data_6IFB # _model_server_result.job_id naCHstdg4GyPjq4ObD1VtA _model_server_result.datetime_utc '2024-11-26 13:04:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ifb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6IFB # _exptl.entry_id 6IFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-L-rhamnopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IFB _cell.length_a 57.194 _cell.length_b 62.377 _cell.length_c 67.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id RM4 _chem_comp.mon_nstd_flag . _chem_comp.name beta-L-rhamnopyranose _chem_comp.type 'l-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-L-rhamnose;6-deoxy-beta-L-mannopyranose;L-rhamnose;rhamnose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 RM4 sing 301 n n C1 O5 RM4 sing 302 n n C1 O1 RM4 sing 303 n n C1 H1 RM4 sing 304 n n C3 C2 RM4 sing 305 n n C2 O2 RM4 sing 306 n n C2 H2 RM4 sing 307 n n O3 C3 RM4 sing 308 n n C3 C4 RM4 sing 309 n n C3 H3 RM4 sing 310 n n O4 C4 RM4 sing 311 n n C4 C5 RM4 sing 312 n n C4 H4 RM4 sing 313 n n C5 C6 RM4 sing 314 n n C5 O5 RM4 sing 315 n n C5 H5 RM4 sing 316 n n C6 H61 RM4 sing 317 n n C6 H62 RM4 sing 318 n n C6 H63 RM4 sing 319 n n O1 HO1 RM4 sing 320 n n O2 HO2 RM4 sing 321 n n O3 HO3 RM4 sing 322 n n O4 HO4 RM4 sing 323 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RM4 LRhapb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RM4 b-L-rhamnopyranose 'COMMON NAME' GMML 1 RM4 b-L-Rhap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RM4 Rha 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6IFB _atom_sites.fract_transf_matrix[1][1] 0.017484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RM4 A 1 201 201 RM4 RM4 . D 3 GOL A 1 202 301 GOL GOL . E 4 IPA A 1 203 3 IPA IPA . F 2 RM4 B 1 201 201 RM4 RM4 . G 3 GOL B 1 202 301 GOL GOL . H 4 IPA B 1 203 4 IPA IPA . I 4 IPA B 1 204 5 IPA IPA . J 5 HOH A 1 301 89 HOH HOH . J 5 HOH A 2 302 251 HOH HOH . J 5 HOH A 3 303 299 HOH HOH . J 5 HOH A 4 304 314 HOH HOH . J 5 HOH A 5 305 34 HOH HOH . J 5 HOH A 6 306 174 HOH HOH . J 5 HOH A 7 307 28 HOH HOH . J 5 HOH A 8 308 131 HOH HOH . J 5 HOH A 9 309 306 HOH HOH . J 5 HOH A 10 310 258 HOH HOH . J 5 HOH A 11 311 186 HOH HOH . J 5 HOH A 12 312 294 HOH HOH . J 5 HOH A 13 313 245 HOH HOH . J 5 HOH A 14 314 26 HOH HOH . J 5 HOH A 15 315 53 HOH HOH . J 5 HOH A 16 316 70 HOH HOH . J 5 HOH A 17 317 293 HOH HOH . J 5 HOH A 18 318 138 HOH HOH . J 5 HOH A 19 319 36 HOH HOH . J 5 HOH A 20 320 276 HOH HOH . J 5 HOH A 21 321 31 HOH HOH . J 5 HOH A 22 322 46 HOH HOH . J 5 HOH A 23 323 50 HOH HOH . J 5 HOH A 24 324 49 HOH HOH . J 5 HOH A 25 325 298 HOH HOH . J 5 HOH A 26 326 35 HOH HOH . J 5 HOH A 27 327 11 HOH HOH . J 5 HOH A 28 328 303 HOH HOH . J 5 HOH A 29 329 83 HOH HOH . J 5 HOH A 30 330 244 HOH HOH . J 5 HOH A 31 331 177 HOH HOH . J 5 HOH A 32 332 152 HOH HOH . J 5 HOH A 33 333 206 HOH HOH . J 5 HOH A 34 334 170 HOH HOH . J 5 HOH A 35 335 55 HOH HOH . J 5 HOH A 36 336 66 HOH HOH . J 5 HOH A 37 337 115 HOH HOH . J 5 HOH A 38 338 24 HOH HOH . J 5 HOH A 39 339 74 HOH HOH . J 5 HOH A 40 340 62 HOH HOH . J 5 HOH A 41 341 51 HOH HOH . J 5 HOH A 42 342 47 HOH HOH . J 5 HOH A 43 343 32 HOH HOH . J 5 HOH A 44 344 124 HOH HOH . J 5 HOH A 45 345 17 HOH HOH . J 5 HOH A 46 346 173 HOH HOH . J 5 HOH A 47 347 8 HOH HOH . J 5 HOH A 48 348 20 HOH HOH . J 5 HOH A 49 349 148 HOH HOH . J 5 HOH A 50 350 81 HOH HOH . J 5 HOH A 51 351 25 HOH HOH . J 5 HOH A 52 352 69 HOH HOH . J 5 HOH A 53 353 260 HOH HOH . J 5 HOH A 54 354 30 HOH HOH . J 5 HOH A 55 355 86 HOH HOH . J 5 HOH A 56 356 287 HOH HOH . J 5 HOH A 57 357 171 HOH HOH . J 5 HOH A 58 358 52 HOH HOH . J 5 HOH A 59 359 39 HOH HOH . J 5 HOH A 60 360 102 HOH HOH . J 5 HOH A 61 361 59 HOH HOH . J 5 HOH A 62 362 305 HOH HOH . J 5 HOH A 63 363 250 HOH HOH . J 5 HOH A 64 364 68 HOH HOH . J 5 HOH A 65 365 269 HOH HOH . J 5 HOH A 66 366 128 HOH HOH . J 5 HOH A 67 367 99 HOH HOH . J 5 HOH A 68 368 285 HOH HOH . J 5 HOH A 69 369 91 HOH HOH . J 5 HOH A 70 370 56 HOH HOH . J 5 HOH A 71 371 136 HOH HOH . J 5 HOH A 72 372 254 HOH HOH . J 5 HOH A 73 373 292 HOH HOH . J 5 HOH A 74 374 153 HOH HOH . J 5 HOH A 75 375 315 HOH HOH . J 5 HOH A 76 376 10 HOH HOH . J 5 HOH A 77 377 272 HOH HOH . J 5 HOH A 78 378 161 HOH HOH . J 5 HOH A 79 379 88 HOH HOH . J 5 HOH A 80 380 249 HOH HOH . J 5 HOH A 81 381 304 HOH HOH . J 5 HOH A 82 382 297 HOH HOH . J 5 HOH A 83 383 262 HOH HOH . J 5 HOH A 84 384 253 HOH HOH . J 5 HOH A 85 385 286 HOH HOH . J 5 HOH A 86 386 252 HOH HOH . J 5 HOH A 87 387 261 HOH HOH . J 5 HOH A 88 388 205 HOH HOH . J 5 HOH A 89 389 271 HOH HOH . J 5 HOH A 90 390 317 HOH HOH . J 5 HOH A 91 391 256 HOH HOH . J 5 HOH A 92 392 274 HOH HOH . J 5 HOH A 93 393 255 HOH HOH . J 5 HOH A 94 394 259 HOH HOH . J 5 HOH A 95 395 241 HOH HOH . J 5 HOH A 96 396 169 HOH HOH . J 5 HOH A 97 397 144 HOH HOH . K 5 HOH B 1 301 277 HOH HOH . K 5 HOH B 2 302 37 HOH HOH . K 5 HOH B 3 303 129 HOH HOH . K 5 HOH B 4 304 15 HOH HOH . K 5 HOH B 5 305 263 HOH HOH . K 5 HOH B 6 306 312 HOH HOH . K 5 HOH B 7 307 123 HOH HOH . K 5 HOH B 8 308 307 HOH HOH . K 5 HOH B 9 309 316 HOH HOH . K 5 HOH B 10 310 94 HOH HOH . K 5 HOH B 11 311 92 HOH HOH . K 5 HOH B 12 312 64 HOH HOH . K 5 HOH B 13 313 135 HOH HOH . K 5 HOH B 14 314 48 HOH HOH . K 5 HOH B 15 315 109 HOH HOH . K 5 HOH B 16 316 42 HOH HOH . K 5 HOH B 17 317 14 HOH HOH . K 5 HOH B 18 318 44 HOH HOH . K 5 HOH B 19 319 78 HOH HOH . K 5 HOH B 20 320 112 HOH HOH . K 5 HOH B 21 321 65 HOH HOH . K 5 HOH B 22 322 23 HOH HOH . K 5 HOH B 23 323 79 HOH HOH . K 5 HOH B 24 324 18 HOH HOH . K 5 HOH B 25 325 95 HOH HOH . K 5 HOH B 26 326 21 HOH HOH . K 5 HOH B 27 327 22 HOH HOH . K 5 HOH B 28 328 58 HOH HOH . K 5 HOH B 29 329 151 HOH HOH . K 5 HOH B 30 330 4 HOH HOH . K 5 HOH B 31 331 13 HOH HOH . K 5 HOH B 32 332 41 HOH HOH . K 5 HOH B 33 333 126 HOH HOH . K 5 HOH B 34 334 165 HOH HOH . K 5 HOH B 35 335 301 HOH HOH . K 5 HOH B 36 336 278 HOH HOH . K 5 HOH B 37 337 33 HOH HOH . K 5 HOH B 38 338 43 HOH HOH . K 5 HOH B 39 339 120 HOH HOH . K 5 HOH B 40 340 12 HOH HOH . K 5 HOH B 41 341 264 HOH HOH . K 5 HOH B 42 342 265 HOH HOH . K 5 HOH B 43 343 27 HOH HOH . K 5 HOH B 44 344 71 HOH HOH . K 5 HOH B 45 345 57 HOH HOH . K 5 HOH B 46 346 67 HOH HOH . K 5 HOH B 47 347 309 HOH HOH . K 5 HOH B 48 348 270 HOH HOH . K 5 HOH B 49 349 313 HOH HOH . K 5 HOH B 50 350 7 HOH HOH . K 5 HOH B 51 351 100 HOH HOH . K 5 HOH B 52 352 134 HOH HOH . K 5 HOH B 53 353 84 HOH HOH . K 5 HOH B 54 354 267 HOH HOH . K 5 HOH B 55 355 310 HOH HOH . K 5 HOH B 56 356 16 HOH HOH . K 5 HOH B 57 357 5 HOH HOH . K 5 HOH B 58 358 96 HOH HOH . K 5 HOH B 59 359 54 HOH HOH . K 5 HOH B 60 360 181 HOH HOH . K 5 HOH B 61 361 98 HOH HOH . K 5 HOH B 62 362 61 HOH HOH . K 5 HOH B 63 363 282 HOH HOH . K 5 HOH B 64 364 116 HOH HOH . K 5 HOH B 65 365 268 HOH HOH . K 5 HOH B 66 366 38 HOH HOH . K 5 HOH B 67 367 275 HOH HOH . K 5 HOH B 68 368 104 HOH HOH . K 5 HOH B 69 369 97 HOH HOH . K 5 HOH B 70 370 295 HOH HOH . K 5 HOH B 71 371 172 HOH HOH . K 5 HOH B 72 372 45 HOH HOH . K 5 HOH B 73 373 288 HOH HOH . K 5 HOH B 74 374 296 HOH HOH . K 5 HOH B 75 375 103 HOH HOH . K 5 HOH B 76 376 156 HOH HOH . K 5 HOH B 77 377 227 HOH HOH . K 5 HOH B 78 378 242 HOH HOH . K 5 HOH B 79 379 90 HOH HOH . K 5 HOH B 80 380 93 HOH HOH . K 5 HOH B 81 381 80 HOH HOH . K 5 HOH B 82 382 302 HOH HOH . K 5 HOH B 83 383 246 HOH HOH . K 5 HOH B 84 384 289 HOH HOH . K 5 HOH B 85 385 291 HOH HOH . K 5 HOH B 86 386 308 HOH HOH . K 5 HOH B 87 387 273 HOH HOH . K 5 HOH B 88 388 240 HOH HOH . K 5 HOH B 89 389 266 HOH HOH . K 5 HOH B 90 390 178 HOH HOH . K 5 HOH B 91 391 311 HOH HOH . K 5 HOH B 92 392 300 HOH HOH . K 5 HOH B 93 393 111 HOH HOH . K 5 HOH B 94 394 243 HOH HOH . K 5 HOH B 95 395 40 HOH HOH . K 5 HOH B 96 396 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RM4 . . . F 2 26.743 -12.105 25.626 1 14.7 ? C1 RM4 201 B 1 HETATM 2 C C2 RM4 . . . F 2 25.366 -11.446 25.785 1 16.14 ? C2 RM4 201 B 1 HETATM 3 C C3 RM4 . . . F 2 25.434 -10.044 25.29 1 15.2 ? C3 RM4 201 B 1 HETATM 4 C C4 RM4 . . . F 2 25.967 -9.97 23.851 1 18.06 ? C4 RM4 201 B 1 HETATM 5 C C5 RM4 . . . F 2 27.295 -10.719 23.789 1 18.07 ? C5 RM4 201 B 1 HETATM 6 C C6 RM4 . . . F 2 27.919 -10.829 22.371 1 19.7 ? C6 RM4 201 B 1 HETATM 7 O O1 RM4 . . . F 2 26.656 -13.459 25.916 1 16.02 ? O1 RM4 201 B 1 HETATM 8 O O2 RM4 . . . F 2 24.39 -12.193 25.038 1 15.6 ? O2 RM4 201 B 1 HETATM 9 O O3 RM4 . . . F 2 24.149 -9.388 25.336 1 15.73 ? O3 RM4 201 B 1 HETATM 10 O O4 RM4 . . . F 2 26.086 -8.583 23.436 1 20.04 ? O4 RM4 201 B 1 HETATM 11 O O5 RM4 . . . F 2 27.105 -12.041 24.226 1 17.29 ? O5 RM4 201 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #