data_6IER # _model_server_result.job_id '_mBfG4mk72R8Ob5jsU6Odw' _model_server_result.datetime_utc '2024-12-03 14:41:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ier # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6IER # _exptl.entry_id 6IER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IER _cell.length_a 122.99 _cell.length_b 122.99 _cell.length_c 48.76 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IER _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.495 106.512464 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 6IER _atom_sites.fract_transf_matrix[1][1] 0.008131 _atom_sites.fract_transf_matrix[1][2] 0.004694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 501 1 TRS TRS . C 3 HOH A 1 601 80 HOH HOH . C 3 HOH A 2 602 43 HOH HOH . C 3 HOH A 3 603 132 HOH HOH . C 3 HOH A 4 604 111 HOH HOH . C 3 HOH A 5 605 25 HOH HOH . C 3 HOH A 6 606 40 HOH HOH . C 3 HOH A 7 607 73 HOH HOH . C 3 HOH A 8 608 52 HOH HOH . C 3 HOH A 9 609 76 HOH HOH . C 3 HOH A 10 610 7 HOH HOH . C 3 HOH A 11 611 86 HOH HOH . C 3 HOH A 12 612 60 HOH HOH . C 3 HOH A 13 613 81 HOH HOH . C 3 HOH A 14 614 59 HOH HOH . C 3 HOH A 15 615 57 HOH HOH . C 3 HOH A 16 616 4 HOH HOH . C 3 HOH A 17 617 14 HOH HOH . C 3 HOH A 18 618 31 HOH HOH . C 3 HOH A 19 619 24 HOH HOH . C 3 HOH A 20 620 46 HOH HOH . C 3 HOH A 21 621 112 HOH HOH . C 3 HOH A 22 622 34 HOH HOH . C 3 HOH A 23 623 42 HOH HOH . C 3 HOH A 24 624 66 HOH HOH . C 3 HOH A 25 625 45 HOH HOH . C 3 HOH A 26 626 107 HOH HOH . C 3 HOH A 27 627 55 HOH HOH . C 3 HOH A 28 628 106 HOH HOH . C 3 HOH A 29 629 8 HOH HOH . C 3 HOH A 30 630 44 HOH HOH . C 3 HOH A 31 631 82 HOH HOH . C 3 HOH A 32 632 19 HOH HOH . C 3 HOH A 33 633 77 HOH HOH . C 3 HOH A 34 634 54 HOH HOH . C 3 HOH A 35 635 125 HOH HOH . C 3 HOH A 36 636 110 HOH HOH . C 3 HOH A 37 637 56 HOH HOH . C 3 HOH A 38 638 137 HOH HOH . C 3 HOH A 39 639 15 HOH HOH . C 3 HOH A 40 640 69 HOH HOH . C 3 HOH A 41 641 71 HOH HOH . C 3 HOH A 42 642 120 HOH HOH . C 3 HOH A 43 643 116 HOH HOH . C 3 HOH A 44 644 16 HOH HOH . C 3 HOH A 45 645 131 HOH HOH . C 3 HOH A 46 646 2 HOH HOH . C 3 HOH A 47 647 84 HOH HOH . C 3 HOH A 48 648 47 HOH HOH . C 3 HOH A 49 649 21 HOH HOH . C 3 HOH A 50 650 62 HOH HOH . C 3 HOH A 51 651 92 HOH HOH . C 3 HOH A 52 652 135 HOH HOH . C 3 HOH A 53 653 99 HOH HOH . C 3 HOH A 54 654 68 HOH HOH . C 3 HOH A 55 655 94 HOH HOH . C 3 HOH A 56 656 20 HOH HOH . C 3 HOH A 57 657 78 HOH HOH . C 3 HOH A 58 658 13 HOH HOH . C 3 HOH A 59 659 30 HOH HOH . C 3 HOH A 60 660 58 HOH HOH . C 3 HOH A 61 661 100 HOH HOH . C 3 HOH A 62 662 75 HOH HOH . C 3 HOH A 63 663 26 HOH HOH . C 3 HOH A 64 664 18 HOH HOH . C 3 HOH A 65 665 3 HOH HOH . C 3 HOH A 66 666 133 HOH HOH . C 3 HOH A 67 667 79 HOH HOH . C 3 HOH A 68 668 140 HOH HOH . C 3 HOH A 69 669 9 HOH HOH . C 3 HOH A 70 670 105 HOH HOH . C 3 HOH A 71 671 28 HOH HOH . C 3 HOH A 72 672 10 HOH HOH . C 3 HOH A 73 673 124 HOH HOH . C 3 HOH A 74 674 103 HOH HOH . C 3 HOH A 75 675 51 HOH HOH . C 3 HOH A 76 676 89 HOH HOH . C 3 HOH A 77 677 83 HOH HOH . C 3 HOH A 78 678 22 HOH HOH . C 3 HOH A 79 679 32 HOH HOH . C 3 HOH A 80 680 142 HOH HOH . C 3 HOH A 81 681 5 HOH HOH . C 3 HOH A 82 682 88 HOH HOH . C 3 HOH A 83 683 41 HOH HOH . C 3 HOH A 84 684 64 HOH HOH . C 3 HOH A 85 685 17 HOH HOH . C 3 HOH A 86 686 36 HOH HOH . C 3 HOH A 87 687 130 HOH HOH . C 3 HOH A 88 688 85 HOH HOH . C 3 HOH A 89 689 70 HOH HOH . C 3 HOH A 90 690 91 HOH HOH . C 3 HOH A 91 691 129 HOH HOH . C 3 HOH A 92 692 72 HOH HOH . C 3 HOH A 93 693 127 HOH HOH . C 3 HOH A 94 694 63 HOH HOH . C 3 HOH A 95 695 109 HOH HOH . C 3 HOH A 96 696 74 HOH HOH . C 3 HOH A 97 697 102 HOH HOH . C 3 HOH A 98 698 53 HOH HOH . C 3 HOH A 99 699 27 HOH HOH . C 3 HOH A 100 700 49 HOH HOH . C 3 HOH A 101 701 117 HOH HOH . C 3 HOH A 102 702 48 HOH HOH . C 3 HOH A 103 703 37 HOH HOH . C 3 HOH A 104 704 33 HOH HOH . C 3 HOH A 105 705 11 HOH HOH . C 3 HOH A 106 706 128 HOH HOH . C 3 HOH A 107 707 101 HOH HOH . C 3 HOH A 108 708 39 HOH HOH . C 3 HOH A 109 709 6 HOH HOH . C 3 HOH A 110 710 23 HOH HOH . C 3 HOH A 111 711 118 HOH HOH . C 3 HOH A 112 712 114 HOH HOH . C 3 HOH A 113 713 121 HOH HOH . C 3 HOH A 114 714 38 HOH HOH . C 3 HOH A 115 715 50 HOH HOH . C 3 HOH A 116 716 12 HOH HOH . C 3 HOH A 117 717 35 HOH HOH . C 3 HOH A 118 718 61 HOH HOH . C 3 HOH A 119 719 67 HOH HOH . C 3 HOH A 120 721 141 HOH HOH . C 3 HOH A 121 722 119 HOH HOH . C 3 HOH A 122 723 98 HOH HOH . C 3 HOH A 123 724 138 HOH HOH . C 3 HOH A 124 725 134 HOH HOH . C 3 HOH A 125 726 104 HOH HOH . C 3 HOH A 126 727 139 HOH HOH . C 3 HOH A 127 728 96 HOH HOH . C 3 HOH A 128 729 97 HOH HOH . C 3 HOH A 129 730 87 HOH HOH . C 3 HOH A 130 731 122 HOH HOH . C 3 HOH A 131 732 95 HOH HOH . C 3 HOH A 132 733 108 HOH HOH . C 3 HOH A 133 734 115 HOH HOH . C 3 HOH A 134 735 113 HOH HOH . C 3 HOH A 135 736 93 HOH HOH . C 3 HOH A 136 737 29 HOH HOH . C 3 HOH A 137 738 123 HOH HOH . C 3 HOH A 138 739 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 49.309 67.669 1.593 1 14.65 ? C TRS 501 A 1 HETATM 2 C C1 TRS . . . B 2 49.17 68.816 0.598 1 13.29 ? C1 TRS 501 A 1 HETATM 3 C C2 TRS . . . B 2 47.96 67.274 2.177 1 14.62 ? C2 TRS 501 A 1 HETATM 4 C C3 TRS . . . B 2 50.248 68.061 2.727 1 14.64 ? C3 TRS 501 A 1 HETATM 5 N N TRS . . . B 2 49.856 66.513 0.88 1 13.85 ? N TRS 501 A 1 HETATM 6 O O1 TRS . . . B 2 48.814 69.993 1.285 1 13.95 ? O1 TRS 501 A 1 HETATM 7 O O2 TRS . . . B 2 46.955 67.421 1.2 1 16.35 ? O2 TRS 501 A 1 HETATM 8 O O3 TRS . . . B 2 51.477 68.502 2.2 1 17.54 ? O3 TRS 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #