data_6III # _model_server_result.job_id 2W-cR_xqoBc-qS-ET7sMEA _model_server_result.datetime_utc '2024-11-12 20:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6III # _exptl.entry_id 6III _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6III _cell.length_a 71.424 _cell.length_b 71.424 _cell.length_c 363.446 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6III _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 251 A ASN 247 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A OD2 ASP 260 A ASP 256 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc3 A OD1 ASP 260 A ASP 256 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A OD2 ASP 260 A ASP 256 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc5 B O2 2PN . A 2PN 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 B O6 2PN . A 2PN 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 B O1 2PN . A 2PN 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 C O1P AMP . A AMP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 D MG MG . A MG 503 1_555 F O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 26 n n P O2P AMP sing 27 n n P O3P AMP sing 28 n n P O5' AMP sing 29 n n O2P HOP2 AMP sing 30 n n O3P HOP3 AMP sing 31 n n O5' C5' AMP sing 32 n n C5' C4' AMP sing 33 n n C5' "H5'1" AMP sing 34 n n C5' "H5'2" AMP sing 35 n n C4' O4' AMP sing 36 n n C4' C3' AMP sing 37 n n C4' H4' AMP sing 38 n n O4' C1' AMP sing 39 n n C3' O3' AMP sing 40 n n C3' C2' AMP sing 41 n n C3' H3' AMP sing 42 n n O3' HO3' AMP sing 43 n n C2' O2' AMP sing 44 n n C2' C1' AMP sing 45 n n C2' H2' AMP sing 46 n n O2' HO2' AMP sing 47 n n C1' N9 AMP sing 48 n n C1' H1' AMP sing 49 n n N9 C8 AMP sing 50 n y N9 C4 AMP sing 51 n y C8 N7 AMP doub 52 n y C8 H8 AMP sing 53 n n N7 C5 AMP sing 54 n y C5 C6 AMP sing 55 n y C5 C4 AMP doub 56 n y C6 N6 AMP sing 57 n n C6 N1 AMP doub 58 n y N6 HN61 AMP sing 59 n n N6 HN62 AMP sing 60 n n N1 C2 AMP sing 61 n y C2 N3 AMP doub 62 n y C2 H2 AMP sing 63 n n N3 C4 AMP sing 64 n y # _atom_sites.entry_id 6III _atom_sites.fract_transf_matrix[1][1] 0.014001 _atom_sites.fract_transf_matrix[1][2] 0.008083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PN A 1 501 1 2PN 2PN . C 3 AMP A 1 502 1 AMP AMP . D 4 MG A 1 503 1 MG MG . E 4 MG A 1 504 2 MG MG . F 5 HOH A 1 601 138 HOH HOH . F 5 HOH A 2 602 137 HOH HOH . F 5 HOH A 3 603 26 HOH HOH . F 5 HOH A 4 604 57 HOH HOH . F 5 HOH A 5 605 115 HOH HOH . F 5 HOH A 6 606 100 HOH HOH . F 5 HOH A 7 607 82 HOH HOH . F 5 HOH A 8 608 11 HOH HOH . F 5 HOH A 9 609 126 HOH HOH . F 5 HOH A 10 610 6 HOH HOH . F 5 HOH A 11 611 52 HOH HOH . F 5 HOH A 12 612 78 HOH HOH . F 5 HOH A 13 613 94 HOH HOH . F 5 HOH A 14 614 9 HOH HOH . F 5 HOH A 15 615 23 HOH HOH . F 5 HOH A 16 616 40 HOH HOH . F 5 HOH A 17 617 41 HOH HOH . F 5 HOH A 18 618 36 HOH HOH . F 5 HOH A 19 619 34 HOH HOH . F 5 HOH A 20 620 44 HOH HOH . F 5 HOH A 21 621 14 HOH HOH . F 5 HOH A 22 622 39 HOH HOH . F 5 HOH A 23 623 31 HOH HOH . F 5 HOH A 24 624 93 HOH HOH . F 5 HOH A 25 625 24 HOH HOH . F 5 HOH A 26 626 1 HOH HOH . F 5 HOH A 27 627 7 HOH HOH . F 5 HOH A 28 628 69 HOH HOH . F 5 HOH A 29 629 72 HOH HOH . F 5 HOH A 30 630 85 HOH HOH . F 5 HOH A 31 631 50 HOH HOH . F 5 HOH A 32 632 102 HOH HOH . F 5 HOH A 33 633 81 HOH HOH . F 5 HOH A 34 634 105 HOH HOH . F 5 HOH A 35 635 128 HOH HOH . F 5 HOH A 36 636 5 HOH HOH . F 5 HOH A 37 637 47 HOH HOH . F 5 HOH A 38 638 96 HOH HOH . F 5 HOH A 39 639 32 HOH HOH . F 5 HOH A 40 640 84 HOH HOH . F 5 HOH A 41 641 58 HOH HOH . F 5 HOH A 42 642 30 HOH HOH . F 5 HOH A 43 643 27 HOH HOH . F 5 HOH A 44 644 10 HOH HOH . F 5 HOH A 45 645 17 HOH HOH . F 5 HOH A 46 646 95 HOH HOH . F 5 HOH A 47 647 38 HOH HOH . F 5 HOH A 48 648 46 HOH HOH . F 5 HOH A 49 649 62 HOH HOH . F 5 HOH A 50 650 89 HOH HOH . F 5 HOH A 51 651 45 HOH HOH . F 5 HOH A 52 652 3 HOH HOH . F 5 HOH A 53 653 65 HOH HOH . F 5 HOH A 54 654 108 HOH HOH . F 5 HOH A 55 655 28 HOH HOH . F 5 HOH A 56 656 4 HOH HOH . F 5 HOH A 57 657 64 HOH HOH . F 5 HOH A 58 658 48 HOH HOH . F 5 HOH A 59 659 33 HOH HOH . F 5 HOH A 60 660 87 HOH HOH . F 5 HOH A 61 661 54 HOH HOH . F 5 HOH A 62 662 86 HOH HOH . F 5 HOH A 63 663 19 HOH HOH . F 5 HOH A 64 664 56 HOH HOH . F 5 HOH A 65 665 8 HOH HOH . F 5 HOH A 66 666 55 HOH HOH . F 5 HOH A 67 667 15 HOH HOH . F 5 HOH A 68 668 70 HOH HOH . F 5 HOH A 69 669 66 HOH HOH . F 5 HOH A 70 670 29 HOH HOH . F 5 HOH A 71 671 37 HOH HOH . F 5 HOH A 72 672 16 HOH HOH . F 5 HOH A 73 673 68 HOH HOH . F 5 HOH A 74 674 97 HOH HOH . F 5 HOH A 75 675 118 HOH HOH . F 5 HOH A 76 676 73 HOH HOH . F 5 HOH A 77 677 76 HOH HOH . F 5 HOH A 78 678 63 HOH HOH . F 5 HOH A 79 679 21 HOH HOH . F 5 HOH A 80 680 74 HOH HOH . F 5 HOH A 81 681 2 HOH HOH . F 5 HOH A 82 682 42 HOH HOH . F 5 HOH A 83 683 43 HOH HOH . F 5 HOH A 84 684 20 HOH HOH . F 5 HOH A 85 685 61 HOH HOH . F 5 HOH A 86 686 101 HOH HOH . F 5 HOH A 87 687 25 HOH HOH . F 5 HOH A 88 688 136 HOH HOH . F 5 HOH A 89 689 132 HOH HOH . F 5 HOH A 90 690 83 HOH HOH . F 5 HOH A 91 691 53 HOH HOH . F 5 HOH A 92 692 134 HOH HOH . F 5 HOH A 93 693 59 HOH HOH . F 5 HOH A 94 694 75 HOH HOH . F 5 HOH A 95 695 18 HOH HOH . F 5 HOH A 96 696 109 HOH HOH . F 5 HOH A 97 697 130 HOH HOH . F 5 HOH A 98 698 77 HOH HOH . F 5 HOH A 99 699 60 HOH HOH . F 5 HOH A 100 700 127 HOH HOH . F 5 HOH A 101 701 103 HOH HOH . F 5 HOH A 102 702 49 HOH HOH . F 5 HOH A 103 703 135 HOH HOH . F 5 HOH A 104 704 71 HOH HOH . F 5 HOH A 105 705 104 HOH HOH . F 5 HOH A 106 706 119 HOH HOH . F 5 HOH A 107 707 90 HOH HOH . F 5 HOH A 108 708 129 HOH HOH . F 5 HOH A 109 709 125 HOH HOH . F 5 HOH A 110 710 79 HOH HOH . F 5 HOH A 111 711 131 HOH HOH . F 5 HOH A 112 712 88 HOH HOH . F 5 HOH A 113 713 67 HOH HOH . F 5 HOH A 114 714 35 HOH HOH . F 5 HOH A 115 715 51 HOH HOH . F 5 HOH A 116 716 117 HOH HOH . F 5 HOH A 117 717 121 HOH HOH . F 5 HOH A 118 718 112 HOH HOH . F 5 HOH A 119 719 98 HOH HOH . F 5 HOH A 120 720 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 -2.053 52.076 177.083 1 69.74 ? P AMP 502 A 1 HETATM 2 O O1P AMP . . . C 3 -1.449 51.661 175.754 1 56.05 ? O1P AMP 502 A 1 HETATM 3 O O2P AMP . . . C 3 -3.474 51.602 177.324 1 65.16 ? O2P AMP 502 A 1 HETATM 4 O O3P AMP . . . C 3 -1.132 51.852 178.27 1 59.72 ? O3P AMP 502 A 1 HETATM 5 O O5' AMP . . . C 3 -2.276 53.639 176.833 1 60.66 ? O5' AMP 502 A 1 HETATM 6 C C5' AMP . . . C 3 -1.462 54.637 177.43 1 55.98 ? C5' AMP 502 A 1 HETATM 7 C C4' AMP . . . C 3 -1.869 56.016 176.955 1 58.43 ? C4' AMP 502 A 1 HETATM 8 O O4' AMP . . . C 3 -0.798 56.95 177.247 1 54.39 ? O4' AMP 502 A 1 HETATM 9 C C3' AMP . . . C 3 -2.153 56.139 175.458 1 55.78 ? C3' AMP 502 A 1 HETATM 10 O O3' AMP . . . C 3 -3.155 57.131 175.232 1 53.14 ? O3' AMP 502 A 1 HETATM 11 C C2' AMP . . . C 3 -0.822 56.628 174.894 1 57.69 ? C2' AMP 502 A 1 HETATM 12 O O2' AMP . . . C 3 -0.938 57.388 173.709 1 49.71 ? O2' AMP 502 A 1 HETATM 13 C C1' AMP . . . C 3 -0.255 57.469 176.047 1 52.49 ? C1' AMP 502 A 1 HETATM 14 N N9 AMP . . . C 3 1.209 57.407 176.143 1 54.46 ? N9 AMP 502 A 1 HETATM 15 C C8 AMP . . . C 3 1.957 56.283 176.223 1 55.68 ? C8 AMP 502 A 1 HETATM 16 N N7 AMP . . . C 3 3.289 56.571 176.274 1 55.32 ? N7 AMP 502 A 1 HETATM 17 C C5 AMP . . . C 3 3.409 57.915 176.216 1 55.96 ? C5 AMP 502 A 1 HETATM 18 C C6 AMP . . . C 3 4.522 58.902 176.221 1 54.9 ? C6 AMP 502 A 1 HETATM 19 N N6 AMP . . . C 3 5.82 58.511 176.305 1 55.86 ? N6 AMP 502 A 1 HETATM 20 N N1 AMP . . . C 3 4.202 60.215 176.129 1 51.41 ? N1 AMP 502 A 1 HETATM 21 C C2 AMP . . . C 3 2.927 60.631 176.037 1 53.79 ? C2 AMP 502 A 1 HETATM 22 N N3 AMP . . . C 3 1.873 59.796 176.027 1 56.01 ? N3 AMP 502 A 1 HETATM 23 C C4 AMP . . . C 3 2.039 58.454 176.119 1 55.7 ? C4 AMP 502 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #