data_6ICL # _model_server_result.job_id QzXsfzFCu-IDaqhdtUWX0w _model_server_result.datetime_utc '2024-12-03 12:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6icl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 6ICL # _exptl.entry_id 6ICL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ICL _cell.length_a 98.553 _cell.length_b 98.553 _cell.length_c 174.441 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ICL _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 87.2205 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 87.2205 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 87.2205 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 82 A CYS 64 1_555 B FE2 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A ND1 HIS 84 A HIS 66 1_555 B FE1 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A SG CYS 105 A CYS 87 1_555 B FE2 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A ND1 HIS 108 A HIS 90 1_555 B FE1 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 A NE2 HIS 197 A HIS 179 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 A NE2 HIS 202 A HIS 184 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc7 A OD1 ASP 314 A ASP 296 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 A OD2 ASP 314 A ASP 296 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 C FE FE . A FE 401 1_555 D O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 6ICL _atom_sites.fract_transf_matrix[1][1] 0.010147 _atom_sites.fract_transf_matrix[1][2] 0.005858 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 400 400 FES FES . C 3 FE A 1 401 401 FE FE . D 4 HOH A 1 501 56 HOH HOH . D 4 HOH A 2 502 123 HOH HOH . D 4 HOH A 3 503 132 HOH HOH . D 4 HOH A 4 504 61 HOH HOH . D 4 HOH A 5 505 143 HOH HOH . D 4 HOH A 6 506 28 HOH HOH . D 4 HOH A 7 507 27 HOH HOH . D 4 HOH A 8 508 54 HOH HOH . D 4 HOH A 9 509 83 HOH HOH . D 4 HOH A 10 510 144 HOH HOH . D 4 HOH A 11 511 8 HOH HOH . D 4 HOH A 12 512 80 HOH HOH . D 4 HOH A 13 513 26 HOH HOH . D 4 HOH A 14 514 127 HOH HOH . D 4 HOH A 15 515 30 HOH HOH . D 4 HOH A 16 516 52 HOH HOH . D 4 HOH A 17 517 68 HOH HOH . D 4 HOH A 18 518 51 HOH HOH . D 4 HOH A 19 519 125 HOH HOH . D 4 HOH A 20 520 10 HOH HOH . D 4 HOH A 21 521 15 HOH HOH . D 4 HOH A 22 522 19 HOH HOH . D 4 HOH A 23 523 101 HOH HOH . D 4 HOH A 24 524 74 HOH HOH . D 4 HOH A 25 525 103 HOH HOH . D 4 HOH A 26 526 45 HOH HOH . D 4 HOH A 27 527 67 HOH HOH . D 4 HOH A 28 528 31 HOH HOH . D 4 HOH A 29 529 25 HOH HOH . D 4 HOH A 30 530 95 HOH HOH . D 4 HOH A 31 531 155 HOH HOH . D 4 HOH A 32 532 70 HOH HOH . D 4 HOH A 33 533 71 HOH HOH . D 4 HOH A 34 534 17 HOH HOH . D 4 HOH A 35 535 134 HOH HOH . D 4 HOH A 36 536 75 HOH HOH . D 4 HOH A 37 537 62 HOH HOH . D 4 HOH A 38 538 115 HOH HOH . D 4 HOH A 39 539 97 HOH HOH . D 4 HOH A 40 540 16 HOH HOH . D 4 HOH A 41 541 112 HOH HOH . D 4 HOH A 42 542 92 HOH HOH . D 4 HOH A 43 543 38 HOH HOH . D 4 HOH A 44 544 91 HOH HOH . D 4 HOH A 45 545 34 HOH HOH . D 4 HOH A 46 546 37 HOH HOH . D 4 HOH A 47 547 117 HOH HOH . D 4 HOH A 48 548 50 HOH HOH . D 4 HOH A 49 549 107 HOH HOH . D 4 HOH A 50 550 139 HOH HOH . D 4 HOH A 51 551 2 HOH HOH . D 4 HOH A 52 552 47 HOH HOH . D 4 HOH A 53 553 39 HOH HOH . D 4 HOH A 54 554 11 HOH HOH . D 4 HOH A 55 555 121 HOH HOH . D 4 HOH A 56 556 18 HOH HOH . D 4 HOH A 57 557 5 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 24 HOH HOH . D 4 HOH A 60 560 44 HOH HOH . D 4 HOH A 61 561 7 HOH HOH . D 4 HOH A 62 562 48 HOH HOH . D 4 HOH A 63 563 69 HOH HOH . D 4 HOH A 64 564 63 HOH HOH . D 4 HOH A 65 565 53 HOH HOH . D 4 HOH A 66 566 133 HOH HOH . D 4 HOH A 67 567 88 HOH HOH . D 4 HOH A 68 568 82 HOH HOH . D 4 HOH A 69 569 77 HOH HOH . D 4 HOH A 70 570 43 HOH HOH . D 4 HOH A 71 571 14 HOH HOH . D 4 HOH A 72 572 116 HOH HOH . D 4 HOH A 73 573 146 HOH HOH . D 4 HOH A 74 574 9 HOH HOH . D 4 HOH A 75 575 22 HOH HOH . D 4 HOH A 76 576 12 HOH HOH . D 4 HOH A 77 577 120 HOH HOH . D 4 HOH A 78 578 105 HOH HOH . D 4 HOH A 79 579 21 HOH HOH . D 4 HOH A 80 580 1 HOH HOH . D 4 HOH A 81 581 124 HOH HOH . D 4 HOH A 82 582 4 HOH HOH . D 4 HOH A 83 583 57 HOH HOH . D 4 HOH A 84 584 35 HOH HOH . D 4 HOH A 85 585 111 HOH HOH . D 4 HOH A 86 586 13 HOH HOH . D 4 HOH A 87 587 55 HOH HOH . D 4 HOH A 88 588 128 HOH HOH . D 4 HOH A 89 589 6 HOH HOH . D 4 HOH A 90 590 152 HOH HOH . D 4 HOH A 91 591 100 HOH HOH . D 4 HOH A 92 592 58 HOH HOH . D 4 HOH A 93 593 3 HOH HOH . D 4 HOH A 94 594 64 HOH HOH . D 4 HOH A 95 595 73 HOH HOH . D 4 HOH A 96 596 153 HOH HOH . D 4 HOH A 97 597 94 HOH HOH . D 4 HOH A 98 598 131 HOH HOH . D 4 HOH A 99 599 81 HOH HOH . D 4 HOH A 100 600 79 HOH HOH . D 4 HOH A 101 601 148 HOH HOH . D 4 HOH A 102 602 118 HOH HOH . D 4 HOH A 103 603 36 HOH HOH . D 4 HOH A 104 604 109 HOH HOH . D 4 HOH A 105 605 32 HOH HOH . D 4 HOH A 106 606 20 HOH HOH . D 4 HOH A 107 607 154 HOH HOH . D 4 HOH A 108 608 41 HOH HOH . D 4 HOH A 109 609 84 HOH HOH . D 4 HOH A 110 610 72 HOH HOH . D 4 HOH A 111 611 156 HOH HOH . D 4 HOH A 112 612 141 HOH HOH . D 4 HOH A 113 613 129 HOH HOH . D 4 HOH A 114 614 29 HOH HOH . D 4 HOH A 115 615 122 HOH HOH . D 4 HOH A 116 616 46 HOH HOH . D 4 HOH A 117 617 102 HOH HOH . D 4 HOH A 118 618 33 HOH HOH . D 4 HOH A 119 619 42 HOH HOH . D 4 HOH A 120 620 23 HOH HOH . D 4 HOH A 121 621 66 HOH HOH . D 4 HOH A 122 622 142 HOH HOH . D 4 HOH A 123 623 87 HOH HOH . D 4 HOH A 124 624 59 HOH HOH . D 4 HOH A 125 625 114 HOH HOH . D 4 HOH A 126 626 150 HOH HOH . D 4 HOH A 127 627 86 HOH HOH . D 4 HOH A 128 628 98 HOH HOH . D 4 HOH A 129 629 106 HOH HOH . D 4 HOH A 130 630 99 HOH HOH . D 4 HOH A 131 631 96 HOH HOH . D 4 HOH A 132 632 119 HOH HOH . D 4 HOH A 133 633 140 HOH HOH . D 4 HOH A 134 634 108 HOH HOH . D 4 HOH A 135 635 40 HOH HOH . D 4 HOH A 136 636 60 HOH HOH . D 4 HOH A 137 637 85 HOH HOH . D 4 HOH A 138 638 151 HOH HOH . D 4 HOH A 139 639 65 HOH HOH . D 4 HOH A 140 640 145 HOH HOH . D 4 HOH A 141 641 93 HOH HOH . D 4 HOH A 142 642 78 HOH HOH . D 4 HOH A 143 643 90 HOH HOH . D 4 HOH A 144 644 149 HOH HOH . D 4 HOH A 145 645 113 HOH HOH . D 4 HOH A 146 646 135 HOH HOH . D 4 HOH A 147 647 76 HOH HOH . D 4 HOH A 148 648 138 HOH HOH . D 4 HOH A 149 649 136 HOH HOH . D 4 HOH A 150 650 110 HOH HOH . D 4 HOH A 151 651 147 HOH HOH . D 4 HOH A 152 652 104 HOH HOH . D 4 HOH A 153 653 89 HOH HOH . D 4 HOH A 154 654 126 HOH HOH . D 4 HOH A 155 655 130 HOH HOH . D 4 HOH A 156 656 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . B 2 -25.65 14.872 65.717 1 47.71 ? FE1 FES 400 A 1 HETATM 2 FE FE2 FES . . . B 2 -23.498 16.515 65.208 1 33.81 ? FE2 FES 400 A 1 HETATM 3 S S1 FES . . . B 2 -23.443 14.38 65.757 1 36.14 ? S1 FES 400 A 1 HETATM 4 S S2 FES . . . B 2 -25.649 16.942 65.045 1 36.63 ? S2 FES 400 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 452 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #