data_6II7 # _model_server_result.job_id 6UIM0IYEkxsEDTx7Wchf-w _model_server_result.datetime_utc '2025-01-07 21:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ii7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6II7 # _exptl.entry_id 6II7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6II7 _cell.length_a 48.605 _cell.length_b 62.553 _cell.length_c 126.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6II7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 46 A HIS 46 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 A NE2 HIS 48 A HIS 48 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A OD2 ASP 146 A ASP 146 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 A NE2 HIS 230 A HIS 230 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 A OD1 ASP 295 A ASP 295 1_555 E ZN ZN . A ZN 404 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc6 A OD1 ASP 314 A ASP 314 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc7 A ND1 HIS 333 A HIS 333 1_555 E ZN ZN . A ZN 404 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc8 C N9 HPA . A HPA 402 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc9 E ZN ZN . A ZN 404 1_555 F O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C10 H12 N4 O5' _chem_comp.formula_weight 268.226 _chem_comp.id NOS _chem_comp.mon_nstd_flag . _chem_comp.name INOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NOS sing 252 n n N1 C6 NOS sing 253 n n C2 N3 NOS doub 254 n n O6 C6 NOS doub 255 n n C6 C5 NOS sing 256 n n N3 C4 NOS sing 257 n n O2' C2' NOS sing 258 n n C5 C4 NOS doub 259 n y C5 N7 NOS sing 260 n y C4 N9 NOS sing 261 n y N7 C8 NOS doub 262 n y N9 C8 NOS sing 263 n y N9 C1' NOS sing 264 n n C1' C2' NOS sing 265 n n C1' O4' NOS sing 266 n n C2' C3' NOS sing 267 n n O4' C4' NOS sing 268 n n C3' O3' NOS sing 269 n n C3' C4' NOS sing 270 n n C4' C5' NOS sing 271 n n C5' O5' NOS sing 272 n n C2 H1 NOS sing 273 n n N1 H2 NOS sing 274 n n C8 H3 NOS sing 275 n n C5' H4 NOS sing 276 n n C5' H5 NOS sing 277 n n O5' H6 NOS sing 278 n n C4' H7 NOS sing 279 n n C1' H8 NOS sing 280 n n C2' H9 NOS sing 281 n n O2' H10 NOS sing 282 n n C3' H11 NOS sing 283 n n O3' H12 NOS sing 284 n n # _atom_sites.entry_id 6II7 _atom_sites.fract_transf_matrix[1][1] 0.020574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOS A 1 401 1 NOS NOS . C 3 HPA A 1 402 2 HPA HPA . D 4 ZN A 1 403 3 ZN ZN . E 4 ZN A 1 404 4 ZN ZN . F 5 HOH A 1 501 125 HOH HOH . F 5 HOH A 2 502 118 HOH HOH . F 5 HOH A 3 503 93 HOH HOH . F 5 HOH A 4 504 36 HOH HOH . F 5 HOH A 5 505 121 HOH HOH . F 5 HOH A 6 506 27 HOH HOH . F 5 HOH A 7 507 70 HOH HOH . F 5 HOH A 8 508 124 HOH HOH . F 5 HOH A 9 509 58 HOH HOH . F 5 HOH A 10 510 9 HOH HOH . F 5 HOH A 11 511 72 HOH HOH . F 5 HOH A 12 512 98 HOH HOH . F 5 HOH A 13 513 65 HOH HOH . F 5 HOH A 14 514 55 HOH HOH . F 5 HOH A 15 515 40 HOH HOH . F 5 HOH A 16 516 112 HOH HOH . F 5 HOH A 17 517 109 HOH HOH . F 5 HOH A 18 518 37 HOH HOH . F 5 HOH A 19 519 39 HOH HOH . F 5 HOH A 20 520 81 HOH HOH . F 5 HOH A 21 521 111 HOH HOH . F 5 HOH A 22 522 78 HOH HOH . F 5 HOH A 23 523 122 HOH HOH . F 5 HOH A 24 524 34 HOH HOH . F 5 HOH A 25 525 15 HOH HOH . F 5 HOH A 26 526 60 HOH HOH . F 5 HOH A 27 527 82 HOH HOH . F 5 HOH A 28 528 26 HOH HOH . F 5 HOH A 29 529 69 HOH HOH . F 5 HOH A 30 530 45 HOH HOH . F 5 HOH A 31 531 51 HOH HOH . F 5 HOH A 32 532 113 HOH HOH . F 5 HOH A 33 533 91 HOH HOH . F 5 HOH A 34 534 33 HOH HOH . F 5 HOH A 35 535 43 HOH HOH . F 5 HOH A 36 536 13 HOH HOH . F 5 HOH A 37 537 3 HOH HOH . F 5 HOH A 38 538 83 HOH HOH . F 5 HOH A 39 539 44 HOH HOH . F 5 HOH A 40 540 41 HOH HOH . F 5 HOH A 41 541 35 HOH HOH . F 5 HOH A 42 542 115 HOH HOH . F 5 HOH A 43 543 56 HOH HOH . F 5 HOH A 44 544 127 HOH HOH . F 5 HOH A 45 545 7 HOH HOH . F 5 HOH A 46 546 4 HOH HOH . F 5 HOH A 47 547 126 HOH HOH . F 5 HOH A 48 548 5 HOH HOH . F 5 HOH A 49 549 86 HOH HOH . F 5 HOH A 50 550 17 HOH HOH . F 5 HOH A 51 551 95 HOH HOH . F 5 HOH A 52 552 116 HOH HOH . F 5 HOH A 53 553 48 HOH HOH . F 5 HOH A 54 554 8 HOH HOH . F 5 HOH A 55 555 92 HOH HOH . F 5 HOH A 56 556 62 HOH HOH . F 5 HOH A 57 557 103 HOH HOH . F 5 HOH A 58 558 119 HOH HOH . F 5 HOH A 59 559 120 HOH HOH . F 5 HOH A 60 560 128 HOH HOH . F 5 HOH A 61 561 24 HOH HOH . F 5 HOH A 62 562 85 HOH HOH . F 5 HOH A 63 563 68 HOH HOH . F 5 HOH A 64 564 28 HOH HOH . F 5 HOH A 65 565 90 HOH HOH . F 5 HOH A 66 566 80 HOH HOH . F 5 HOH A 67 567 97 HOH HOH . F 5 HOH A 68 568 64 HOH HOH . F 5 HOH A 69 569 59 HOH HOH . F 5 HOH A 70 570 29 HOH HOH . F 5 HOH A 71 571 123 HOH HOH . F 5 HOH A 72 572 49 HOH HOH . F 5 HOH A 73 573 42 HOH HOH . F 5 HOH A 74 574 1 HOH HOH . F 5 HOH A 75 575 114 HOH HOH . F 5 HOH A 76 576 54 HOH HOH . F 5 HOH A 77 577 31 HOH HOH . F 5 HOH A 78 578 47 HOH HOH . F 5 HOH A 79 579 77 HOH HOH . F 5 HOH A 80 580 71 HOH HOH . F 5 HOH A 81 581 74 HOH HOH . F 5 HOH A 82 582 18 HOH HOH . F 5 HOH A 83 583 6 HOH HOH . F 5 HOH A 84 584 87 HOH HOH . F 5 HOH A 85 585 19 HOH HOH . F 5 HOH A 86 586 110 HOH HOH . F 5 HOH A 87 587 61 HOH HOH . F 5 HOH A 88 588 117 HOH HOH . F 5 HOH A 89 589 89 HOH HOH . F 5 HOH A 90 590 30 HOH HOH . F 5 HOH A 91 591 107 HOH HOH . F 5 HOH A 92 592 11 HOH HOH . F 5 HOH A 93 593 75 HOH HOH . F 5 HOH A 94 594 20 HOH HOH . F 5 HOH A 95 595 16 HOH HOH . F 5 HOH A 96 596 53 HOH HOH . F 5 HOH A 97 597 84 HOH HOH . F 5 HOH A 98 598 23 HOH HOH . F 5 HOH A 99 599 32 HOH HOH . F 5 HOH A 100 600 132 HOH HOH . F 5 HOH A 101 601 22 HOH HOH . F 5 HOH A 102 602 104 HOH HOH . F 5 HOH A 103 603 100 HOH HOH . F 5 HOH A 104 604 14 HOH HOH . F 5 HOH A 105 605 102 HOH HOH . F 5 HOH A 106 606 12 HOH HOH . F 5 HOH A 107 607 88 HOH HOH . F 5 HOH A 108 608 2 HOH HOH . F 5 HOH A 109 609 52 HOH HOH . F 5 HOH A 110 610 50 HOH HOH . F 5 HOH A 111 611 66 HOH HOH . F 5 HOH A 112 612 57 HOH HOH . F 5 HOH A 113 613 38 HOH HOH . F 5 HOH A 114 614 63 HOH HOH . F 5 HOH A 115 615 25 HOH HOH . F 5 HOH A 116 616 129 HOH HOH . F 5 HOH A 117 617 94 HOH HOH . F 5 HOH A 118 618 10 HOH HOH . F 5 HOH A 119 619 131 HOH HOH . F 5 HOH A 120 620 76 HOH HOH . F 5 HOH A 121 621 105 HOH HOH . F 5 HOH A 122 622 106 HOH HOH . F 5 HOH A 123 623 21 HOH HOH . F 5 HOH A 124 624 101 HOH HOH . F 5 HOH A 125 625 46 HOH HOH . F 5 HOH A 126 626 73 HOH HOH . F 5 HOH A 127 627 67 HOH HOH . F 5 HOH A 128 628 99 HOH HOH . F 5 HOH A 129 629 108 HOH HOH . F 5 HOH A 130 630 130 HOH HOH . F 5 HOH A 131 631 96 HOH HOH . F 5 HOH A 132 632 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 NOS . . . B 2 -2.076 8.495 -25.655 1 32.69 ? N9 NOS 401 A 1 HETATM 2 C C4 NOS . . . B 2 -2.337 9.805 -25.66 1 33.45 ? C4 NOS 401 A 1 HETATM 3 N N3 NOS . . . B 2 -2.051 10.873 -24.9 1 34.25 ? N3 NOS 401 A 1 HETATM 4 C C2 NOS . . . B 2 -2.52 12.089 -25.247 1 33.74 ? C2 NOS 401 A 1 HETATM 5 N N1 NOS . . . B 2 -3.296 12.377 -26.32 1 33.68 ? N1 NOS 401 A 1 HETATM 6 C C6 NOS . . . B 2 -3.664 11.389 -27.143 1 33.86 ? C6 NOS 401 A 1 HETATM 7 O O6 NOS . . . B 2 -4.427 11.57 -28.234 1 35.39 ? O6 NOS 401 A 1 HETATM 8 C C5 NOS . . . B 2 -3.2 10.043 -26.842 1 34.03 ? C5 NOS 401 A 1 HETATM 9 N N7 NOS . . . B 2 -3.392 8.888 -27.453 1 36.56 ? N7 NOS 401 A 1 HETATM 10 C C8 NOS . . . B 2 -2.718 7.975 -26.716 1 36.38 ? C8 NOS 401 A 1 HETATM 11 C C5' NOS . . . B 2 0.585 6.775 -21.795 1 26.73 ? C5' NOS 401 A 1 HETATM 12 O O5' NOS . . . B 2 0.556 5.463 -21.116 1 23.58 ? O5' NOS 401 A 1 HETATM 13 C C4' NOS . . . B 2 0.136 6.829 -23.251 1 26.39 ? C4' NOS 401 A 1 HETATM 14 O O4' NOS . . . B 2 -0.884 7.805 -23.48 1 30.48 ? O4' NOS 401 A 1 HETATM 15 C C1' NOS . . . B 2 -1.367 7.505 -24.783 1 30.97 ? C1' NOS 401 A 1 HETATM 16 C C2' NOS . . . B 2 -0.124 6.953 -25.413 1 30.07 ? C2' NOS 401 A 1 HETATM 17 O O2' NOS . . . B 2 -0.225 5.52 -25.379 1 30.62 ? O2' NOS 401 A 1 HETATM 18 C C3' NOS . . . B 2 0.872 7.44 -24.419 1 27.83 ? C3' NOS 401 A 1 HETATM 19 O O3' NOS . . . B 2 2.192 7.082 -24.796 1 32.55 ? O3' NOS 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 1300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 19 #