 1 HETATM 11 C C6 F6P . . . E 5 112.201 -19.328 263.478 1 32.17 ? C6 F6P 504 A 1 HETATM 12 O O6 F6P . . . E 5 111.924 -19.903 262.193 1 32.87 ? O6 F6P 504 A 1 HETATM 13 P P F6P . . . E 5 112.18 -18.942 260.921 1 40.54 ? P F6P 504 A 1 HETATM 14 O O1P F6P . . . E 5 111.806 -19.824 259.771 1 35.82 ? O1P F6P 504 A 1 HETATM 15 O O2P F6P . . . E 5 113.625 -18.47 260.956 1 35.47 ? O2P F6P 504 A 1 HETATM 16 O O3P F6P . . . E 5 111.215 -17.776 261.21 1 39.09 ? O3P F6P 504 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #