data_6IG4 # _model_server_result.job_id w6e4Oj5EUtKSAYYiQzAhfw _model_server_result.datetime_utc '2025-04-03 20:31:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ig4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6IG4 # _exptl.entry_id 6IG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.148 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description tetracyanoplatinate(II) _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IG4 _cell.length_a 109.069 _cell.length_b 116.538 _cell.length_c 108.548 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 279 A ASP 285 1_555 I PT PT . A PT 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 B NE2 HIS 267 B HIS 273 1_555 L PT PT . B PT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? # _chem_comp.formula 'C4 N4 Pt -2' _chem_comp.formula_weight 299.148 _chem_comp.id 3G0 _chem_comp.mon_nstd_flag . _chem_comp.name tetracyanoplatinate(II) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[Pt(CN)4]2-' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C3 3G0 trip 1 n n C3 PT 3G0 sing 2 n n PT C2 3G0 sing 3 n n PT C4 3G0 sing 4 n n PT C1 3G0 sing 5 n n C2 N2 3G0 trip 6 n n C4 N4 3G0 trip 7 n n C1 N1 3G0 trip 8 n n # _atom_sites.entry_id 6IG4 _atom_sites.fract_transf_matrix[1][1] 0.009169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3G0 A 1 401 1 3G0 TCN . D 2 3G0 A 1 402 3 3G0 TCN . E 3 PT A 1 403 1 PT PT . F 3 PT A 1 404 2 PT PT . G 3 PT A 1 405 9 PT PT . H 3 PT A 1 406 11 PT PT . I 3 PT A 1 407 12 PT PT . J 2 3G0 B 1 401 2 3G0 TCN . K 3 PT B 1 402 4 PT PT . L 3 PT B 1 403 5 PT PT . M 4 HOH A 1 501 186 HOH HOH . M 4 HOH A 2 502 138 HOH HOH . M 4 HOH A 3 503 136 HOH HOH . M 4 HOH A 4 504 33 HOH HOH . M 4 HOH A 5 505 182 HOH HOH . M 4 HOH A 6 506 110 HOH HOH . M 4 HOH A 7 507 269 HOH HOH . M 4 HOH A 8 508 130 HOH HOH . M 4 HOH A 9 509 24 HOH HOH . M 4 HOH A 10 510 55 HOH HOH . M 4 HOH A 11 511 8 HOH HOH . M 4 HOH A 12 512 7 HOH HOH . M 4 HOH A 13 513 82 HOH HOH . M 4 HOH A 14 514 2 HOH HOH . M 4 HOH A 15 515 53 HOH HOH . M 4 HOH A 16 516 81 HOH HOH . M 4 HOH A 17 517 63 HOH HOH . M 4 HOH A 18 518 11 HOH HOH . M 4 HOH A 19 519 199 HOH HOH . M 4 HOH A 20 520 341 HOH HOH . M 4 HOH A 21 521 39 HOH HOH . M 4 HOH A 22 522 152 HOH HOH . M 4 HOH A 23 523 230 HOH HOH . M 4 HOH A 24 524 181 HOH HOH . M 4 HOH A 25 525 132 HOH HOH . M 4 HOH A 26 526 151 HOH HOH . M 4 HOH A 27 527 31 HOH HOH . M 4 HOH A 28 528 253 HOH HOH . M 4 HOH A 29 529 36 HOH HOH . M 4 HOH A 30 530 27 HOH HOH . M 4 HOH A 31 531 183 HOH HOH . M 4 HOH A 32 532 13 HOH HOH . M 4 HOH A 33 533 68 HOH HOH . M 4 HOH A 34 534 172 HOH HOH . M 4 HOH A 35 535 237 HOH HOH . M 4 HOH A 36 536 62 HOH HOH . M 4 HOH A 37 537 107 HOH HOH . M 4 HOH A 38 538 163 HOH HOH . M 4 HOH A 39 539 142 HOH HOH . M 4 HOH A 40 540 102 HOH HOH . M 4 HOH A 41 541 155 HOH HOH . M 4 HOH A 42 542 333 HOH HOH . M 4 HOH A 43 543 217 HOH HOH . M 4 HOH A 44 544 30 HOH HOH . M 4 HOH A 45 545 92 HOH HOH . M 4 HOH A 46 546 38 HOH HOH . M 4 HOH A 47 547 214 HOH HOH . M 4 HOH A 48 548 173 HOH HOH . M 4 HOH A 49 549 244 HOH HOH . M 4 HOH A 50 550 153 HOH HOH . M 4 HOH A 51 551 119 HOH HOH . M 4 HOH A 52 552 129 HOH HOH . M 4 HOH A 53 553 112 HOH HOH . M 4 HOH A 54 554 330 HOH HOH . M 4 HOH A 55 555 5 HOH HOH . M 4 HOH A 56 556 122 HOH HOH . M 4 HOH A 57 557 179 HOH HOH . M 4 HOH A 58 558 166 HOH HOH . M 4 HOH A 59 559 156 HOH HOH . M 4 HOH A 60 560 80 HOH HOH . M 4 HOH A 61 561 273 HOH HOH . M 4 HOH A 62 562 69 HOH HOH . M 4 HOH A 63 563 59 HOH HOH . M 4 HOH A 64 564 89 HOH HOH . M 4 HOH A 65 565 72 HOH HOH . M 4 HOH A 66 566 127 HOH HOH . M 4 HOH A 67 567 169 HOH HOH . M 4 HOH A 68 568 18 HOH HOH . M 4 HOH A 69 569 21 HOH HOH . M 4 HOH A 70 570 250 HOH HOH . M 4 HOH A 71 571 58 HOH HOH . M 4 HOH A 72 572 115 HOH HOH . M 4 HOH A 73 573 88 HOH HOH . M 4 HOH A 74 574 14 HOH HOH . M 4 HOH A 75 575 108 HOH HOH . M 4 HOH A 76 576 3 HOH HOH . M 4 HOH A 77 577 111 HOH HOH . M 4 HOH A 78 578 64 HOH HOH . M 4 HOH A 79 579 66 HOH HOH . M 4 HOH A 80 580 23 HOH HOH . M 4 HOH A 81 581 184 HOH HOH . M 4 HOH A 82 582 40 HOH HOH . M 4 HOH A 83 583 264 HOH HOH . M 4 HOH A 84 584 218 HOH HOH . M 4 HOH A 85 585 20 HOH HOH . M 4 HOH A 86 586 48 HOH HOH . M 4 HOH A 87 587 133 HOH HOH . M 4 HOH A 88 588 254 HOH HOH . M 4 HOH A 89 589 212 HOH HOH . M 4 HOH A 90 590 117 HOH HOH . M 4 HOH A 91 591 50 HOH HOH . M 4 HOH A 92 592 234 HOH HOH . M 4 HOH A 93 593 114 HOH HOH . M 4 HOH A 94 594 315 HOH HOH . M 4 HOH A 95 595 272 HOH HOH . M 4 HOH A 96 596 178 HOH HOH . M 4 HOH A 97 597 70 HOH HOH . M 4 HOH A 98 598 319 HOH HOH . M 4 HOH A 99 599 32 HOH HOH . M 4 HOH A 100 600 346 HOH HOH . M 4 HOH A 101 601 323 HOH HOH . M 4 HOH A 102 602 84 HOH HOH . M 4 HOH A 103 603 188 HOH HOH . M 4 HOH A 104 604 246 HOH HOH . M 4 HOH A 105 605 251 HOH HOH . M 4 HOH A 106 606 306 HOH HOH . M 4 HOH A 107 607 192 HOH HOH . M 4 HOH A 108 608 94 HOH HOH . M 4 HOH A 109 609 146 HOH HOH . M 4 HOH A 110 610 96 HOH HOH . M 4 HOH A 111 611 104 HOH HOH . M 4 HOH A 112 612 51 HOH HOH . M 4 HOH A 113 613 338 HOH HOH . M 4 HOH A 114 614 238 HOH HOH . M 4 HOH A 115 615 279 HOH HOH . M 4 HOH A 116 616 241 HOH HOH . M 4 HOH A 117 617 242 HOH HOH . M 4 HOH A 118 618 195 HOH HOH . M 4 HOH A 119 619 148 HOH HOH . M 4 HOH A 120 620 278 HOH HOH . M 4 HOH A 121 621 316 HOH HOH . M 4 HOH A 122 622 120 HOH HOH . M 4 HOH A 123 623 297 HOH HOH . M 4 HOH A 124 624 105 HOH HOH . M 4 HOH A 125 625 176 HOH HOH . M 4 HOH A 126 626 263 HOH HOH . M 4 HOH A 127 627 308 HOH HOH . M 4 HOH A 128 628 290 HOH HOH . M 4 HOH A 129 629 226 HOH HOH . M 4 HOH A 130 630 325 HOH HOH . M 4 HOH A 131 631 85 HOH HOH . M 4 HOH A 132 632 291 HOH HOH . M 4 HOH A 133 633 255 HOH HOH . M 4 HOH A 134 634 312 HOH HOH . M 4 HOH A 135 635 100 HOH HOH . M 4 HOH A 136 636 73 HOH HOH . M 4 HOH A 137 637 157 HOH HOH . M 4 HOH A 138 638 150 HOH HOH . M 4 HOH A 139 639 219 HOH HOH . M 4 HOH A 140 640 83 HOH HOH . M 4 HOH A 141 641 307 HOH HOH . M 4 HOH A 142 642 343 HOH HOH . M 4 HOH A 143 643 318 HOH HOH . M 4 HOH A 144 644 159 HOH HOH . M 4 HOH A 145 645 257 HOH HOH . M 4 HOH A 146 646 143 HOH HOH . M 4 HOH A 147 647 328 HOH HOH . M 4 HOH A 148 648 227 HOH HOH . M 4 HOH A 149 649 296 HOH HOH . M 4 HOH A 150 650 223 HOH HOH . N 4 HOH B 1 501 221 HOH HOH . N 4 HOH B 2 502 158 HOH HOH . N 4 HOH B 3 503 231 HOH HOH . N 4 HOH B 4 504 171 HOH HOH . N 4 HOH B 5 505 101 HOH HOH . N 4 HOH B 6 506 93 HOH HOH . N 4 HOH B 7 507 43 HOH HOH . N 4 HOH B 8 508 282 HOH HOH . N 4 HOH B 9 509 44 HOH HOH . N 4 HOH B 10 510 243 HOH HOH . N 4 HOH B 11 511 116 HOH HOH . N 4 HOH B 12 512 281 HOH HOH . N 4 HOH B 13 513 327 HOH HOH . N 4 HOH B 14 514 56 HOH HOH . N 4 HOH B 15 515 16 HOH HOH . N 4 HOH B 16 516 42 HOH HOH . N 4 HOH B 17 517 26 HOH HOH . N 4 HOH B 18 518 213 HOH HOH . N 4 HOH B 19 519 126 HOH HOH . N 4 HOH B 20 520 77 HOH HOH . N 4 HOH B 21 521 190 HOH HOH . N 4 HOH B 22 522 207 HOH HOH . N 4 HOH B 23 523 22 HOH HOH . N 4 HOH B 24 524 17 HOH HOH . N 4 HOH B 25 525 301 HOH HOH . N 4 HOH B 26 526 95 HOH HOH . N 4 HOH B 27 527 1 HOH HOH . N 4 HOH B 28 528 47 HOH HOH . N 4 HOH B 29 529 191 HOH HOH . N 4 HOH B 30 530 97 HOH HOH . N 4 HOH B 31 531 6 HOH HOH . N 4 HOH B 32 532 164 HOH HOH . N 4 HOH B 33 533 326 HOH HOH . N 4 HOH B 34 534 29 HOH HOH . N 4 HOH B 35 535 15 HOH HOH . N 4 HOH B 36 536 12 HOH HOH . N 4 HOH B 37 537 67 HOH HOH . N 4 HOH B 38 538 25 HOH HOH . N 4 HOH B 39 539 140 HOH HOH . N 4 HOH B 40 540 49 HOH HOH . N 4 HOH B 41 541 145 HOH HOH . N 4 HOH B 42 542 71 HOH HOH . N 4 HOH B 43 543 311 HOH HOH . N 4 HOH B 44 544 10 HOH HOH . N 4 HOH B 45 545 193 HOH HOH . N 4 HOH B 46 546 9 HOH HOH . N 4 HOH B 47 547 37 HOH HOH . N 4 HOH B 48 548 52 HOH HOH . N 4 HOH B 49 549 57 HOH HOH . N 4 HOH B 50 550 19 HOH HOH . N 4 HOH B 51 551 198 HOH HOH . N 4 HOH B 52 552 276 HOH HOH . N 4 HOH B 53 553 103 HOH HOH . N 4 HOH B 54 554 78 HOH HOH . N 4 HOH B 55 555 4 HOH HOH . N 4 HOH B 56 556 135 HOH HOH . N 4 HOH B 57 557 131 HOH HOH . N 4 HOH B 58 558 75 HOH HOH . N 4 HOH B 59 559 270 HOH HOH . N 4 HOH B 60 560 60 HOH HOH . N 4 HOH B 61 561 206 HOH HOH . N 4 HOH B 62 562 216 HOH HOH . N 4 HOH B 63 563 109 HOH HOH . N 4 HOH B 64 564 344 HOH HOH . N 4 HOH B 65 565 41 HOH HOH . N 4 HOH B 66 566 128 HOH HOH . N 4 HOH B 67 567 99 HOH HOH . N 4 HOH B 68 568 65 HOH HOH . N 4 HOH B 69 569 208 HOH HOH . N 4 HOH B 70 570 229 HOH HOH . N 4 HOH B 71 571 139 HOH HOH . N 4 HOH B 72 572 298 HOH HOH . N 4 HOH B 73 573 177 HOH HOH . N 4 HOH B 74 574 239 HOH HOH . N 4 HOH B 75 575 299 HOH HOH . N 4 HOH B 76 576 204 HOH HOH . N 4 HOH B 77 577 160 HOH HOH . N 4 HOH B 78 578 86 HOH HOH . N 4 HOH B 79 579 35 HOH HOH . N 4 HOH B 80 580 121 HOH HOH . N 4 HOH B 81 581 167 HOH HOH . N 4 HOH B 82 582 266 HOH HOH . N 4 HOH B 83 583 286 HOH HOH . N 4 HOH B 84 584 194 HOH HOH . N 4 HOH B 85 585 202 HOH HOH . N 4 HOH B 86 586 245 HOH HOH . N 4 HOH B 87 587 268 HOH HOH . N 4 HOH B 88 588 280 HOH HOH . N 4 HOH B 89 589 209 HOH HOH . N 4 HOH B 90 590 137 HOH HOH . N 4 HOH B 91 591 118 HOH HOH . N 4 HOH B 92 592 113 HOH HOH . N 4 HOH B 93 593 162 HOH HOH . N 4 HOH B 94 594 168 HOH HOH . N 4 HOH B 95 595 304 HOH HOH . N 4 HOH B 96 596 314 HOH HOH . N 4 HOH B 97 597 79 HOH HOH . N 4 HOH B 98 598 284 HOH HOH . N 4 HOH B 99 599 303 HOH HOH . N 4 HOH B 100 600 211 HOH HOH . N 4 HOH B 101 601 61 HOH HOH . N 4 HOH B 102 602 285 HOH HOH . N 4 HOH B 103 603 141 HOH HOH . N 4 HOH B 104 604 220 HOH HOH . N 4 HOH B 105 605 106 HOH HOH . N 4 HOH B 106 606 339 HOH HOH . N 4 HOH B 107 607 98 HOH HOH . N 4 HOH B 108 608 134 HOH HOH . N 4 HOH B 109 609 34 HOH HOH . N 4 HOH B 110 610 317 HOH HOH . N 4 HOH B 111 611 265 HOH HOH . N 4 HOH B 112 612 125 HOH HOH . N 4 HOH B 113 613 149 HOH HOH . N 4 HOH B 114 614 249 HOH HOH . N 4 HOH B 115 615 235 HOH HOH . N 4 HOH B 116 616 313 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3G0 . . . C 2 38.91 19.399 40.525 1 54.44 ? C1 3G0 401 A 1 HETATM 2 N N1 3G0 . . . C 2 38.63 20.588 40.47 1 28.05 ? N1 3G0 401 A 1 HETATM 3 C C2 3G0 . . . C 2 38.119 16.839 39.313 1 13.39 ? C2 3G0 401 A 1 HETATM 4 PT PT 3G0 . . . C 2 39.494 17.49 40.527 1 49.97 ? PT 3G0 401 A 1 HETATM 5 N N2 3G0 . . . C 2 37.253 16.323 38.657 1 36.02 ? N2 3G0 401 A 1 HETATM 6 C C3 3G0 . . . C 2 40.324 15.749 40.178 1 39.69 ? C3 3G0 401 A 1 HETATM 7 N N3 3G0 . . . C 2 40.847 14.733 39.872 1 25.45 ? N3 3G0 401 A 1 HETATM 8 C C4 3G0 . . . C 2 40.907 18.086 41.784 1 34.61 ? C4 3G0 401 A 1 HETATM 9 N N4 3G0 . . . C 2 41.79 18.496 42.547 1 37.09 ? N4 3G0 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #