data_6IGK # _model_server_result.job_id RxuY7bD8KfAs8X-cY9SgWA _model_server_result.datetime_utc '2024-12-21 14:34:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6igk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1212}' # _entry.id 6IGK # _exptl.entry_id 6IGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IGK _cell.length_a 65.55 _cell.length_b 172.28 _cell.length_c 121.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 90 1_555 A SG CYS 449 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 112 A CYS 174 1_555 A SG CYS 193 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 1 B CYS 1 1_555 B SG CYS 15 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 11 B CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 257 n n C10 C9 OLC doub 258 n n C10 C11 OLC sing 259 n n C9 C8 OLC sing 260 n n C17 C16 OLC sing 261 z n C11 C12 OLC sing 262 n n C8 C7 OLC sing 263 n n C24 C22 OLC sing 264 n n C24 O25 OLC sing 265 n n C16 C15 OLC sing 266 n n C12 C13 OLC sing 267 n n C7 C6 OLC sing 268 n n C15 C14 OLC sing 269 n n C13 C14 OLC sing 270 n n C6 C5 OLC sing 271 n n C5 C4 OLC sing 272 n n C4 C3 OLC sing 273 n n C3 C2 OLC sing 274 n n C2 C1 OLC sing 275 n n C21 C22 OLC sing 276 n n C21 O20 OLC sing 277 n n C1 O19 OLC doub 278 n n C1 O20 OLC sing 279 n n C22 O23 OLC sing 280 n n C18 H18 OLC sing 281 n n C18 H18A OLC sing 282 n n C18 H18B OLC sing 283 n n C10 H10 OLC sing 284 n n C9 H9 OLC sing 285 n n C17 H17 OLC sing 286 n n C17 H17A OLC sing 287 n n C11 H11 OLC sing 288 n n C11 H11A OLC sing 289 n n C8 H8 OLC sing 290 n n C8 H8A OLC sing 291 n n C24 H24 OLC sing 292 n n C24 H24A OLC sing 293 n n C16 H16 OLC sing 294 n n C16 H16A OLC sing 295 n n C12 H12 OLC sing 296 n n C12 H12A OLC sing 297 n n C7 H7 OLC sing 298 n n C7 H7A OLC sing 299 n n C15 H15 OLC sing 300 n n C15 H15A OLC sing 301 n n C13 H13 OLC sing 302 n n C13 H13A OLC sing 303 n n C6 H6 OLC sing 304 n n C6 H6A OLC sing 305 n n C14 H14 OLC sing 306 n n C14 H14A OLC sing 307 n n C5 H5 OLC sing 308 n n C5 H5A OLC sing 309 n n C4 H4 OLC sing 310 n n C4 H4A OLC sing 311 n n C3 H3 OLC sing 312 n n C3 H3A OLC sing 313 n n C2 H2 OLC sing 314 n n C2 H2A OLC sing 315 n n C21 H21 OLC sing 316 n n C21 H21A OLC sing 317 n n C22 H22 OLC sing 318 n n O25 HO25 OLC sing 319 n n O23 HO23 OLC sing 320 n n # _atom_sites.entry_id 6IGK _atom_sites.fract_transf_matrix[1][1] 0.015256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OLC A 1 1201 2 OLC OLC . D 3 OLC A 1 1202 3 