data_6IEH # _model_server_result.job_id 6kmOz2_1dRWPEqJ3K43h8w _model_server_result.datetime_utc '2025-07-15 13:08:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ieh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 6IEH # _exptl.entry_id 6IEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.49 _cell.angle_gamma 90 _cell.entry_id 6IEH _cell.length_a 148.305 _cell.length_b 113.728 _cell.length_c 80.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 604 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 667 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id NZ _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 653 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 716 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.265 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6IEH _atom_sites.fract_transf_matrix[1][1] 0.006743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000767 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL B 1 1101 1 CL CL . D 4 ATP B 1 1102 501 ATP ATP . E 5 HOH B 1 1201 31 HOH HOH . E 5 HOH B 2 1202 18 HOH HOH . E 5 HOH B 3 1203 14 HOH HOH . E 5 HOH B 4 1204 4 HOH HOH . E 5 HOH B 5 1205 10 HOH HOH . E 5 HOH B 6 1206 17 HOH HOH . E 5 HOH B 7 1207 21 HOH HOH . E 5 HOH B 8 1208 22 HOH HOH . E 5 HOH B 9 1209 20 HOH HOH . E 5 HOH B 10 1210 23 HOH HOH . E 5 HOH B 11 1211 5 HOH HOH . E 5 HOH B 12 1212 27 HOH HOH . E 5 HOH B 13 1213 15 HOH HOH . E 5 HOH B 14 1214 28 HOH HOH . E 5 HOH B 15 1215 16 HOH HOH . E 5 HOH B 16 1216 13 HOH HOH . E 5 HOH B 17 1217 9 HOH HOH . E 5 HOH B 18 1218 3 HOH HOH . E 5 HOH B 19 1219 30 HOH HOH . E 5 HOH B 20 1220 12 HOH HOH . E 5 HOH B 21 1221 29 HOH HOH . E 5 HOH B 22 1222 24 HOH HOH . E 5 HOH B 23 1223 7 HOH HOH . E 5 HOH B 24 1224 19 HOH HOH . E 5 HOH B 25 1225 11 HOH HOH . E 5 HOH B 26 1226 8 HOH HOH . E 5 HOH B 27 1227 26 HOH HOH . F 5 HOH A 1 301 33 HOH HOH . F 5 HOH A 2 302 34 HOH HOH . F 5 HOH A 3 303 6 HOH HOH . F 5 HOH A 4 304 32 HOH HOH . F 5 HOH A 5 305 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 -19.06 -27.697 1.552 1 62.32 ? PG ATP 1102 B 1 HETATM 2 O O1G ATP . . . D 4 -19.429 -26.435 0.919 1 41.15 ? O1G ATP 1102 B 1 HETATM 3 O O2G ATP . . . D 4 -17.661 -27.663 1.959 1 53.12 ? O2G ATP 1102 B 1 HETATM 4 O O3G ATP . . . D 4 -19.929 -28.242 2.57 1 41.42 ? O3G ATP 1102 B 1 HETATM 5 P PB ATP . . . D 4 -19.547 -30.232 0.058 1 43.58 ? PB ATP 1102 B 1 HETATM 6 O O1B ATP . . . D 4 -20.199 -30.312 -1.207 1 33.9 ? O1B ATP 1102 B 1 HETATM 7 O O2B ATP . . . D 4 -20.381 -30.76 1.087 1 43.24 ? O2B ATP 1102 B 1 HETATM 8 O O3B ATP . . . D 4 -19.196 -28.717 0.338 1 51.19 ? O3B ATP 1102 B 1 HETATM 9 P PA ATP . . . D 4 -16.822 -30.674 -0.335 1 44.53 ? PA ATP 1102 B 1 HETATM 10 O O1A ATP . . . D 4 -16.207 -30.518 0.932 1 52.09 ? O1A ATP 1102 B 1 HETATM 11 O O2A ATP . . . D 4 -16.599 -29.672 -1.347 1 45.58 ? O2A ATP 1102 B 1 HETATM 12 O O3A ATP . . . D 4 -18.241 -31.072 0.032 1 38.72 ? O3A ATP 1102 B 1 HETATM 13 O O5' ATP . . . D 4 -16.528 -32.045 -0.907 1 36.27 ? O5' ATP 1102 B 1 HETATM 14 C C5' ATP . . . D 4 -16.546 -33.084 0.013 1 37.25 ? C5' ATP 1102 B 1 HETATM 15 C C4' ATP . . . D 4 -15.543 -34.175 -0.307 1 40 ? C4' ATP 1102 B 1 HETATM 16 O O4' ATP . . . D 4 -15.874 -34.74 -1.515 1 39.59 ? O4' ATP 1102 B 1 HETATM 17 C C3' ATP . . . D 4 -14.117 -33.735 -0.492 1 46.6 ? C3' ATP 1102 B 1 HETATM 18 O O3' ATP . . . D 4 -13.279 -34.347 0.48 1 47.18 ? O3' ATP 1102 B 1 HETATM 19 C C2' ATP . . . D 4 -13.757 -34.112 -1.885 1 35.3 ? C2' ATP 1102 B 1 HETATM 20 O O2' ATP . . . D 4 -12.45 -34.613 -1.984 1 38.67 ? O2' ATP 1102 B 1 HETATM 21 C C1' ATP . . . D 4 -14.723 -35.201 -2.14 1 37.33 ? C1' ATP 1102 B 1 HETATM 22 N N9 ATP . . . D 4 -15.156 -35.375 -3.529 1 47.63 ? N9 ATP 1102 B 1 HETATM 23 C C8 ATP . . . D 4 -15.899 -34.561 -4.237 1 45.73 ? C8 ATP 1102 B 1 HETATM 24 N N7 ATP . . . D 4 -16.132 -35.029 -5.439 1 38.86 ? N7 ATP 1102 B 1 HETATM 25 C C5 ATP . . . D 4 -15.542 -36.178 -5.52 1 41.43 ? C5 ATP 1102 B 1 HETATM 26 C C6 ATP . . . D 4 -15.407 -37.205 -6.52 1 47.71 ? C6 ATP 1102 B 1 HETATM 27 N N6 ATP . . . D 4 -15.936 -37.149 -7.729 1 44.4 ? N6 ATP 1102 B 1 HETATM 28 N N1 ATP . . . D 4 -14.707 -38.255 -6.196 1 53.14 ? N1 ATP 1102 B 1 HETATM 29 C C2 ATP . . . D 4 -14.145 -38.376 -5.019 1 48.42 ? C2 ATP 1102 B 1 HETATM 30 N N3 ATP . . . D 4 -14.247 -37.49 -4.081 1 43.1 ? N3 ATP 1102 B 1 HETATM 31 C C4 ATP . . . D 4 -14.917 -36.397 -4.27 1 43.7 ? C4 ATP 1102 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 595 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #