data_6ICJ
#
_model_server_result.job_id            iGnuuh_MaKXzHKU6F8eJnw 
_model_server_result.datetime_utc      '2025-02-05 16:54:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6icj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    6ICJ 
#
_exptl.entry_id    6ICJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              554.639 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2-butyl-5-[(3-tert-butyl-1,2,4-oxadiazol-5-yl)methyl]-6-methyl-3-{[2'-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)[1,1'-biphenyl]-4-yl]methyl}pyrimidin-4(3H)-one" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ICJ 
_cell.length_a            56.051 
_cell.length_b            87.03 
_cell.length_c            121.224 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ICJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H34 N6 O4' 
_chem_comp.formula_weight    554.639 
_chem_comp.id                A0L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2-butyl-5-[(3-tert-butyl-1,2,4-oxadiazol-5-yl)methyl]-6-methyl-3-{[2'-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)[1,1'-biphenyl]-4-yl]methyl}pyrimidin-4(3H)-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C41 C07 A0L sing 1 n n 
C17 C15 A0L sing 2 n n 
C01 C02 A0L sing 3 n n 
C07 N06 A0L sing 4 n n 
C07 C08 A0L doub 5 n n 
N06 C05 A0L doub 6 n n 
C03 C02 A0L sing 7 n n 
C03 C04 A0L sing 8 n n 
C15 C16 A0L sing 9 n n 
C15 C12 A0L sing 10 n n 
C15 C18 A0L sing 11 n n 
C12 N13 A0L doub 12 n y 
C12 N11 A0L sing 13 n y 
N13 O14 A0L sing 14 n y 
N11 C10 A0L doub 15 n y 
O14 C10 A0L sing 16 n y 
C10 C09 A0L sing 17 n n 
C09 C08 A0L sing 18 n n 
C08 C19 A0L sing 19 n n 
C05 C04 A0L sing 20 n n 
C05 N21 A0L sing 21 n n 
C19 N21 A0L sing 22 n n 
C19 O20 A0L doub 23 n n 
N21 C22 A0L sing 24 n n 
C28 C27 A0L doub 25 n y 
C28 C23 A0L sing 26 n y 
C27 C26 A0L sing 27 n y 
N36 O37 A0L sing 28 n n 
N36 C35 A0L doub 29 n n 
C22 C23 A0L sing 30 n n 
C23 C24 A0L doub 31 n y 
O37 C38 A0L sing 32 n n 
C26 C29 A0L sing 33 n n 
C26 C25 A0L doub 34 n y 
C29 C30 A0L doub 35 n y 
C29 C34 A0L sing 36 n y 
C35 C30 A0L sing 37 n n 
C35 N40 A0L sing 38 n n 
C30 C31 A0L sing 39 n y 
C34 C33 A0L doub 40 n y 
C31 C32 A0L doub 41 n y 
C33 C32 A0L sing 42 n y 
C24 C25 A0L sing 43 n y 
C38 N40 A0L sing 44 n n 
C38 O39 A0L doub 45 n n 
C17 H1 A0L sing 46 n n 
C17 H2 A0L sing 47 n n 
C17 H3 A0L sing 48 n n 
C22 H4 A0L sing 49 n n 
C22 H5 A0L sing 50 n n 
C24 H6 A0L sing 51 n n 
C28 H7 A0L sing 52 n n 
C01 H8 A0L sing 53 n n 
C01 H9 A0L sing 54 n n 
C01 H10 A0L sing 55 n n 
C02 H11 A0L sing 56 n n 
C02 H12 A0L sing 57 n n 
C03 H13 A0L sing 58 n n 
C03 H14 A0L sing 59 n n 
C04 H15 A0L sing 60 n n 
C04 H16 A0L sing 61 n n 
C09 H19 A0L sing 62 n n 
C09 H20 A0L sing 63 n n 
C16 H21 A0L sing 64 n n 
C16 H22 A0L sing 65 n n 
C16 H23 A0L sing 66 n n 
C18 H24 A0L sing 67 n n 
C18 H25 A0L sing 68 n n 
C18 H26 A0L sing 69 n n 
C25 H27 A0L sing 70 n n 
C27 H28 A0L sing 71 n n 
C31 H29 A0L sing 72 n n 
C32 H30 A0L sing 73 n n 
C33 H31 A0L sing 74 n n 
C34 H32 A0L sing 75 n n 
C41 H33 A0L sing 76 n n 
C41 H34 A0L sing 77 n n 
C41 H35 A0L sing 78 n n 
N40 H17 A0L sing 79 n n 
#
_atom_sites.entry_id                     6ICJ 
_atom_sites.fract_transf_matrix[1][1]    0.017841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 501 501 GOL GOL . 
D 3 GOL A 1 502 601 GOL GOL . 
E 4 A0L A 1 503 1 A0L LIG . 
F 5 HOH A 1 601 17 HOH HOH . 
F 5 HOH A 2 602 2 HOH HOH . 
F 5 HOH A 3 603 21 HOH HOH . 
F 5 HOH A 4 604 13 HOH HOH . 
F 5 HOH A 5 605 5 HOH HOH . 
F 5 HOH A 6 606 19 HOH HOH . 
F 5 HOH A 7 607 18 HOH HOH . 
F 5 HOH A 8 608 4 HOH HOH . 
F 5 HOH A 9 609 14 HOH HOH . 
F 5 HOH A 10 610 1 HOH HOH . 
F 5 HOH A 11 611 3 HOH HOH . 
F 5 HOH A 12 612 11 HOH HOH . 
F 5 HOH A 13 613 12 HOH HOH . 
F 5 HOH A 14 614 25 HOH HOH . 
F 5 HOH A 15 615 10 HOH HOH . 
F 5 HOH A 16 616 16 HOH HOH . 
F 5 HOH A 17 617 22 HOH HOH . 
F 5 HOH A 18 618 6 HOH HOH . 
F 5 HOH A 19 619 7 HOH HOH . 
F 5 HOH A 20 620 8 HOH HOH . 
F 5 HOH A 21 621 20 HOH HOH . 
F 5 HOH A 22 622 23 HOH HOH . 
F 5 HOH A 23 623 15 HOH HOH . 
F 5 HOH A 24 624 24 HOH HOH . 
G 5 HOH B 1 801 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A0L . . . E 4 -22.218 -15.239 9.372 1 75.13 ? C10 A0L 503 A 1 
HETATM 2 C C15 A0L . . . E 4 -23.631 -11.892 8.693 1 70.76 ? C15 A0L 503 A 1 
HETATM 3 C C17 A0L . . . E 4 -24.233 -11.899 7.276 1 71.01 ? C17 A0L 503 A 1 
HETATM 4 C C22 A0L . . . E 4 -25.881 -18.952 12.425 1 78.62 ? C22 A0L 503 A 1 
HETATM 5 C C24 A0L . . . E 4 -25.665 -21.188 13.654 1 79.19 ? C24 A0L 503 A 1 
HETATM 6 C C26 A0L . . . E 4 -24.126 -22.939 13.03 1 81.07 ? C26 A0L 503 A 1 
HETATM 7 C C28 A0L . . . E 4 -24.238 -20.869 11.749 1 81.77 ? C28 A0L 503 A 1 
HETATM 8 C C01 A0L . . . E 4 -28.041 -22.307 8.083 1 84.58 ? C01 A0L 503 A 1 
HETATM 9 C C02 A0L . . . E 4 -28.617 -21.251 9.03 1 84.05 ? C02 A0L 503 A 1 
HETATM 10 C C03 A0L . . . E 4 -28.06 -19.875 8.676 1 81.61 ? C03 A0L 503 A 1 
HETATM 11 C C04 A0L . . . E 4 -27.731 -19.079 9.943 1 80.19 ? C04 A0L 503 A 1 
HETATM 12 C C05 A0L . . . E 4 -26.3 -18.483 9.894 1 78.86 ? C05 A0L 503 A 1 
HETATM 13 C C07 A0L . . . E 4 -24.474 -17.405 8.491 1 77.18 ? C07 A0L 503 A 1 
HETATM 14 C C08 A0L . . . E 4 -23.618 -17.341 9.699 1 77.16 ? C08 A0L 503 A 1 
HETATM 15 C C09 A0L . . . E 4 -22.191 -16.756 9.621 1 76.81 ? C09 A0L 503 A 1 
HETATM 16 C C12 A0L . . . E 4 -22.819 -13.188 8.974 1 72.41 ? C12 A0L 503 A 1 
