data_6IJP # _model_server_result.job_id PLO1h85S3LUMlPkUzecr7Q _model_server_result.datetime_utc '2025-02-17 13:34:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ijp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6IJP # _exptl.entry_id 6IJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IJP _cell.length_a 50.884 _cell.length_b 81.288 _cell.length_c 86.619 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 34 A HIS 13 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 A NE2 HIS 36 A HIS 15 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 A NE2 HIS 238 A HIS 217 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 A OD1 ASP 316 A ASP 295 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 B ZN ZN . A ZN 401 1_555 D O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 6IJP _atom_sites.fract_transf_matrix[1][1] 0.019653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 3 ZN ZN . C 3 IMP A 1 402 2 IMP IMP . D 4 HOH A 1 501 102 HOH HOH . D 4 HOH A 2 502 215 HOH HOH . D 4 HOH A 3 503 209 HOH HOH . D 4 HOH A 4 504 7 HOH HOH . D 4 HOH A 5 505 224 HOH HOH . D 4 HOH A 6 506 4 HOH HOH . D 4 HOH A 7 507 27 HOH HOH . D 4 HOH A 8 508 213 HOH HOH . D 4 HOH A 9 509 47 HOH HOH . D 4 HOH A 10 510 18 HOH HOH . D 4 HOH A 11 511 121 HOH HOH . D 4 HOH A 12 512 71 HOH HOH . D 4 HOH A 13 513 132 HOH HOH . D 4 HOH A 14 514 148 HOH HOH . D 4 HOH A 15 515 211 HOH HOH . D 4 HOH A 16 516 127 HOH HOH . D 4 HOH A 17 517 106 HOH HOH . D 4 HOH A 18 518 78 HOH HOH . D 4 HOH A 19 519 41 HOH HOH . D 4 HOH A 20 520 3 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 83 HOH HOH . D 4 HOH A 23 523 13 HOH HOH . D 4 HOH A 24 524 135 HOH HOH . D 4 HOH A 25 525 84 HOH HOH . D 4 HOH A 26 526 77 HOH HOH . D 4 HOH A 27 527 207 HOH HOH . D 4 HOH A 28 528 196 HOH HOH . D 4 HOH A 29 529 14 HOH HOH . D 4 HOH A 30 530 162 HOH HOH . D 4 HOH A 31 531 1 HOH HOH . D 4 HOH A 32 532 114 HOH HOH . D 4 HOH A 33 533 48 HOH HOH . D 4 HOH A 34 534 63 HOH HOH . D 4 HOH A 35 535 97 HOH HOH . D 4 HOH A 36 536 202 HOH HOH . D 4 HOH A 37 537 74 HOH HOH . D 4 HOH A 38 538 130 HOH HOH . D 4 HOH A 39 539 17 HOH HOH . D 4 HOH A 40 540 103 HOH HOH . D 4 HOH A 41 541 153 HOH HOH . D 4 HOH A 42 542 24 HOH HOH . D 4 HOH A 43 543 128 HOH HOH . D 4 HOH A 44 544 111 HOH HOH . D 4 HOH A 45 545 136 HOH HOH . D 4 HOH A 46 546 33 HOH HOH . D 4 HOH A 47 547 122 HOH HOH . D 4 HOH A 48 548 52 HOH HOH . D 4 HOH A 49 549 75 HOH HOH . D 4 HOH A 50 550 61 HOH HOH . D 4 HOH A 51 551 107 HOH HOH . D 4 HOH A 52 552 188 HOH HOH . D 4 HOH A 53 553 133 HOH HOH . D 4 HOH A 54 554 221 HOH HOH . D 4 HOH A 55 555 37 HOH HOH . D 4 HOH A 56 556 19 HOH HOH . D 4 HOH A 57 557 225 HOH HOH . D 4 HOH A 58 558 45 HOH HOH . D 4 HOH A 59 559 151 HOH HOH . D 4 HOH A 60 560 113 HOH HOH . D 4 HOH A 61 561 40 HOH HOH . D 4 HOH A 62 562 2 HOH HOH . D 4 HOH A 63 563 92 HOH HOH . D 4 HOH A 64 564 42 HOH HOH . D 4 HOH A 65 565 15 HOH HOH . D 4 HOH A 66 566 44 HOH HOH . D 4 HOH A 67 567 198 HOH HOH . D 4 HOH A 68 568 140 HOH HOH . D 4 HOH A 69 569 30 HOH HOH . D 4 HOH A 70 570 35 HOH HOH . D 4 HOH A 71 571 203 HOH HOH . D 4 HOH A 72 572 80 HOH HOH . D 4 HOH A 73 573 89 HOH HOH . D 4 HOH A 74 574 82 HOH HOH . D 4 HOH A 75 575 149 HOH HOH . D 4 HOH A 76 576 16 HOH HOH . D 4 HOH A 77 577 214 HOH HOH . D 4 HOH A 78 578 105 HOH HOH . D 4 HOH A 79 579 158 HOH HOH . D 4 HOH A 80 580 6 HOH HOH . D 4 HOH A 81 581 5 HOH HOH . D 4 HOH A 82 582 85 HOH HOH . D 4 HOH A 83 583 147 HOH HOH . D 4 HOH A 84 584 69 HOH HOH . D 4 HOH A 85 585 38 HOH HOH . D 4 HOH A 86 586 90 HOH HOH . D 4 HOH A 87 587 67 HOH HOH . D 4 HOH A 88 588 29 HOH HOH . D 4 HOH A 89 589 56 HOH HOH . D 4 HOH A 90 590 12 HOH HOH . D 4 HOH A 91 591 8 HOH HOH . D 4 HOH A 92 592 220 HOH HOH . D 4 HOH A 93 593 86 HOH HOH . D 4 HOH A 94 594 9 HOH HOH . D 4 HOH A 95 595 193 HOH HOH . D 4 HOH A 96 596 22 HOH HOH . D 4 HOH A 97 597 58 HOH HOH . D 4 HOH A 98 598 166 HOH HOH . D 4 HOH A 99 599 59 HOH HOH . D 4 HOH A 100 600 49 HOH HOH . D 4 HOH A 101 601 28 HOH HOH . D 4 HOH A 102 602 64 HOH HOH . D 4 HOH A 103 603 65 HOH HOH . D 4 HOH A 104 604 34 HOH HOH . D 4 HOH A 105 605 165 HOH HOH . D 4 HOH A 106 606 210 HOH HOH . D 4 HOH A 107 607 36 HOH HOH . D 4 HOH A 108 608 87 HOH HOH . D 4 HOH A 109 609 126 HOH HOH . D 4 HOH A 110 610 99 HOH HOH . D 4 HOH A 111 611 53 HOH HOH . D 4 HOH A 112 612 174 HOH HOH . D 4 HOH A 113 613 98 HOH HOH . D 4 HOH A 114 614 164 HOH HOH . D 4 HOH A 115 615 112 HOH HOH . D 4 HOH A 116 616 57 HOH HOH . D 4 HOH A 117 617 50 HOH HOH . D 4 HOH A 118 618 20 HOH HOH . D 4 HOH A 119 619 11 HOH HOH . D 4 HOH A 120 620 117 HOH HOH . D 4 HOH A 121 621 108 HOH HOH . D 4 HOH A 122 622 10 HOH HOH . D 4 HOH A 123 623 88 HOH HOH . D 4 HOH A 124 624 54 HOH HOH . D 4 HOH A 125 625 51 HOH HOH . D 4 HOH A 126 626 55 HOH HOH . D 4 HOH A 127 627 146 HOH HOH . D 4 HOH A 128 628 197 HOH HOH . D 4 HOH A 129 629 172 HOH HOH . D 4 HOH A 130 630 169 HOH HOH . D 4 HOH A 131 631 23 HOH HOH . D 4 HOH A 132 632 62 HOH HOH . D 4 HOH A 133 633 115 HOH HOH . D 4 HOH A 134 634 139 HOH HOH . D 4 HOH A 135 635 116 HOH HOH . D 4 HOH A 136 636 123 HOH HOH . D 4 HOH A 137 637 26 HOH HOH . D 4 HOH A 138 638 93 HOH HOH . D 4 HOH A 139 639 167 HOH HOH . D 4 HOH A 140 640 125 HOH HOH . D 4 HOH A 141 641 144 HOH HOH . D 4 HOH A 142 642 194 HOH HOH . D 4 HOH A 143 643 160 HOH HOH . D 4 HOH A 144 644 94 HOH HOH . D 4 HOH A 145 645 39 HOH HOH . D 4 HOH A 146 646 81 HOH HOH . D 4 HOH A 147 647 110 HOH HOH . D 4 HOH A 148 648 32 HOH HOH . D 4 HOH A 149 649 142 HOH HOH . D 4 HOH A 150 650 155 HOH HOH . D 4 HOH A 151 651 119 HOH HOH . D 4 HOH A 152 652 72 HOH HOH . D 4 HOH A 153 653 137 HOH HOH . D 4 HOH A 154 654 91 HOH HOH . D 4 HOH A 155 655 175 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 101 HOH HOH . D 4 HOH A 158 658 25 HOH HOH . D 4 HOH A 159 659 205 HOH HOH . D 4 HOH A 160 660 79 HOH HOH . D 4 HOH A 161 661 143 HOH HOH . D 4 HOH A 162 662 46 HOH HOH . D 4 HOH A 163 663 206 HOH HOH . D 4 HOH A 164 664 124 HOH HOH . D 4 HOH A 165 665 31 HOH HOH . D 4 HOH A 166 666 217 HOH HOH . D 4 HOH A 167 667 134 HOH HOH . D 4 HOH A 168 668 187 HOH HOH . D 4 HOH A 169 669 95 HOH HOH . D 4 HOH A 170 670 185 HOH HOH . D 4 HOH A 171 671 171 HOH HOH . D 4 HOH A 172 672 154 HOH HOH . D 4 HOH A 173 673 66 HOH HOH . D 4 HOH A 174 674 219 HOH HOH . D 4 HOH A 175 675 186 HOH HOH . D 4 HOH A 176 676 212 HOH HOH . D 4 HOH A 177 677 180 HOH HOH . D 4 HOH A 178 678 152 HOH HOH . D 4 HOH A 179 679 200 HOH HOH . D 4 HOH A 180 680 170 HOH HOH . D 4 HOH A 181 681 201 HOH HOH . D 4 HOH A 182 682 192 HOH HOH . D 4 HOH A 183 683 43 HOH HOH . D 4 HOH A 184 684 129 HOH HOH . D 4 HOH A 185 685 176 HOH HOH . D 4 HOH A 186 686 191 HOH HOH . D 4 HOH A 187 687 73 HOH HOH . D 4 HOH A 188 688 131 HOH HOH . D 4 HOH A 189 689 150 HOH HOH . D 4 HOH A 190 690 109 HOH HOH . D 4 HOH A 191 691 195 HOH HOH . D 4 HOH A 192 692 204 HOH HOH . D 4 HOH A 193 693 76 HOH HOH . D 4 HOH A 194 694 181 HOH HOH . D 4 HOH A 195 695 227 HOH HOH . D 4 HOH A 196 696 161 HOH HOH . D 4 HOH A 197 697 100 HOH HOH . D 4 HOH A 198 698 138 HOH HOH . D 4 HOH A 199 699 208 HOH HOH . D 4 HOH A 200 700 70 HOH HOH . D 4 HOH A 201 701 168 HOH HOH . D 4 HOH A 202 702 179 HOH HOH . D 4 HOH A 203 703 120 HOH HOH . D 4 HOH A 204 704 183 HOH HOH . D 4 HOH A 205 705 159 HOH HOH . D 4 HOH A 206 706 199 HOH HOH . D 4 HOH A 207 707 222 HOH HOH . D 4 HOH A 208 708 182 HOH HOH . D 4 HOH A 209 709 60 HOH HOH . D 4 HOH A 210 710 96 HOH HOH . D 4 HOH A 211 711 173 HOH HOH . D 4 HOH A 212 712 68 HOH HOH . D 4 HOH A 213 713 163 HOH HOH . D 4 HOH A 214 714 184 HOH HOH . D 4 HOH A 215 715 177 HOH HOH . D 4 HOH A 216 716 104 HOH HOH . D 4 HOH A 217 717 156 HOH HOH . D 4 HOH A 218 718 145 HOH HOH . D 4 HOH A 219 719 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . C 3 -7.261 0.036 8.078 1 25.15 ? P IMP 402 A 1 HETATM 2 O O1P IMP . . . C 3 -7.092 -1.424 7.755 1 24.25 ? O1P IMP 402 A 1 HETATM 3 O O2P IMP . . . C 3 -8.245 0.198 9.211 1 24.7 ? O2P IMP 402 A 1 HETATM 4 O O3P IMP . . . C 3 -5.85 0.57 8.309 1 26.52 ? O3P IMP 402 A 1 HETATM 5 O O5' IMP . . . C 3 -7.956 0.796 6.865 1 25.84 ? O5' IMP 402 A 1 HETATM 6 C C5' IMP . . . C 3 -7.153 1.282 5.79 1 25.6 ? C5' IMP 402 A 1 HETATM 7 C C4' IMP . . . C 3 -6.596 0.154 4.96 1 27.57 ? C4' IMP 402 A 1 HETATM 8 O O4' IMP . . . C 3 -7.684 -0.491 4.224 1 27.82 ? O4' IMP 402 A 1 HETATM 9 C C3' IMP . . . C 3 -5.607 0.592 3.885 1 30.09 ? C3' IMP 402 A 1 HETATM 10 O O3' IMP . . . C 3 -4.284 0.718 4.4 1 28.18 ? O3' IMP 402 A 1 HETATM 11 C C2' IMP . . . C 3 -5.753 -0.476 2.793 1 29.2 ? C2' IMP 402 A 1 HETATM 12 O O2' IMP . . . C 3 -4.855 -1.556 2.996 1 29.71 ? O2' IMP 402 A 1 HETATM 13 C C1' IMP . . . C 3 -7.21 -0.952 2.972 1 23.62 ? C1' IMP 402 A 1 HETATM 14 N N9 IMP . . . C 3 -8.04 -0.35 1.929 1 25.35 ? N9 IMP 402 A 1 HETATM 15 C C8 IMP . . . C 3 -8.884 0.732 2.039 1 24.45 ? C8 IMP 402 A 1 HETATM 16 N N7 IMP . . . C 3 -9.404 0.947 0.796 1 26.39 ? N7 IMP 402 A 1 HETATM 17 C C5 IMP . . . C 3 -8.884 0.043 -0.074 1 27.13 ? C5 IMP 402 A 1 HETATM 18 C C6 IMP . . . C 3 -9.052 -0.176 -1.446 1 30.86 ? C6 IMP 402 A 1 HETATM 19 O O6 IMP . . . C 3 -9.611 0.67 -2.185 1 31.11 ? O6 IMP 402 A 1 HETATM 20 N N1 IMP . . . C 3 -8.351 -1.234 -2.024 1 25.62 ? N1 IMP 402 A 1 HETATM 21 C C2 IMP . . . C 3 -7.516 -2.046 -1.296 1 26.13 ? C2 IMP 402 A 1 HETATM 22 N N3 IMP . . . C 3 -7.338 -1.799 0.046 1 23.9 ? N3 IMP 402 A 1 HETATM 23 C C4 IMP . . . C 3 -8.02 -0.779 0.636 1 23.71 ? C4 IMP 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #