data_6IED # _model_server_result.job_id f-mZrYT8VXcl3MzSTHzHmw _model_server_result.datetime_utc '2024-11-23 09:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ied # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6IED # _exptl.entry_id 6IED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IED _cell.length_a 90.528 _cell.length_b 90.528 _cell.length_c 147.23 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IED _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 35 1_555 A SG CYS 48 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 197 A CYS 191 1_555 A SG CYS 203 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A SD MET 2 A MET -4 1_555 C CU CU . A CU 602 9_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc2 A OE2 GLU 4 A GLU -2 1_555 C CU CU . A CU 602 9_544 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc3 A OD1 ASP 151 A ASP 145 1_555 C CU CU . A CU 602 9_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A NE2 HIS 215 A HIS 209 1_555 C CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A NE2 HIS 222 A HIS 216 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A NE2 HIS 284 A HIS 278 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6IED _atom_sites.fract_transf_matrix[1][1] 0.011046 _atom_sites.fract_transf_matrix[1][2] 0.006378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 CU A 1 602 602 CU CU2 . D 4 SO4 A 1 603 603 SO4 SO4 . E 4 SO4 A 1 604 604 SO4 SO4 . F 5 OLC A 1 605 610 OLC OLC . G 5 OLC A 1 606 612 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 6.114 -22.385 11.468 1 38.3 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 5.003 -22.426 6.806 1 37.54 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 2.18 -26.321 7.51 1 39.24 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 3.329 -26.222 12.187 1 38.78 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 6.08 -22.039 10.131 1 37.11 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 6.796 -20.943 9.591 1 36.71 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 6.489 -20.947 8.263 1 37.44 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 5.566 -22.061 7.988 1 38.2 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 6.983 -19.975 7.177 1 35.71 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 7.711 -19.956 10.332 1 36.44 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 9.02 -20.557 10.753 1 37.45 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 9.99 -19.646 11.511 1 38.77 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 11.104 -20.13 11.914 1 41.25 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 9.672 -18.488 11.706 1 37.88 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 4.112 -23.504 6.541 1 36.83 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 3.567 -23.809 5.238 1 37.19 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 2.723 -24.993 5.469 1 37.43 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 2.836 -25.264 6.856 1 37.77 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 3.83 -23.058 3.968 1 35.33 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 1.953 -25.671 4.412 1 37.04 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 1.924 -26.975 4.202 1 35.48 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 2.251 -26.625 8.856 1 39.46 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 1.518 -27.76 9.461 1 39.32 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 1.837 -27.757 10.857 1 39.94 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 2.779 -26.577 10.992 1 39.78 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 0.602 -28.731 8.7 1 37.25 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 1.417 -28.607 11.866 1 41.45 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 0.438 -29.389 12.194 1 42.51 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 4.19 -25.171 12.411 1 37.63 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 4.758 -24.829 13.772 1 37 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 5.555 -23.718 13.539 1 37.79 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 5.464 -23.417 12.087 1 38.61 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 4.458 -25.596 15.058 1 33.16 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 6.38 -22.94 14.555 1 37.13 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 7.741 -23.543 14.743 1 36.4 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 8.674 -22.705 15.507 1 37.9 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 9.828 -22.45 15.022 1 39.93 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 8.333 -22.264 16.624 1 36.75 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 5.324 -22.734 9.165 1 37.56 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 3.698 -24.347 7.513 1 37.75 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 2.993 -25.953 9.81 1 39.65 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 4.636 -24.308 11.458 1 38.9 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 4.16 -24.341 9.474 1 39.34 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #