data_6IJI # _model_server_result.job_id L-Sx_nGg8ndXs0h3Mk9HoQ _model_server_result.datetime_utc '2024-11-22 10:06:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 6IJI # _exptl.entry_id 6IJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.473 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[5-methyl-1-(pyridin-4-yl)-1H-benzimidazol-2-yl]ethyl}-1H-benzo[de]isoquinoline-1,3(2H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IJI _cell.length_a 48.941 _cell.length_b 159.455 _cell.length_c 81.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 A OD1 ASP 118 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 B NE2 HIS 83 B HIS 529 1_555 E ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B NE2 HIS 117 B HIS 563 1_555 E ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 B OD2 ASP 118 B ASP 564 1_555 E ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc9 B OD1 ASP 118 B ASP 564 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc10 B OD1 ASP 228 B ASP 674 1_555 E ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C27 H20 N4 O2' _chem_comp.formula_weight 432.473 _chem_comp.id AEL _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[5-methyl-1-(pyridin-4-yl)-1H-benzimidazol-2-yl]ethyl}-1H-benzo[de]isoquinoline-1,3(2H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 AEL doub 1 n y C3 C4 AEL sing 2 n y C2 C1 AEL sing 3 n y C4 C5 AEL doub 4 n y C1 C10 AEL doub 5 n y C1 C6 AEL sing 6 n y C10 C9 AEL sing 7 n y C5 C6 AEL sing 8 n y C5 C11 AEL sing 9 n n C6 C7 AEL doub 10 n y C9 C8 AEL doub 11 n y O15 C11 AEL doub 12 n n C11 N12 AEL sing 13 n n C7 C8 AEL sing 14 n y C7 C13 AEL sing 15 n n N12 C13 AEL sing 16 n n N12 C16 AEL sing 17 n n C13 O14 AEL doub 18 n n C16 C17 AEL sing 19 n n C17 C18 AEL sing 20 n n N22 C18 AEL doub 21 n y N22 C21 AEL sing 22 n y C18 N19 AEL sing 23 n y C21 C26 AEL doub 24 n y C21 C20 AEL sing 25 n y C26 C25 AEL sing 26 n y C32 C31 AEL doub 27 n y C32 C27 AEL sing 28 n y N19 C20 AEL sing 29 n y N19 C27 AEL sing 30 n n C20 C23 AEL doub 31 n y C25 C33 AEL sing 32 n n C25 C24 AEL doub 33 n y C31 N30 AEL sing 34 n y C27 C28 AEL doub 35 n y C23 C24 AEL sing 36 n y N30 C29 AEL doub 37 n y C28 C29 AEL sing 38 n y C2 H1 AEL sing 39 n n C3 H2 AEL sing 40 n n C4 H3 AEL sing 41 n n C8 H4 AEL sing 42 n n C9 H5 AEL sing 43 n n C10 H6 AEL sing 44 n n C16 H7 AEL sing 45 n n C16 H8 AEL sing 46 n n C17 H9 AEL sing 47 n n C17 H10 AEL sing 48 n n C23 H11 AEL sing 49 n n C24 H12 AEL sing 50 n n C26 H13 AEL sing 51 n n C28 H14 AEL sing 52 n n C29 H15 AEL sing 53 n n C31 H16 AEL sing 54 n n C32 H17 AEL sing 55 n n C33 H18 AEL sing 56 n n C33 H19 AEL sing 57 n n C33 H20 AEL sing 58 n n # _atom_sites.entry_id 6IJI _atom_sites.fract_transf_matrix[1][1] 0.020433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 777 ZN ZN . D 3 MG A 1 802 778 MG MG . E 2 ZN B 1 801 777 ZN ZN . F 3 MG B 1 802 778 MG MG . G 4 AEL B 1 803 1 AEL LYF . H 5 HOH A 1 901 4 HOH HOH . H 5 HOH A 2 902 63 HOH HOH . H 5 HOH A 3 903 35 HOH HOH . H 5 HOH A 4 904 90 HOH HOH . H 5 HOH A 5 905 87 HOH HOH . H 5 HOH A 6 906 17 HOH HOH . H 5 HOH A 7 907 4 HOH HOH . H 5 HOH A 8 908 56 HOH HOH . H 5 HOH A 9 909 1 HOH HOH . H 5 HOH A 10 910 43 HOH HOH . H 5 HOH A 11 911 44 HOH HOH . H 5 HOH A 12 912 1 HOH HOH . H 5 HOH A 13 913 22 HOH HOH . H 5 HOH A 14 914 120 HOH HOH . H 5 HOH A 15 915 131 HOH HOH . H 5 HOH A 16 916 18 HOH HOH . H 5 HOH A 17 917 144 HOH HOH . H 5 HOH A 18 918 38 HOH HOH . H 5 HOH A 19 919 52 HOH HOH . H 5 HOH A 20 920 109 HOH HOH . H 5 HOH A 21 921 5 HOH HOH . H 5 HOH A 22 922 3 HOH HOH . H 5 HOH A 23 923 58 HOH HOH . H 5 HOH A 24 924 125 HOH HOH . H 5 HOH A 25 925 196 HOH HOH . H 5 HOH A 26 926 38 HOH HOH . H 5 HOH A 27 927 225 HOH HOH . H 5 HOH A 28 928 212 HOH HOH . I 5 HOH B 1 901 162 HOH HOH . I 5 HOH B 2 902 15 HOH HOH . I 5 HOH B 3 903 26 HOH HOH . I 5 HOH B 4 904 14 HOH HOH . I 5 HOH B 5 905 74 HOH HOH . I 5 HOH B 6 906 2 HOH HOH . I 5 HOH B 7 907 15 HOH HOH . I 5 HOH B 8 908 29 HOH HOH . I 5 HOH B 9 909 119 HOH HOH . I 5 HOH B 10 910 21 HOH HOH . I 5 HOH B 11 911 16 HOH HOH . I 5 HOH B 12 912 3 HOH HOH . I 5 HOH B 13 913 12 HOH HOH . I 5 HOH B 14 914 15 HOH HOH . I 5 HOH B 15 915 13 HOH HOH . I 5 HOH B 16 916 78 HOH HOH . I 5 HOH B 17 917 80 HOH HOH . I 5 HOH B 18 918 13 HOH HOH . I 5 HOH B 19 919 81 HOH HOH . I 5 HOH B 20 920 37 HOH HOH . I 5 HOH B 21 921 59 HOH HOH . I 5 HOH B 22 922 18 HOH HOH . I 5 HOH B 23 923 47 HOH HOH . I 5 HOH B 24 924 10 HOH HOH . I 5 HOH B 25 925 229 HOH HOH . I 5 HOH B 26 926 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 AEL . . . G 4 19.176 18.849 -17.826 1 38.27 ? C11 AEL 803 B 1 HETATM 2 C C13 AEL . . . G 4 17.739 20.748 -17.177 1 39.14 ? C13 AEL 803 B 1 HETATM 3 O O15 AEL . . . G 4 19.314 17.655 -17.89 1 37.44 ? O15 AEL 803 B 1 HETATM 4 C C18 AEL . . . G 4 15.503 17.61 -15.144 1 43.78 ? C18 AEL 803 B 1 HETATM 5 C C20 AEL . . . G 4 14.742 15.731 -14.292 1 45.42 ? C20 AEL 803 B 1 HETATM 6 C C1 AEL . . . G 4 20.948 22.078 -18.651 1 37.83 ? C1 AEL 803 B 1 HETATM 7 C C2 AEL . . . G 4 22.175 21.56 -19.092 1 37.28 ? C2 AEL 803 B 1 HETATM 8 C C3 AEL . . . G 4 22.392 20.223 -19.115 1 37.66 ? C3 AEL 803 B 1 HETATM 9 C C4 AEL . . . G 4 21.407 19.335 -18.74 1 38 ? C4 AEL 803 B 1 HETATM 10 C C5 AEL . . . G 4 20.196 19.8 -18.299 1 38.01 ? C5 AEL 803 B 1 HETATM 11 C C6 AEL . . . G 4 19.955 21.181 -18.23 1 37.92 ? C6 AEL 803 B 1 HETATM 12 C C7 AEL . . . G 4 18.769 21.68 -17.67 1 38.04 ? C7 AEL 803 B 1 HETATM 13 C C8 AEL . . . G 4 18.585 23.029 -17.537 1 37.82 ? C8 AEL 803 B 1 HETATM 14 C C9 AEL . . . G 4 19.561 23.907 -17.959 1 37.78 ? C9 AEL 803 B 1 HETATM 15 C C10 AEL . . . G 4 20.713 23.458 -18.51 1 37.78 ? C10 AEL 803 B 1 HETATM 16 N N12 AEL . . . G 4 18.008 19.387 -17.302 1 39.57 ? N12 AEL 803 B 1 HETATM 17 O O14 AEL . . . G 4 16.707 21.122 -16.683 1 38.82 ? O14 AEL 803 B 1 HETATM 18 C C16 AEL . . . G 4 16.96 18.455 -16.928 1 40.94 ? C16 AEL 803 B 1 HETATM 19 C C17 AEL . . . G 4 16.473 18.672 -15.517 1 42.19 ? C17 AEL 803 B 1 HETATM 20 N N19 AEL . . . G 4 15.88 16.492 -14.458 1 44.93 ? N19 AEL 803 B 1 HETATM 21 C C21 AEL . . . G 4 13.728 16.453 -14.894 1 45.41 ? C21 AEL 803 B 1 HETATM 22 N N22 AEL . . . G 4 14.225 17.63 -15.426 1 43.95 ? N22 AEL 803 B 1 HETATM 23 C C23 AEL . . . G 4 14.504 14.558 -13.603 1 45.55 ? C23 AEL 803 B 1 HETATM 24 C C24 AEL . . . G 4 13.2 14.118 -13.518 1 46.76 ? C24 AEL 803 B 1 HETATM 25 C C25 AEL . . . G 4 12.153 14.802 -14.131 1 47.27 ? C25 AEL 803 B 1 HETATM 26 C C26 AEL . . . G 4 12.433 15.976 -14.817 1 46.4 ? C26 AEL 803 B 1 HETATM 27 C C27 AEL . . . G 4 17.137 16.175 -13.853 1 45.46 ? C27 AEL 803 B 1 HETATM 28 C C28 AEL . . . G 4 17.283 16.23 -12.485 1 45.84 ? C28 AEL 803 B 1 HETATM 29 C C29 AEL . . . G 4 18.477 15.853 -11.927 1 45.79 ? C29 AEL 803 B 1 HETATM 30 N N30 AEL . . . G 4 19.512 15.436 -12.641 1 46.86 ? N30 AEL 803 B 1 HETATM 31 C C31 AEL . . . G 4 19.35 15.389 -13.968 1 46.55 ? C31 AEL 803 B 1 HETATM 32 C C32 AEL . . . G 4 18.189 15.745 -14.605 1 45.73 ? C32 AEL 803 B 1 HETATM 33 C C33 AEL . . . G 4 10.752 14.252 -14.093 1 47.67 ? C33 AEL 803 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #