data_6IED # _model_server_result.job_id MJFXKVzUSVpeTdSx8pMc4g _model_server_result.datetime_utc '2024-11-21 14:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ied # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 6IED # _exptl.entry_id 6IED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IED _cell.length_a 90.528 _cell.length_b 90.528 _cell.length_c 147.23 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IED _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 35 1_555 A SG CYS 48 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 197 A CYS 191 1_555 A SG CYS 203 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A SD MET 2 A MET -4 1_555 C CU CU . A CU 602 9_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc2 A OE2 GLU 4 A GLU -2 1_555 C CU CU . A CU 602 9_544 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc3 A OD1 ASP 151 A ASP 145 1_555 C CU CU . A CU 602 9_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A NE2 HIS 215 A HIS 209 1_555 C CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A NE2 HIS 222 A HIS 216 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A NE2 HIS 284 A HIS 278 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 317 n n C10 C9 OLC doub 318 n n C10 C11 OLC sing 319 n n C9 C8 OLC sing 320 n n C17 C16 OLC sing 321 z n C11 C12 OLC sing 322 n n C8 C7 OLC sing 323 n n C24 C22 OLC sing 324 n n C24 O25 OLC sing 325 n n C16 C15 OLC sing 326 n n C12 C13 OLC sing 327 n n C7 C6 OLC sing 328 n n C15 C14 OLC sing 329 n n C13 C14 OLC sing 330 n n C6 C5 OLC sing 331 n n C5 C4 OLC sing 332 n n C4 C3 OLC sing 333 n n C3 C2 OLC sing 334 n n C2 C1 OLC sing 335 n n C21 C22 OLC sing 336 n n C21 O20 OLC sing 337 n n C1 O19 OLC doub 338 n n C1 O20 OLC sing 339 n n C22 O23 OLC sing 340 n n C18 H18 OLC sing 341 n n C18 H18A OLC sing 342 n n C18 H18B OLC sing 343 n n C10 H10 OLC sing 344 n n C9 H9 OLC sing 345 n n C17 H17 OLC sing 346 n n C17 H17A OLC sing 347 n n C11 H11 OLC sing 348 n n C11 H11A OLC sing 349 n n C8 H8 OLC sing 350 n n C8 H8A OLC sing 351 n n C24 H24 OLC sing 352 n n C24 H24A OLC sing 353 n n C16 H16 OLC sing 354 n n C16 H16A OLC sing 355 n n C12 H12 OLC sing 356 n n C12 H12A OLC sing 357 n n C7 H7 OLC sing 358 n n C7 H7A OLC sing 359 n n C15 H15 OLC sing 360 n n C15 H15A OLC sing 361 n n C13 H13 OLC sing 362 n n C13 H13A OLC sing 363 n n C6 H6 OLC sing 364 n n C6 H6A OLC sing 365 n n C14 H14 OLC sing 366 n n C14 H14A OLC sing 367 n n C5 H5 OLC sing 368 n n C5 H5A OLC sing 369 n n C4 H4 OLC sing 370 n n C4 H4A OLC sing 371 n n C3 H3 OLC sing 372 n n C3 H3A OLC sing 373 n n C2 H2 OLC sing 374 n n C2 H2A OLC sing 375 n n C21 H21 OLC sing 376 n n C21 H21A OLC sing 377 n n C22 H22 OLC sing 378 n n O25 HO25 OLC sing 379 n n O23 HO23 OLC sing 380 n n # _atom_sites.entry_id 6IED _atom_sites.fract_transf_matrix[1][1] 0.011046 _atom_sites.fract_transf_matrix[1][2] 0.006378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 CU A 1 602 602 CU CU2 . D 4 SO4 A 1 603 603 SO4 SO4 . E 4 SO4 A 1 604 604 SO4 SO4 . F 5 OLC A 1 605 610 OLC OLC . G 5 OLC A 1 606 612 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 OLC . . . G 5 23.069 -24.222 -4.352 1 57.76 ? C8 OLC 606 A 1 HETATM 2 C C24 OLC . . . G 5 20.582 -23.464 -16.257 1 63.75 ? C24 OLC 606 A 1 HETATM 3 C C7 OLC . . . G 5 22.293 -23.136 -5.114 1 57.58 ? C7 OLC 606 A 1 HETATM 4 C C6 OLC . . . G 5 22.231 -23.42 -6.609 1 57.55 ? C6 OLC 606 A 1 HETATM 5 C C5 OLC . . . G 5 21.183 -22.559 -7.312 1 57.73 ? C5 OLC 606 A 1 HETATM 6 C C4 OLC . . . G 5 21.481 -22.478 -8.806 1 59.45 ? C4 OLC 606 A 1 HETATM 7 C C3 OLC . . . G 5 20.308 -21.881 -9.597 1 60.78 ? C3 OLC 606 A 1 HETATM 8 C C2 OLC . . . G 5 20.609 -21.795 -11.122 1 62.56 ? C2 OLC 606 A 1 HETATM 9 C C21 OLC . . . G 5 20.172 -24.374 -13.96 1 62.89 ? C21 OLC 606 A 1 HETATM 10 C C1 OLC . . . G 5 20.444 -23.14 -11.9 1 63.34 ? C1 OLC 606 A 1 HETATM 11 C C22 OLC . . . G 5 19.8 -24.503 -15.458 1 63.85 ? C22 OLC 606 A 1 HETATM 12 O O19 OLC . . . G 5 20.569 -24.223 -11.312 1 65.72 ? O19 OLC 606 A 1 HETATM 13 O O25 OLC . . . G 5 20.649 -23.512 -17.68 1 66.3 ? O25 OLC 606 A 1 HETATM 14 O O23 OLC . . . G 5 19.861 -25.771 -16.135 1 63.49 ? O23 OLC 606 A 1 HETATM 15 O O20 OLC . . . G 5 20.136 -23.083 -13.308 1 62.95 ? O20 OLC 606 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #