data_6ICM # _model_server_result.job_id H-Irv-8ZDwr83vmRip86og _model_server_result.datetime_utc '2024-11-06 14:31:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6icm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 6ICM # _exptl.entry_id 6ICM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ICM _cell.length_a 118.265 _cell.length_b 118.265 _cell.length_c 455.692 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ICM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -59.1325 102.420494 75.948667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 80 A CYS 62 1_555 E FE1 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A ND1 HIS 82 A HIS 64 1_555 E FE2 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A SG CYS 99 A CYS 81 1_555 E FE1 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A ND1 HIS 102 A HIS 84 1_555 E FE2 FES . A FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc5 A NE2 HIS 191 A HIS 173 1_555 F FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc6 A NE2 HIS 196 A HIS 178 1_555 F FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc7 A OD1 ASP 307 A ASP 289 1_555 F FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc8 A OD2 ASP 307 A ASP 289 1_555 F FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc9 F FE FE . A FE 401 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc10 B SG CYS 80 B CYS 62 1_555 G FE1 FES . B FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc11 B ND1 HIS 82 B HIS 64 1_555 G FE2 FES . B FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc12 B SG CYS 99 B CYS 81 1_555 G FE1 FES . B FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc13 B ND1 HIS 102 B HIS 84 1_555 G FE2 FES . B FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 B NE2 HIS 191 B HIS 173 1_555 H FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc15 B OD1 ASP 307 B ASP 289 1_555 H FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc16 B OD2 ASP 307 B ASP 289 1_555 H FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc17 H FE FE . B FE 401 1_555 N O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc18 C SG CYS 80 C CYS 62 1_555 I FE2 FES . C FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc19 C ND1 HIS 82 C HIS 64 1_555 I FE1 FES . C FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc20 C SG CYS 99 C CYS 81 1_555 I FE2 FES . C FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc21 C ND1 HIS 102 C HIS 84 1_555 I FE1 FES . C FES 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc22 C NE2 HIS 196 C HIS 178 1_555 J FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc23 C OD1 ASP 307 C ASP 289 1_555 J FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc24 C OD2 ASP 307 C ASP 289 1_555 J FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc25 J FE FE . C FE 401 1_555 O O HOH . C HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc26 D O CYS 36 D CYS 537 1_555 K FE1 FES . D FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc27 D SG CYS 36 D CYS 537 1_555 K FE1 FES . D FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc28 D SG CYS 41 D CYS 542 1_555 K FE1 FES . D FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc29 D SG CYS 44 D CYS 545 1_555 K FE2 FES . D FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc30 D SG CYS 74 D CYS 575 1_555 K FE2 FES . D FES 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 6ICM _atom_sites.fract_transf_matrix[1][1] 0.008456 _atom_sites.fract_transf_matrix[1][2] 0.004882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FES A 1 400 400 FES FES . F 4 FE A 1 401 401 FE FE . G 3 FES B 1 400 400 FES FES . H 4 FE B 1 401 401 FE FE . I 3 FES C 1 400 400 FES FES . J 4 FE C 1 401 401 FE FE . K 3 FES D 1 601 500 FES FES . L 5 PG4 D 1 602 1 PG4 PG4 . M 6 HOH A 1 501 1 HOH HOH . N 6 HOH B 1 501 2 HOH HOH . O 6 HOH C 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . G 3 16.943 41.087 49.882 1 52.39 ? FE1 FES 400 B 1 HETATM 2 FE FE2 FES . . . G 3 14.45 39.589 49.22 1 61.6 ? FE2 FES 400 B 1 HETATM 3 S S1 FES . . . G 3 15.507 39.953 51.085 1 54.64 ? S1 FES 400 B 1 HETATM 4 S S2 FES . . . G 3 15.709 40.974 48.086 1 51.92 ? S2 FES 400 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #