data_6ICY
#
_model_server_result.job_id            t1oZ_K8u98PwV_qUqbIXYg 
_model_server_result.datetime_utc      '2024-10-17 12:20:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6icy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6ICY 
#
_exptl.entry_id    6ICY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ICY 
_cell.length_a            116.544 
_cell.length_b            116.544 
_cell.length_c            294.996 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ICY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.272 -100.930065 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 116.544 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 3 1_555 B SG CYS 137 B CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 42 A CYS 41 1_555 A SG CYS 268 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 54 A CYS 53 1_555 A SG CYS 66 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 87 A CYS 86 1_555 A SG CYS 129 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 272 A CYS 271 1_555 A SG CYS 296 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 144 B CYS 465 1_555 B SG CYS 148 B CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 28 A ASN 27 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 231 A ASN 230 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 B ND2 ASN 82 B ASN 403 1_555 E C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6ICY 
_atom_sites.fract_transf_matrix[1][1]    0.00858 
_atom_sites.fract_transf_matrix[1][2]    0.004954 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 601 NAG NAG . 
D 3 NAG A 1 602 602 NAG NAG . 
E 3 NAG B 1 501 603 NAG NAG . 
F 4 HOH A 1 701 86 HOH HOH . 
F 4 HOH A 2 702 7 HOH HOH . 
F 4 HOH A 3 703 17 HOH HOH . 
F 4 HOH A 4 704 29 HOH HOH . 
F 4 HOH A 5 705 107 HOH HOH . 
F 4 HOH A 6 706 106 HOH HOH . 
F 4 HOH A 7 707 21 HOH HOH . 
F 4 HOH A 8 708 2 HOH HOH . 
F 4 HOH A 9 709 39 HOH HOH . 
F 4 HOH A 10 710 46 HOH HOH . 
F 4 HOH A 11 711 53 HOH HOH . 
F 4 HOH A 12 712 85 HOH HOH . 
F 4 HOH A 13 713 65 HOH HOH . 
F 4 HOH A 14 714 78 HOH HOH . 
F 4 HOH A 15 715 23 HOH HOH . 
F 4 HOH A 16 716 93 HOH HOH . 
F 4 HOH A 17 717 50 HOH HOH . 
F 4 HOH A 18 718 64 HOH HOH . 
F 4 HOH A 19 719 99 HOH HOH . 
F 4 HOH A 20 720 20 HOH HOH . 
F 4 HOH A 21 721 30 HOH HOH . 
F 4 HOH A 22 722 45 HOH HOH . 
F 4 HOH A 23 723 68 HOH HOH . 
F 4 HOH A 24 724 81 HOH HOH . 
F 4 HOH A 25 725 88 HOH HOH . 
F 4 HOH A 26 726 31 HOH HOH . 
F 4 HOH A 27 727 82 HOH HOH . 
F 4 HOH A 28 728 11 HOH HOH . 
F 4 HOH A 29 729 15 HOH HOH . 
F 4 HOH A 30 730 55 HOH HOH . 
F 4 HOH A 31 731 63 HOH HOH . 
F 4 HOH A 32 732 40 HOH HOH . 
F 4 HOH A 33 733 98 HOH HOH . 
F 4 HOH A 34 734 49 HOH HOH . 
F 4 HOH A 35 735 54 HOH HOH . 
F 4 HOH A 36 736 18 HOH HOH . 
F 4 HOH A 37 737 96 HOH HOH . 
F 4 HOH A 38 738 3 HOH HOH . 
F 4 HOH A 39 739 38 HOH HOH . 
F 4 HOH A 40 740 57 HOH HOH . 
F 4 HOH A 41 741 22 HOH HOH . 
F 4 HOH A 42 742 48 HOH HOH . 
F 4 HOH A 43 743 9 HOH HOH . 
F 4 HOH A 44 744 14 HOH HOH . 
F 4 HOH A 45 745 32 HOH HOH . 
F 4 HOH A 46 746 5 HOH HOH . 
F 4 HOH A 47 747 59 HOH HOH . 
F 4 HOH A 48 748 33 HOH HOH . 
F 4 HOH A 49 749 36 HOH HOH . 
F 4 HOH A 50 750 105 HOH HOH . 
F 4 HOH A 51 751 74 HOH HOH . 
F 4 HOH A 52 752 37 HOH HOH . 
F 4 HOH A 53 753 89 HOH HOH . 
F 4 HOH A 54 754 103 HOH HOH . 
F 4 HOH A 55 755 24 HOH HOH . 
F 4 HOH A 56 756 28 HOH HOH . 
F 4 HOH A 57 757 95 HOH HOH . 
F 4 HOH A 58 758 52 HOH HOH . 
F 4 HOH A 59 759 76 HOH HOH . 
F 4 HOH A 60 760 71 HOH HOH . 
F 4 HOH A 61 761 60 HOH HOH . 
F 4 HOH A 62 762 41 HOH HOH . 
F 4 HOH A 63 763 104 HOH HOH . 
F 4 HOH A 64 764 42 HOH HOH . 
F 4 HOH A 65 765 13 HOH HOH . 
F 4 HOH A 66 766 94 HOH HOH . 
F 4 HOH A 67 767 35 HOH HOH . 
F 4 HOH A 68 768 61 HOH HOH . 
F 4 HOH A 69 769 79 HOH HOH . 
F 4 HOH A 70 770 87 HOH HOH . 
F 4 HOH A 71 771 77 HOH HOH . 
F 4 HOH A 72 772 91 HOH HOH . 
F 4 HOH A 73 773 44 HOH HOH . 
F 4 HOH A 74 774 73 HOH HOH . 
F 4 HOH A 75 775 108 HOH HOH . 
F 4 HOH A 76 776 67 HOH HOH . 
F 4 HOH A 77 777 100 HOH HOH . 
F 4 HOH A 78 778 8 HOH HOH . 
F 4 HOH A 79 779 101 HOH HOH . 
F 4 HOH A 80 780 56 HOH HOH . 
G 4 HOH B 1 601 16 HOH HOH . 
G 4 HOH B 2 602 90 HOH HOH . 
G 4 HOH B 3 603 83 HOH HOH . 
G 4 HOH B 4 604 58 HOH HOH . 
G 4 HOH B 5 605 97 HOH HOH . 
G 4 HOH B 6 606 51 HOH HOH . 
G 4 HOH B 7 607 92 HOH HOH . 
G 4 HOH B 8 608 66 HOH HOH . 
G 4 HOH B 9 609 43 HOH HOH . 
G 4 HOH B 10 610 69 HOH HOH . 
G 4 HOH B 11 611 70 HOH HOH . 
G 4 HOH B 12 612 19 HOH HOH . 
G 4 HOH B 13 613 4 HOH HOH . 
G 4 HOH B 14 614 1 HOH HOH . 
G 4 HOH B 15 615 62 HOH HOH . 
G 4 HOH B 16 616 10 HOH HOH . 
G 4 HOH B 17 617 47 HOH HOH . 
G 4 HOH B 18 618 12 HOH HOH . 
G 4 HOH B 19 619 25 HOH HOH . 
G 4 HOH B 20 620 27 HOH HOH . 
G 4 HOH B 21 621 102 HOH HOH . 
G 4 HOH B 22 622 26 HOH HOH . 
G 4 HOH B 23 623 6 HOH HOH . 
G 4 HOH B 24 624 72 HOH HOH . 
G 4 HOH B 25 625 34 HOH HOH . 
G 4 HOH B 26 626 80 HOH HOH . 
G 4 HOH B 27 627 75 HOH HOH . 
G 4 HOH B 28 628 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 35.019 -32.403 -32.569 1 74.08 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 3 34.259 -33.6 -33.145 1 87.8 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 3 33.239 -34.117 -32.136 1 94.46 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 3 33.911 -34.408 -30.8 1 102.29 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 3 34.674 -33.179 -30.318 1 106.18 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 3 35.457 -33.429 -29.05 1 119.81 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 3 34.184 -33.419 -35.591 1 91.81 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 3 33.368 -33.006 -36.778 1 88.75 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 3 33.607 -33.251 -34.397 1 89.94 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 3 32.632 -35.301 -32.642 1 91.78 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 3 32.933 -34.767 -29.83 1 98.85 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 3 35.621 -32.77 -31.317 1 88.3 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 3 34.798 -34.368 -28.21 1 125.97 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 3 35.314 -33.883 -35.708 1 94.49 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           14 
#