HETATM 17 C C16 A0L . . . E 4 -22.674 -10.707 8.799 1 70.18 ? C16 A0L 503 A 1 
HETATM 18 C C18 A0L . . . E 4 -24.706 -11.81 9.764 1 69.93 ? C18 A0L 503 A 1 
HETATM 19 C C19 A0L . . . E 4 -24.102 -17.85 11.011 1 77.9 ? C19 A0L 503 A 1 
HETATM 20 C C23 A0L . . . E 4 -25.233 -20.38 12.605 1 80.66 ? C23 A0L 503 A 1 
HETATM 21 C C25 A0L . . . E 4 -25.127 -22.461 13.866 1 79.78 ? C25 A0L 503 A 1 
HETATM 22 C C27 A0L . . . E 4 -23.697 -22.142 11.966 1 81.83 ? C27 A0L 503 A 1 
HETATM 23 C C29 A0L . . . E 4 -23.571 -24.373 13.277 1 81.22 ? C29 A0L 503 A 1 
HETATM 24 C C30 A0L . . . E 4 -22.22 -24.7 13.368 1 81.05 ? C30 A0L 503 A 1 
HETATM 25 C C31 A0L . . . E 4 -21.816 -26.008 13.588 1 81.27 ? C31 A0L 503 A 1 
HETATM 26 C C32 A0L . . . E 4 -22.748 -27.032 13.698 1 81.77 ? C32 A0L 503 A 1 
HETATM 27 C C33 A0L . . . E 4 -24.093 -26.728 13.591 1 82.05 ? C33 A0L 503 A 1 
HETATM 28 C C34 A0L . . . E 4 -24.492 -25.41 13.393 1 81.75 ? C34 A0L 503 A 1 
HETATM 29 C C35 A0L . . . E 4 -21.109 -23.651 13.303 1 80.68 ? C35 A0L 503 A 1 
HETATM 30 C C38 A0L . . . E 4 -19.783 -21.863 13.888 1 79.82 ? C38 A0L 503 A 1 
HETATM 31 C C41 A0L . . . E 4 -23.979 -16.88 7.118 1 76.72 ? C41 A0L 503 A 1 
HETATM 32 N N06 A0L . . . E 4 -25.801 -17.969 8.608 1 77.96 ? N06 A0L 503 A 1 
HETATM 33 N N11 A0L . . . E 4 -23.288 -14.453 9.156 1 73.59 ? N11 A0L 503 A 1 
HETATM 34 N N13 A0L . . . E 4 -21.5 -13.227 9.081 1 73.13 ? N13 A0L 503 A 1 
HETATM 35 N N21 A0L . . . E 4 -25.436 -18.425 11.108 1 78.72 ? N21 A0L 503 A 1 
HETATM 36 N N36 A0L . . . E 4 -20.04 -23.575 12.353 1 81.29 ? N36 A0L 503 A 1 
HETATM 37 N N40 A0L . . . E 4 -20.95 -22.615 14.259 1 79.51 ? N40 A0L 503 A 1 
HETATM 38 O O14 A0L . . . E 4 -21.139 -14.498 9.32 1 74.75 ? O14 A0L 503 A 1 
HETATM 39 O O20 A0L . . . E 4 -23.41 -17.8 11.985 1 78.05 ? O20 A0L 503 A 1 
HETATM 40 O O37 A0L . . . E 4 -19.232 -22.454 12.713 1 80.71 ? O37 A0L 503 A 1 
HETATM 41 O O39 A0L . . . E 4 -19.357 -20.912 14.469 1 79.33 ? O39 A0L 503 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           41 
#