OLC OLC . E 3 OLC A 1 1203 4 OLC OLC . F 3 OLC A 1 1204 5 OLC OLC . G 3 OLC A 1 1205 6 OLC OLC . H 3 OLC A 1 1206 7 OLC OLC . I 3 OLC A 1 1207 10 OLC OLC . J 3 OLC A 1 1208 11 OLC OLC . K 3 OLC A 1 1209 13 OLC OLC . L 3 OLC A 1 1210 14 OLC OLC . M 3 OLC A 1 1211 15 OLC OLC . N 3 OLC A 1 1212 16 OLC OLC . O 4 CIT A 1 1213 1201 CIT CIT . P 5 HOH A 1 1301 25 HOH HOH . P 5 HOH A 2 1302 153 HOH HOH . P 5 HOH A 3 1303 243 HOH HOH . P 5 HOH A 4 1304 148 HOH HOH . P 5 HOH A 5 1305 126 HOH HOH . P 5 HOH A 6 1306 135 HOH HOH . P 5 HOH A 7 1307 134 HOH HOH . P 5 HOH A 8 1308 157 HOH HOH . P 5 HOH A 9 1309 132 HOH HOH . P 5 HOH A 10 1310 67 HOH HOH . P 5 HOH A 11 1311 224 HOH HOH . P 5 HOH A 12 1312 11 HOH HOH . P 5 HOH A 13 1313 79 HOH HOH . P 5 HOH A 14 1314 26 HOH HOH . P 5 HOH A 15 1315 23 HOH HOH . P 5 HOH A 16 1316 63 HOH HOH . P 5 HOH A 17 1317 7 HOH HOH . P 5 HOH A 18 1318 105 HOH HOH . P 5 HOH A 19 1319 197 HOH HOH . P 5 HOH A 20 1320 14 HOH HOH . P 5 HOH A 21 1321 193 HOH HOH . P 5 HOH A 22 1322 24 HOH HOH . P 5 HOH A 23 1323 62 HOH HOH . P 5 HOH A 24 1324 91 HOH HOH . P 5 HOH A 25 1325 212 HOH HOH . P 5 HOH A 26 1326 35 HOH HOH . P 5 HOH A 27 1327 17 HOH HOH . P 5 HOH A 28 1328 100 HOH HOH . P 5 HOH A 29 1329 263 HOH HOH . P 5 HOH A 30 1330 167 HOH HOH . P 5 HOH A 31 1331 6 HOH HOH . P 5 HOH A 32 1332 86 HOH HOH . P 5 HOH A 33 1333 144 HOH HOH . P 5 HOH A 34 1334 177 HOH HOH . P 5 HOH A 35 1335 150 HOH HOH . P 5 HOH A 36 1336 10 HOH HOH . P 5 HOH A 37 1337 9 HOH HOH . P 5 HOH A 38 1338 19 HOH HOH . P 5 HOH A 39 1339 92 HOH HOH . P 5 HOH A 40 1340 4 HOH HOH . P 5 HOH A 41 1341 13 HOH HOH . P 5 HOH A 42 1342 180 HOH HOH . P 5 HOH A 43 1343 80 HOH HOH . P 5 HOH A 44 1344 93 HOH HOH . P 5 HOH A 45 1345 1 HOH HOH . P 5 HOH A 46 1346 115 HOH HOH . P 5 HOH A 47 1347 254 HOH HOH . P 5 HOH A 48 1348 143 HOH HOH . P 5 HOH A 49 1349 5 HOH HOH . P 5 HOH A 50 1350 33 HOH HOH . P 5 HOH A 51 1351 260 HOH HOH . P 5 HOH A 52 1352 168 HOH HOH . P 5 HOH A 53 1353 222 HOH HOH . P 5 HOH A 54 1354 83 HOH HOH . P 5 HOH A 55 1355 171 HOH HOH . P 5 HOH A 56 1356 208 HOH HOH . P 5 HOH A 57 1357 71 HOH HOH . P 5 HOH A 58 1358 241 HOH HOH . P 5 HOH A 59 1359 28 HOH HOH . P 5 HOH A 60 1360 3 HOH HOH . P 5 HOH A 61 1361 31 HOH HOH . P 5 HOH A 62 1362 129 HOH HOH . P 5 HOH A 63 1363 133 HOH HOH . P 5 HOH A 64 1364 76 HOH HOH . P 5 HOH A 65 1365 219 HOH HOH . P 5 HOH A 66 1366 211 HOH HOH . P 5 HOH A 67 1367 34 HOH HOH . P 5 HOH A 68 1368 140 HOH HOH . P 5 HOH A 69 1369 142 HOH HOH . P 5 HOH A 70 1370 147 HOH HOH . P 5 HOH A 71 1371 216 HOH HOH . P 5 HOH A 72 1372 84 HOH HOH . P 5 HOH A 73 1373 22 HOH HOH . P 5 HOH A 74 1374 15 HOH HOH . P 5 HOH A 75 1375 125 HOH HOH . P 5 HOH A 76 1376 36 HOH HOH . P 5 HOH A 77 1377 233 HOH HOH . P 5 HOH A 78 1378 75 HOH HOH . P 5 HOH A 79 1379 141 HOH HOH . P 5 HOH A 80 1380 232 HOH HOH . P 5 HOH A 81 1381 81 HOH HOH . P 5 HOH A 82 1382 116 HOH HOH . P 5 HOH A 83 1383 155 HOH HOH . P 5 HOH A 84 1384 69 HOH HOH . P 5 HOH A 85 1385 30 HOH HOH . P 5 HOH A 86 1386 61 HOH HOH . P 5 HOH A 87 1387 20 HOH HOH . P 5 HOH A 88 1388 214 HOH HOH . P 5 HOH A 89 1389 220 HOH HOH . P 5 HOH A 90 1390 160 HOH HOH . P 5 HOH A 91 1391 114 HOH HOH . P 5 HOH A 92 1392 206 HOH HOH . P 5 HOH A 93 1393 12 HOH HOH . P 5 HOH A 94 1394 101 HOH HOH . P 5 HOH A 95 1395 110 HOH HOH . P 5 HOH A 96 1396 120 HOH HOH . P 5 HOH A 97 1397 45 HOH HOH . P 5 HOH A 98 1398 228 HOH HOH . P 5 HOH A 99 1399 46 HOH HOH . P 5 HOH A 100 1400 264 HOH HOH . P 5 HOH A 101 1401 227 HOH HOH . P 5 HOH A 102 1402 104 HOH HOH . P 5 HOH A 103 1403 253 HOH HOH . P 5 HOH A 104 1404 248 HOH HOH . P 5 HOH A 105 1405 124 HOH HOH . P 5 HOH A 106 1406 8 HOH HOH . P 5 HOH A 107 1407 201 HOH HOH . P 5 HOH A 108 1408 240 HOH HOH . P 5 HOH A 109 1409 251 HOH HOH . P 5 HOH A 110 1410 96 HOH HOH . P 5 HOH A 111 1411 156 HOH HOH . P 5 HOH A 112 1412 65 HOH HOH . P 5 HOH A 113 1413 265 HOH HOH . P 5 HOH A 114 1414 159 HOH HOH . P 5 HOH A 115 1415 267 HOH HOH . P 5 HOH A 116 1416 103 HOH HOH . P 5 HOH A 117 1417 123 HOH HOH . P 5 HOH A 118 1418 252 HOH HOH . P 5 HOH A 119 1419 131 HOH HOH . P 5 HOH A 120 1420 77 HOH HOH . P 5 HOH A 121 1421 245 HOH HOH . P 5 HOH A 122 1422 190 HOH HOH . P 5 HOH A 123 1423 72 HOH HOH . P 5 HOH A 124 1424 236 HOH HOH . P 5 HOH A 125 1425 32 HOH HOH . P 5 HOH A 126 1426 185 HOH HOH . P 5 HOH A 127 1427 95 HOH HOH . P 5 HOH A 128 1428 255 HOH HOH . P 5 HOH A 129 1429 151 HOH HOH . P 5 HOH A 130 1430 146 HOH HOH . P 5 HOH A 131 1431 179 HOH HOH . P 5 HOH A 132 1432 78 HOH HOH . P 5 HOH A 133 1433 215 HOH HOH . P 5 HOH A 134 1434 161 HOH HOH . P 5 HOH A 135 1435 136 HOH HOH . P 5 HOH A 136 1436 223 HOH HOH . P 5 HOH A 137 1437 98 HOH HOH . P 5 HOH A 138 1438 145 HOH HOH . P 5 HOH A 139 1439 186 HOH HOH . P 5 HOH A 140 1440 258 HOH HOH . P 5 HOH A 141 1441 70 HOH HOH . P 5 HOH A 142 1442 249 HOH HOH . P 5 HOH A 143 1443 244 HOH HOH . P 5 HOH A 144 1444 182 HOH HOH . P 5 HOH A 145 1445 184 HOH HOH . P 5 HOH A 146 1446 235 HOH HOH . P 5 HOH A 147 1447 172 HOH HOH . P 5 HOH A 148 1448 183 HOH HOH . P 5 HOH A 149 1449 117 HOH HOH . P 5 HOH A 150 1450 178 HOH HOH . P 5 HOH A 151 1451 97 HOH HOH . P 5 HOH A 152 1452 102 HOH HOH . P 5 HOH A 153 1453 246 HOH HOH . P 5 HOH A 154 1454 176 HOH HOH . P 5 HOH A 155 1455 181 HOH HOH . P 5 HOH A 156 1456 174 HOH HOH . P 5 HOH A 157 1457 250 HOH HOH . P 5 HOH A 158 1458 170 HOH HOH . P 5 HOH A 159 1459 106 HOH HOH . P 5 HOH A 160 1460 164 HOH HOH . P 5 HOH A 161 1461 221 HOH HOH . P 5 HOH A 162 1462 175 HOH HOH . P 5 HOH A 163 1463 237 HOH HOH . P 5 HOH A 164 1464 198 HOH HOH . P 5 HOH A 165 1465 199 HOH HOH . P 5 HOH A 166 1466 259 HOH HOH . Q 5 HOH B 1 101 2 HOH HOH . Q 5 HOH B 2 102 226 HOH HOH . Q 5 HOH B 3 103 231 HOH HOH . Q 5 HOH B 4 104 139 HOH HOH . Q 5 HOH B 5 105 230 HOH HOH . Q 5 HOH B 6 106 21 HOH HOH . Q 5 HOH B 7 107 16 HOH HOH . Q 5 HOH B 8 108 225 HOH HOH . Q 5 HOH B 9 109 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . N 3 2.537 39.217 122.501 1 74.39 ? C10 OLC 1212 A 1 HETATM 2 C C9 OLC . . . N 3 2.576 37.896 122.361 1 74.81 ? C9 OLC 1212 A 1 HETATM 3 C C11 OLC . . . N 3 1.494 40.024 121.768 1 73.99 ? C11 OLC 1212 A 1 HETATM 4 C C8 OLC . . . N 3 1.592 37.17 121.471 1 73.65 ? C8 OLC 1212 A 1 HETATM 5 C C24 OLC . . . N 3 6.473 25.469 119.642 1 95.38 ? C24 OLC 1212 A 1 HETATM 6 C C12 OLC . . . N 3 0.832 40.986 122.745 1 72.14 ? C12 OLC 1212 A 1 HETATM 7 C C7 OLC . . . N 3 2.256 35.952 120.826 1 70.93 ? C7 OLC 1212 A 1 HETATM 8 C C6 OLC . . . N 3 2.497 34.83 121.834 1 66.81 ? C6 OLC 1212 A 1 HETATM 9 C C5 OLC . . . N 3 3.399 33.738 121.265 1 61.64 ? C5 OLC 1212 A 1 HETATM 10 C C4 OLC . . . N 3 2.596 32.588 120.66 1 65.17 ? C4 OLC 1212 A 1 HETATM 11 C C3 OLC . . . N 3 3.505 31.503 120.085 1 74.18 ? C3 OLC 1212 A 1 HETATM 12 C C2 OLC . . . N 3 2.713 30.256 119.698 1 81.15 ? C2 OLC 1212 A 1 HETATM 13 C C21 OLC . . . N 3 4.319 26.778 119.531 1 96.13 ? C21 OLC 1212 A 1 HETATM 14 C C1 OLC . . . N 3 3.621 29.159 119.181 1 90.68 ? C1 OLC 1212 A 1 HETATM 15 C C22 OLC . . . N 3 5.759 26.671 119.034 1 99.62 ? C22 OLC 1212 A 1 HETATM 16 O O19 OLC . . . N 3 3.96 29.141 118.008 1 94.79 ? O19 OLC 1212 A 1 HETATM 17 O O25 OLC . . . N 3 7.852 25.503 119.247 1 91.02 ? O25 OLC 1212 A 1 HETATM 18 O O23 OLC . . . N 3 5.748 26.528 117.608 1 106.19 ? O23 OLC 1212 A 1 HETATM 19 O O20 OLC . . . N 3 4.089 28.089 120.053 1 93.62 ? O20 OLC 1212 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #