data_6IGL # _model_server_result.job_id zIzuDrOYkixQ0aMGPR8MOg _model_server_result.datetime_utc '2024-12-27 00:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6igl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1206}' # _entry.id 6IGL # _exptl.entry_id 6IGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IGL _cell.length_a 99.98 _cell.length_b 303.86 _cell.length_c 60.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 90 1_555 A SG CYS 449 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 112 A CYS 174 1_555 A SG CYS 193 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B C4 SIN 1 B SIN 7 1_555 B N ASP 2 B ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 257 n n C10 C9 OLC doub 258 n n C10 C11 OLC sing 259 n n C9 C8 OLC sing 260 n n C17 C16 OLC sing 261 z n C11 C12 OLC sing 262 n n C8 C7 OLC sing 263 n n C24 C22 OLC sing 264 n n C24 O25 OLC sing 265 n n C16 C15 OLC sing 266 n n C12 C13 OLC sing 267 n n C7 C6 OLC sing 268 n n C15 C14 OLC sing 269 n n C13 C14 OLC sing 270 n n C6 C5 OLC sing 271 n n C5 C4 OLC sing 272 n n C4 C3 OLC sing 273 n n C3 C2 OLC sing 274 n n C2 C1 OLC sing 275 n n C21 C22 OLC sing 276 n n C21 O20 OLC sing 277 n n C1 O19 OLC doub 278 n n C1 O20 OLC sing 279 n n C22 O23 OLC sing 280 n n C18 H18 OLC sing 281 n n C18 H18A OLC sing 282 n n C18 H18B OLC sing 283 n n C10 H10 OLC sing 284 n n C9 H9 OLC sing 285 n n C17 H17 OLC sing 286 n n C17 H17A OLC sing 287 n n C11 H11 OLC sing 288 n n C11 H11A OLC sing 289 n n C8 H8 OLC sing 290 n n C8 H8A OLC sing 291 n n C24 H24 OLC sing 292 n n C24 H24A OLC sing 293 n n C16 H16 OLC sing 294 n n C16 H16A OLC sing 295 n n C12 H12 OLC sing 296 n n C12 H12A OLC sing 297 n n C7 H7 OLC sing 298 n n C7 H7A OLC sing 299 n n C15 H15 OLC sing 300 n n C15 H15A OLC sing 301 n n C13 H13 OLC sing 302 n n C13 H13A OLC sing 303 n n C6 H6 OLC sing 304 n n C6 H6A OLC sing 305 n n C14 H14 OLC sing 306 n n C14 H14A OLC sing 307 n n C5 H5 OLC sing 308 n n C5 H5A OLC sing 309 n n C4 H4 OLC sing 310 n n C4 H4A OLC sing 311 n n C3 H3 OLC sing 312 n n C3 H3A OLC sing 313 n n C2 H2 OLC sing 314 n n C2 H2A OLC sing 315 n n C21 H21 OLC sing 316 n n C21 H21A OLC sing 317 n n C22 H22 OLC sing 318 n n O25 HO25 OLC sing 319 n n O23 HO23 OLC sing 320 n n # _atom_sites.entry_id 6IGL _atom_sites.fract_transf_matrix[1][1] 0.010002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CIT A 1 1201 1201 CIT CIT . D 4 SO4 A 1 1202 1301 SO4 SO4 . E 4 SO4 A 1 1203 1401 SO4 SO4 . F 4 SO4 A 1 1204 1501 SO4 SO4 . G 4 SO4 A 1 1205 1701 SO4 SO4 . H 5 OLC A 1 1206 1 OLC OLC . I 5 OLC A 1 1207 2 OLC OLC . J 5 OLC A 1 1208 3 OLC OLC . K 6 HOH A 1 1301 53 HOH HOH . K 6 HOH A 2 1302 7 HOH HOH . K 6 HOH A 3 1303 5 HOH HOH . K 6 HOH A 4 1304 6 HOH HOH . K 6 HOH A 5 1305 37 HOH HOH . K 6 HOH A 6 1306 17 HOH HOH . K 6 HOH A 7 1307 54 HOH HOH . K 6 HOH A 8 1308 16 HOH HOH . K 6 HOH A 9 1309 27 HOH HOH . K 6 HOH A 10 1310 26 HOH HOH . K 6 HOH A 11 1311 9 HOH HOH . K 6 HOH A 12 1312 65 HOH HOH . K 6 HOH A 13 1313 33 HOH HOH . K 6 HOH A 14 1314 10 HOH HOH . K 6 HOH A 15 1315 12 HOH HOH . K 6 HOH A 16 1316 32 HOH HOH . K 6 HOH A 17 1317 24 HOH HOH . K 6 HOH A 18 1318 11 HOH HOH . K 6 HOH A 19 1319 55 HOH HOH . K 6 HOH A 20 1320 1 HOH HOH . K 6 HOH A 21 1321 19 HOH HOH . K 6 HOH A 22 1322 29 HOH HOH . K 6 HOH A 23 1323 49 HOH HOH . K 6 HOH A 24 1324 63 HOH HOH . K 6 HOH A 25 1325 28 HOH HOH . K 6 HOH A 26 1326 38 HOH HOH . K 6 HOH A 27 1327 22 HOH HOH . K 6 HOH A 28 1328 39 HOH HOH . K 6 HOH A 29 1329 64 HOH HOH . K 6 HOH A 30 1330 18 HOH HOH . K 6 HOH A 31 1331 50 HOH HOH . K 6 HOH A 32 1332 51 HOH HOH . K 6 HOH A 33 1333 52 HOH HOH . K 6 HOH A 34 1334 42 HOH HOH . K 6 HOH A 35 1335 4 HOH HOH . K 6 HOH A 36 1336 60 HOH HOH . K 6 HOH A 37 1337 62 HOH HOH . K 6 HOH A 38 1338 23 HOH HOH . K 6 HOH A 39 1339 2 HOH HOH . K 6 HOH A 40 1340 58 HOH HOH . K 6 HOH A 41 1341 57 HOH HOH . K 6 HOH A 42 1342 30 HOH HOH . K 6 HOH A 43 1343 41 HOH HOH . K 6 HOH A 44 1344 25 HOH HOH . K 6 HOH A 45 1345 45 HOH HOH . K 6 HOH A 46 1346 56 HOH HOH . K 6 HOH A 47 1347 59 HOH HOH . K 6 HOH A 48 1348 46 HOH HOH . K 6 HOH A 49 1349 66 HOH HOH . K 6 HOH A 50 1350 35 HOH HOH . K 6 HOH A 51 1351 36 HOH HOH . K 6 HOH A 52 1352 61 HOH HOH . K 6 HOH A 53 1353 20 HOH HOH . K 6 HOH A 54 1354 67 HOH HOH . K 6 HOH A 55 1355 48 HOH HOH . K 6 HOH A 56 1356 47 HOH HOH . K 6 HOH A 57 1357 68 HOH HOH . K 6 HOH A 58 1358 44 HOH HOH . K 6 HOH A 59 1359 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 5 17.114 43.09 -24.851 1 50.02 ? C18 OLC 1206 A 1 HETATM 2 C C10 OLC . . . H 5 9.658 43.138 -21.565 1 70.93 ? C10 OLC 1206 A 1 HETATM 3 C C9 OLC . . . H 5 8.447 43.013 -21.03 1 71.38 ? C9 OLC 1206 A 1 HETATM 4 C C17 OLC . . . H 5 15.929 42.253 -24.423 1 79.7 ? C17 OLC 1206 A 1 HETATM 5 C C11 OLC . . . H 5 10.463 41.906 -21.908 1 78.45 ? C11 OLC 1206 A 1 HETATM 6 C C8 OLC . . . H 5 7.885 41.639 -20.755 1 87.07 ? C8 OLC 1206 A 1 HETATM 7 C C24 OLC . . . H 5 5.657 49.863 -18.464 1 76.88 ? C24 OLC 1206 A 1 HETATM 8 C C16 OLC . . . H 5 14.659 42.691 -25.145 1 81.5 ? C16 OLC 1206 A 1 HETATM 9 C C12 OLC . . . H 5 11.944 42.259 -21.886 1 60.17 ? C12 OLC 1206 A 1 HETATM 10 C C7 OLC . . . H 5 7.926 41.375 -19.254 1 74.06 ? C7 OLC 1206 A 1 HETATM 11 C C15 OLC . . . H 5 13.455 42.628 -24.214 1 82.59 ? C15 OLC 1206 A 1 HETATM 12 C C13 OLC . . . H 5 12.805 41.089 -22.344 1 64.04 ? C13 OLC 1206 A 1 HETATM 13 C C6 OLC . . . H 5 7.031 42.351 -18.502 1 67.06 ? C6 OLC 1206 A 1 HETATM 14 C C14 OLC . . . H 5 13.104 41.193 -23.835 1 85.65 ? C14 OLC 1206 A 1 HETATM 15 C C5 OLC . . . H 5 7.305 42.301 -17.003 1 82.47 ? C5 OLC 1206 A 1 HETATM 16 C C4 OLC . . . H 5 6.288 43.128 -16.226 1 83.15 ? C4 OLC 1206 A 1 HETATM 17 C C3 OLC . . . H 5 6.038 44.469 -16.905 1 65.89 ? C3 OLC 1206 A 1 HETATM 18 C C2 OLC . . . H 5 5.458 45.484 -15.928 1 80.52 ? C2 OLC 1206 A 1 HETATM 19 C C21 OLC . . . H 5 4.505 49.146 -16.394 1 83.58 ? C21 OLC 1206 A 1 HETATM 20 C C1 OLC . . . H 5 5.108 46.746 -16.68 1 97.74 ? C1 OLC 1206 A 1 HETATM 21 C C22 OLC . . . H 5 5.315 50.265 -17.034 1 87.07 ? C22 OLC 1206 A 1 HETATM 22 O O19 OLC . . . H 5 4.608 46.689 -17.792 1 104.02 ? O19 OLC 1206 A 1 HETATM 23 O O25 OLC . . . H 5 6.164 50.996 -19.176 1 76.37 ? O25 OLC 1206 A 1 HETATM 24 O O23 OLC . . . H 5 4.547 51.473 -17.044 1 89.32 ? O23 OLC 1206 A 1 HETATM 25 O O20 OLC . . . H 5 5.365 48.05 -16.09 1 90.37 ? O20 OLC 1206 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #