data_6IJR # _model_server_result.job_id tcnwwhvSdbXReLRah8CVhA _model_server_result.datetime_utc '2024-11-23 12:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ijr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6IJR # _exptl.entry_id 6IJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.753 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IJR _cell.length_a 62.359 _cell.length_b 62.451 _cell.length_c 162.161 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G 1 1 C,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 91 A CYS 285 1_555 E CBA A9C . A A9C 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? covale ? covale2 C SG CYS 91 C CYS 285 1_555 F CBA A9C . C A9C 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? # _chem_comp.formula 'C34 H45 N5 O3' _chem_comp.formula_weight 571.753 _chem_comp.id A9C _chem_comp.mon_nstd_flag . _chem_comp.name N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAQ CAS A9C sing 1 n n CAQ CAR A9C sing 2 n n CAS CBM A9C sing 3 n n CAR CBL A9C sing 4 n n CBL CBM A9C sing 5 n n CBL NBC A9C sing 6 n n CBM OBD A9C sing 7 n n NBC CBF A9C sing 8 n n OBD CAY A9C sing 9 n n CAY CBI A9C sing 10 n n CBF OAG A9C doub 11 n n CBF CBK A9C sing 12 n n NAE CAH A9C trip 13 n n CAH CBK A9C sing 14 n n CAK CBI A9C doub 15 n y CAK CAI A9C sing 16 n y CBI CAP A9C sing 17 n y CBK CBA A9C doub 18 e n CAI CAJ A9C doub 19 n y CAP CBG A9C doub 20 n y CBA CBP A9C sing 21 n n CAD CBP A9C sing 22 n n CAJ CBG A9C sing 23 n y CBG CAX A9C sing 24 n n CBP CAB A9C sing 25 n n CBP CAC A9C sing 26 n n CAX NBB A9C sing 27 n n NBB CBE A9C sing 28 n n CBE OAF A9C doub 29 n n CBE CBJ A9C sing 30 n n CAN CBJ A9C doub 31 n y CAN CAL A9C sing 32 n y CBJ CAO A9C sing 33 n y CAL CBH A9C doub 34 n y CAO CAM A9C doub 35 n y CBH CAM A9C sing 36 n y CBH CAZ A9C sing 37 n n CAZ NBO A9C sing 38 n n NBO CAW A9C sing 39 n n NBO CAV A9C sing 40 n n CAW CAU A9C sing 41 n n CAV CAT A9C sing 42 n n CAU NBN A9C sing 43 n n CAT NBN A9C sing 44 n n NBN CAA A9C sing 45 n n CAV H1 A9C sing 46 n n CAV H2 A9C sing 47 n n CAT H3 A9C sing 48 n n CAT H4 A9C sing 49 n n CAA H6 A9C sing 50 n n CAA H7 A9C sing 51 n n CAA H8 A9C sing 52 n n CAU H9 A9C sing 53 n n CAU H10 A9C sing 54 n n CAW H11 A9C sing 55 n n CAW H12 A9C sing 56 n n CAZ H14 A9C sing 57 n n CAZ H15 A9C sing 58 n n CAM H16 A9C sing 59 n n CAO H17 A9C sing 60 n n CAL H18 A9C sing 61 n n CAN H19 A9C sing 62 n n NBB H20 A9C sing 63 n n CAX H21 A9C sing 64 n n CAX H22 A9C sing 65 n n CAP H23 A9C sing 66 n n CAJ H24 A9C sing 67 n n CAI H25 A9C sing 68 n n CAK H26 A9C sing 69 n n CAY H27 A9C sing 70 n n CAY H28 A9C sing 71 n n CBM H29 A9C sing 72 n n CAS H30 A9C sing 73 n n CAS H31 A9C sing 74 n n CAQ H32 A9C sing 75 n n CAQ H33 A9C sing 76 n n CAR H34 A9C sing 77 n n CAR H35 A9C sing 78 n n CBL H36 A9C sing 79 n n NBC H37 A9C sing 80 n n CBA H39 A9C sing 81 n n CAC H41 A9C sing 82 n n CAC H42 A9C sing 83 n n CAC H43 A9C sing 84 n n CAD H44 A9C sing 85 n n CAD H45 A9C sing 86 n n CAD H46 A9C sing 87 n n CAB H47 A9C sing 88 n n CAB H48 A9C sing 89 n n CAB H49 A9C sing 90 n n # _atom_sites.entry_id 6IJR _atom_sites.fract_transf_matrix[1][1] 0.016036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A9C A 1 501 1 A9C SB5 . F 3 A9C C 1 501 1 A9C SB5 . G 4 HOH A 1 601 501 HOH HOH . G 4 HOH A 2 602 502 HOH HOH . G 4 HOH A 3 603 512 HOH HOH . G 4 HOH A 4 604 510 HOH HOH . G 4 HOH A 5 605 509 HOH HOH . G 4 HOH A 6 606 511 HOH HOH . G 4 HOH A 7 607 506 HOH HOH . G 4 HOH A 8 608 508 HOH HOH . G 4 HOH A 9 609 510 HOH HOH . G 4 HOH A 10 610 507 HOH HOH . G 4 HOH A 11 611 503 HOH HOH . G 4 HOH A 12 612 509 HOH HOH . G 4 HOH A 13 613 504 HOH HOH . G 4 HOH A 14 614 505 HOH HOH . G 4 HOH A 15 615 513 HOH HOH . H 4 HOH C 1 601 502 HOH HOH . H 4 HOH C 2 602 511 HOH HOH . H 4 HOH C 3 603 506 HOH HOH . H 4 HOH C 4 604 508 HOH HOH . H 4 HOH C 5 605 503 HOH HOH . H 4 HOH C 6 606 501 HOH HOH . H 4 HOH C 7 607 507 HOH HOH . H 4 HOH C 8 608 504 HOH HOH . H 4 HOH C 9 609 505 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV A9C . . . E 3 -11.754 -25.647 8.097 1 80.25 ? CAV A9C 501 A 1 HETATM 2 C CAT A9C . . . E 3 -12.388 -26.416 9.26 1 84.47 ? CAT A9C 501 A 1 HETATM 3 N NBN A9C . . . E 3 -13.57 -25.781 9.837 1 84.84 ? NBN A9C 501 A 1 HETATM 4 C CAA A9C . . . E 3 -13.395 -24.446 10.424 1 90.13 ? CAA A9C 501 A 1 HETATM 5 C CAU A9C . . . E 3 -14.517 -25.653 8.682 1 80.72 ? CAU A9C 501 A 1 HETATM 6 C CAW A9C . . . E 3 -13.944 -24.97 7.425 1 81.35 ? CAW A9C 501 A 1 HETATM 7 N NBO A9C . . . E 3 -12.71 -25.638 6.975 1 80.25 ? NBO A9C 501 A 1 HETATM 8 C CAZ A9C . . . E 3 -12.137 -24.977 5.77 1 77.89 ? CAZ A9C 501 A 1 HETATM 9 C CBH A9C . . . E 3 -11.141 -25.916 5.117 1 76.93 ? CBH A9C 501 A 1 HETATM 10 C CAM A9C . . . E 3 -9.757 -25.759 5.279 1 73.46 ? CAM A9C 501 A 1 HETATM 11 C CAO A9C . . . E 3 -8.878 -26.665 4.683 1 73.4 ? CAO A9C 501 A 1 HETATM 12 C CAL A9C . . . E 3 -11.627 -26.985 4.368 1 80.11 ? CAL A9C 501 A 1 HETATM 13 C CAN A9C . . . E 3 -10.741 -27.888 3.787 1 76.75 ? CAN A9C 501 A 1 HETATM 14 C CBJ A9C . . . E 3 -9.371 -27.723 3.913 1 74.68 ? CBJ A9C 501 A 1 HETATM 15 C CBE A9C . . . E 3 -8.46 -28.74 3.303 1 77.53 ? CBE A9C 501 A 1 HETATM 16 O OAF A9C . . . E 3 -7.42 -28.961 3.9 1 88.2 ? OAF A9C 501 A 1 HETATM 17 N NBB A9C . . . E 3 -8.792 -29.439 2.215 1 77.88 ? NBB A9C 501 A 1 HETATM 18 C CAX A9C . . . E 3 -7.934 -30.463 1.648 1 72.21 ? CAX A9C 501 A 1 HETATM 19 C CBG A9C . . . E 3 -7.089 -29.928 0.525 1 72.18 ? CBG A9C 501 A 1 HETATM 20 C CAP A9C . . . E 3 -7.676 -29.155 -0.484 1 69.4 ? CAP A9C 501 A 1 HETATM 21 C CAJ A9C . . . E 3 -5.726 -30.237 0.493 1 69.62 ? CAJ A9C 501 A 1 HETATM 22 C CAI A9C . . . E 3 -4.947 -29.759 -0.557 1 73.2 ? CAI A9C 501 A 1 HETATM 23 C CAK A9C . . . E 3 -5.526 -28.98 -1.565 1 71.19 ? CAK A9C 501 A 1 HETATM 24 C CBI A9C . . . E 3 -6.887 -28.68 -1.53 1 70.91 ? CBI A9C 501 A 1 HETATM 25 C CAY A9C . . . E 3 -7.49 -27.832 -2.625 1 74.89 ? CAY A9C 501 A 1 HETATM 26 O OBD A9C . . . E 3 -8.731 -28.365 -3.124 1 76.97 ? OBD A9C 501 A 1 HETATM 27 C CBM A9C . . . E 3 -9.375 -27.485 -4.051 1 75.62 ? CBM A9C 501 A 1 HETATM 28 C CAS A9C . . . E 3 -8.746 -27.652 -5.434 1 71.72 ? CAS A9C 501 A 1 HETATM 29 C CAQ A9C . . . E 3 -9.653 -28.567 -6.245 1 75.21 ? CAQ A9C 501 A 1 HETATM 30 C CAR A9C . . . E 3 -10.916 -28.783 -5.423 1 80.7 ? CAR A9C 501 A 1 HETATM 31 C CBL A9C . . . E 3 -10.865 -27.715 -4.333 1 81.9 ? CBL A9C 501 A 1 HETATM 32 N NBC A9C . . . E 3 -11.861 -27.977 -3.294 1 84.07 ? NBC A9C 501 A 1 HETATM 33 C CBF A9C . . . E 3 -11.921 -29.011 -2.446 1 90.15 ? CBF A9C 501 A 1 HETATM 34 O OAG A9C . . . E 3 -11.124 -29.926 -2.394 1 100.19 ? OAG A9C 501 A 1 HETATM 35 C CBK A9C . . . E 3 -13.091 -29.111 -1.52 1 94.75 ? CBK A9C 501 A 1 HETATM 36 C CAH A9C . . . E 3 -14.163 -28.194 -1.91 1 109.99 ? CAH A9C 501 A 1 HETATM 37 N NAE A9C . . . E 3 -15.042 -27.527 -2.249 1 125.45 ? NAE A9C 501 A 1 HETATM 38 C CBA A9C . . . E 3 -12.748 -29.127 -0.015 1 91.78 ? CBA A9C 501 A 1 HETATM 39 C CBP A9C . . . E 3 -13.947 -29.573 0.87 1 92.45 ? CBP A9C 501 A 1 HETATM 40 C CAC A9C . . . E 3 -13.419 -29.892 2.289 1 99.53 ? CAC A9C 501 A 1 HETATM 41 C CAD A9C . . . E 3 -14.676 -30.834 0.356 1 91.63 ? CAD A9C 501 A 1 HETATM 42 C CAB A9C . . . E 3 -14.985 -28.447 1 1 84.68 ? CAB A9C 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #