data_6III
#
_model_server_result.job_id            9WH-1ATOS4S1lCxVxL73bA 
_model_server_result.datetime_utc      '2024-11-28 13:15:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6iii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6III 
#
_exptl.entry_id    6III 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6III 
_cell.length_a            71.424 
_cell.length_b            71.424 
_cell.length_c            363.446 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6III 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 251 A ASN 247 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc2 A OD2 ASP 260 A ASP 256 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc3 A OD1 ASP 260 A ASP 256 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc4 A OD2 ASP 260 A ASP 256 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc5 B O2 2PN . A 2PN 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc6 B O6 2PN . A 2PN 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc7 B O1 2PN . A 2PN 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc8 C O1P AMP . A AMP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc9 D MG MG . A MG 503 1_555 F O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 26 n n 
P O2P AMP sing 27 n n 
P O3P AMP sing 28 n n 
P O5' AMP sing 29 n n 
O2P HOP2 AMP sing 30 n n 
O3P HOP3 AMP sing 31 n n 
O5' C5' AMP sing 32 n n 
C5' C4' AMP sing 33 n n 
C5' "H5'1" AMP sing 34 n n 
C5' "H5'2" AMP sing 35 n n 
C4' O4' AMP sing 36 n n 
C4' C3' AMP sing 37 n n 
C4' H4' AMP sing 38 n n 
O4' C1' AMP sing 39 n n 
C3' O3' AMP sing 40 n n 
C3' C2' AMP sing 41 n n 
C3' H3' AMP sing 42 n n 
O3' HO3' AMP sing 43 n n 
C2' O2' AMP sing 44 n n 
C2' C1' AMP sing 45 n n 
C2' H2' AMP sing 46 n n 
O2' HO2' AMP sing 47 n n 
C1' N9 AMP sing 48 n n 
C1' H1' AMP sing 49 n n 
N9 C8 AMP sing 50 n y 
N9 C4 AMP sing 51 n y 
C8 N7 AMP doub 52 n y 
C8 H8 AMP sing 53 n n 
N7 C5 AMP sing 54 n y 
C5 C6 AMP sing 55 n y 
C5 C4 AMP doub 56 n y 
C6 N6 AMP sing 57 n n 
C6 N1 AMP doub 58 n y 
N6 HN61 AMP sing 59 n n 
N6 HN62 AMP sing 60 n n 
N1 C2 AMP sing 61 n y 
C2 N3 AMP doub 62 n y 
C2 H2 AMP sing 63 n n 
N3 C4 AMP sing 64 n y 
#
_atom_sites.entry_id                     6III 
_atom_sites.fract_transf_matrix[1][1]    0.014001 
_atom_sites.fract_transf_matrix[1][2]    0.008083 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002751 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2PN A 1 501 1 2PN 2PN . 
C 3 AMP A 1 502 1 AMP AMP . 
D 4 MG A 1 503 1 MG MG . 
E 4 MG A 1 504 2 MG MG . 
F 5 HOH A 1 601 138 HOH HOH . 
F 5 HOH A 2 602 137 HOH HOH . 
F 5 HOH A 3 603 26 HOH HOH . 
F 5 HOH A 4 604 57 HOH HOH . 
F 5 HOH A 5 605 115 HOH HOH . 
F 5 HOH A 6 606 100 HOH HOH . 
F 5 HOH A 7 607 82 HOH HOH . 
F 5 HOH A 8 608 11 HOH HOH . 
F 5 HOH A 9 609 126 HOH HOH . 
F 5 HOH A 10 610 6 HOH HOH . 
F 5 HOH A 11 611 52 HOH HOH . 
F 5 HOH A 12 612 78 HOH HOH . 
F 5 HOH A 13 613 94 HOH HOH . 
F 5 HOH A 14 614 9 HOH HOH . 
F 5 HOH A 15 615 23 HOH HOH . 
F 5 HOH A 16 616 40 HOH HOH . 
F 5 HOH A 17 617 41 HOH HOH . 
F 5 HOH A 18 618 36 HOH HOH . 
F 5 HOH A 19 619 34 HOH HOH . 
F 5 HOH A 20 620 44 HOH HOH . 
F 5 HOH A 21 621 14 HOH HOH . 
F 5 HOH A 22 622 39 HOH HOH . 
F 5 HOH A 23 623 31 HOH HOH . 
F 5 HOH A 24 624 93 HOH HOH . 
F 5 HOH A 25 625 24 HOH HOH . 
F 5 HOH A 26 626 1 HOH HOH . 
F 5 HOH A 27 627 7 HOH HOH . 
F 5 HOH A 28 628 69 HOH HOH . 
F 5 HOH A 29 629 72 HOH HOH . 
F 5 HOH A 30 630 85 HOH HOH . 
F 5 HOH A 31 631 50 HOH HOH . 
F 5 HOH A 32 632 102 HOH HOH . 
F 5 HOH A 33 633 81 HOH HOH . 
F 5 HOH A 34 634 105 HOH HOH . 
F 5 HOH A 35 635 128 HOH HOH . 
F 5 HOH A 36 636 5 HOH HOH . 
F 5 HOH A 37 637 47 HOH HOH . 
F 5 HOH A 38 638 96 HOH HOH . 
F 5 HOH A 39 639 32 HOH HOH . 
F 5 HOH A 40 640 84 HOH HOH . 
F 5 HOH A 41 641 58 HOH HOH . 
F 5 HOH A 42 642 30 HOH HOH . 
F 5 HOH A 43 643 27 HOH HOH . 
F 5 HOH A 44 644 10 HOH HOH . 
F 5 HOH A 45 645 17 HOH HOH . 
F 5 HOH A 46 646 95 HOH HOH . 
F 5 HOH A 47 647 38 HOH HOH . 
F 5 HOH A 48 648 46 HOH HOH . 
F 5 HOH A 49 649 62 HOH HOH . 
F 5 HOH A 50 650 89 HOH HOH . 
F 5 HOH A 51 651 45 HOH HOH . 
F 5 HOH A 52 652 3 HOH HOH . 
F 5 HOH A 53 653 65 HOH HOH . 
F 5 HOH A 54 654 108 HOH HOH . 
F 5 HOH A 55 655 28 HOH HOH . 
F 5 HOH A 56 656 4 HOH HOH . 
F 5 HOH A 57 657 64 HOH HOH . 
F 5 HOH A 58 658 48 HOH HOH . 
F 5 HOH A 59 659 33 HOH HOH . 
F 5 HOH A 60 660 87 HOH HOH . 
F 5 HOH A 61 661 54 HOH HOH . 
F 5 HOH A 62 662 86 HOH HOH . 
F 5 HOH A 63 663 19 HOH HOH . 
F 5 HOH A 64 664 56 HOH HOH . 
F 5 HOH A 65 665 8 HOH HOH . 
F 5 HOH A 66 666 55 HOH HOH . 
F 5 HOH A 67 667 15 HOH HOH . 
F 5 HOH A 68 668 70 HOH HOH . 
F 5 HOH A 69 669 66 HOH HOH . 
F 5 HOH A 70 670 29 HOH HOH . 
F 5 HOH A 71 671 37 HOH HOH . 
F 5 HOH A 72 672 16 HOH HOH . 
F 5 HOH A 73 673 68 HOH HOH . 
F 5 HOH A 74 674 97 HOH HOH . 
F 5 HOH A 75 675 118 HOH HOH . 
F 5 HOH A 76 676 73 HOH HOH . 
F 5 HOH A 77 677 76 HOH HOH . 
F 5 HOH A 78 678 63 HOH HOH . 
F 5 HOH A 79 679 21 HOH HOH . 
F 5 HOH A 80 680 74 HOH HOH . 
F 5 HOH A 81 681 2 HOH HOH . 
F 5 HOH A 82 682 42 HOH HOH . 
F 5 HOH A 83 683 43 HOH HOH . 
F 5 HOH A 84 684 20 HOH HOH . 
F 5 HOH A 85 685 61 HOH HOH . 
F 5 HOH A 86 686 101 HOH HOH . 
F 5 HOH A 87 687 25 HOH HOH . 
F 5 HOH A 88 688 136 HOH HOH . 
F 5 HOH A 89 689 132 HOH HOH . 
F 5 HOH A 90 690 83 HOH HOH . 
F 5 HOH A 91 691 53 HOH HOH . 
F 5 HOH A 92 692 134 HOH HOH . 
F 5 HOH A 93 693 59 HOH HOH . 
F 5 HOH A 94 694 75 HOH HOH . 
F 5 HOH A 95 695 18 HOH HOH . 
F 5 HOH A 96 696 109 HOH HOH . 
F 5 HOH A 97 697 130 HOH HOH . 
F 5 HOH A 98 698 77 HOH HOH . 
F 5 HOH A 99 699 60 HOH HOH . 
F 5 HOH A 100 700 127 HOH HOH . 
F 5 HOH A 101 701 103 HOH HOH . 
F 5 HOH A 102 702 49 HOH HOH . 
F 5 HOH A 103 703 135 HOH HOH . 
F 5 HOH A 104 704 71 HOH HOH . 
F 5 HOH A 105 705 104 HOH HOH . 
F 5 HOH A 106 706 119 HOH HOH . 
F 5 HOH A 107 707 90 HOH HOH . 
F 5 HOH A 108 708 129 HOH HOH . 
F 5 HOH A 109 709 125 HOH HOH . 
F 5 HOH A 110 710 79 HOH HOH . 
F 5 HOH A 111 711 131 HOH HOH . 
F 5 HOH A 112 712 88 HOH HOH . 
F 5 HOH A 113 713 67 HOH HOH . 
F 5 HOH A 114 714 35 HOH HOH . 
F 5 HOH A 115 715 51 HOH HOH . 
F 5 HOH A 116 716 117 HOH HOH . 
F 5 HOH A 117 717 121 HOH HOH . 
F 5 HOH A 118 718 112 HOH HOH . 
F 5 HOH A 119 719 98 HOH HOH . 
F 5 HOH A 120 720 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 3 -2.053 52.076 177.083 1 69.74 ? P AMP 502 A 1 
HETATM 2 O O1P AMP . . . C 3 -1.449 51.661 175.754 1 56.05 ? O1P AMP 502 A 1 
HETATM 3 O O2P AMP . . . C 3 -3.474 51.602 177.324 1 65.16 ? O2P AMP 502 A 1 
HETATM 4 O O3P AMP . . . C 3 -1.132 51.852 178.27 1 59.72 ? O3P AMP 502 A 1 
HETATM 5 O O5' AMP . . . C 3 -2.276 53.639 176.833 1 60.66 ? O5' AMP 502 A 1 
HETATM 6 C C5' AMP . . . C 3 -1.462 54.637 177.43 1 55.98 ? C5' AMP 502 A 1 
HETATM 7 C C4' AMP . . . C 3 -1.869 56.016 176.955 1 58.43 ? C4' AMP 502 A 1 
HETATM 8 O O4' AMP . . . C 3 -0.798 56.95 177.247 1 54.39 ? O4' AMP 502 A 1 
HETATM 9 C C3' AMP . . . C 3 -2.153 56.139 175.458 1 55.78 ? C3' AMP 502 A 1 
HETATM 10 O O3' AMP . . . C 3 -3.155 57.131 175.232 1 53.14 ? O3' AMP 502 A 1 
HETATM 11 C C2' AMP . . . C 3 -0.822 56.628 174.894 1 57.69 ? C2' AMP 502 A 1 
HETATM 12 O O2' AMP . . . C 3 -0.938 57.388 173.709 1 49.71 ? O2' AMP 502 A 1 
HETATM 13 C C1' AMP . . . C 3 -0.255 57.469 176.047 1 52.49 ? C1' AMP 502 A 1 
HETATM 14 N N9 AMP . . . C 3 1.209 57.407 176.143 1 54.46 ? N9 AMP 502 A 1 
HETATM 15 C C8 AMP . . . C 3 1.957 56.283 176.223 1 55.68 ? C8 AMP 502 A 1 
HETATM 16 N N7 AMP . . . C 3 3.289 56.571 176.274 1 55.32 ? N7 AMP 502 A 1 
HETATM 17 C C5 AMP . . . C 3 3.409 57.915 176.216 1 55.96 ? C5 AMP 502 A 1 
HETATM 18 C C6 AMP . . . C 3 4.522 58.902 176.221 1 54.9 ? C6 AMP 502 A 1 
HETATM 19 N N6 AMP . . . C 3 5.82 58.511 176.305 1 55.86 ? N6 AMP 502 A 1 
HETATM 20 N N1 AMP . . . C 3 4.202 60.215 176.129 1 51.41 ? N1 AMP 502 A 1 
HETATM 21 C C2 AMP . . . C 3 2.927 60.631 176.037 1 53.79 ? C2 AMP 502 A 1 
HETATM 22 N N3 AMP . . . C 3 1.873 59.796 176.027 1 56.01 ? N3 AMP 502 A 1 
HETATM 23 C C4 AMP . . . C 3 2.039 58.454 176.119 1 55.7 ? C4 AMP 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           407 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           23 
#