data_6IJR
#
_model_server_result.job_id            7cbhbHCEnKaHk232mRnP-w 
_model_server_result.datetime_utc      '2024-11-23 12:13:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ijr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6IJR 
#
_exptl.entry_id    6IJR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              571.753 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IJR 
_cell.length_a            62.359 
_cell.length_b            62.451 
_cell.length_c            162.161 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IJR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G 1 1 
C,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 91 A CYS 285 1_555 E CBA A9C . A A9C 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
covale ? covale2 C SG CYS 91 C CYS 285 1_555 F CBA A9C . C A9C 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
#
_chem_comp.formula           'C34 H45 N5 O3' 
_chem_comp.formula_weight    571.753 
_chem_comp.id                A9C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAQ CAS A9C sing 1 n n 
CAQ CAR A9C sing 2 n n 
CAS CBM A9C sing 3 n n 
CAR CBL A9C sing 4 n n 
CBL CBM A9C sing 5 n n 
CBL NBC A9C sing 6 n n 
CBM OBD A9C sing 7 n n 
NBC CBF A9C sing 8 n n 
OBD CAY A9C sing 9 n n 
CAY CBI A9C sing 10 n n 
CBF OAG A9C doub 11 n n 
CBF CBK A9C sing 12 n n 
NAE CAH A9C trip 13 n n 
CAH CBK A9C sing 14 n n 
CAK CBI A9C doub 15 n y 
CAK CAI A9C sing 16 n y 
CBI CAP A9C sing 17 n y 
CBK CBA A9C doub 18 e n 
CAI CAJ A9C doub 19 n y 
CAP CBG A9C doub 20 n y 
CBA CBP A9C sing 21 n n 
CAD CBP A9C sing 22 n n 
CAJ CBG A9C sing 23 n y 
CBG CAX A9C sing 24 n n 
CBP CAB A9C sing 25 n n 
CBP CAC A9C sing 26 n n 
CAX NBB A9C sing 27 n n 
NBB CBE A9C sing 28 n n 
CBE OAF A9C doub 29 n n 
CBE CBJ A9C sing 30 n n 
CAN CBJ A9C doub 31 n y 
CAN CAL A9C sing 32 n y 
CBJ CAO A9C sing 33 n y 
CAL CBH A9C doub 34 n y 
CAO CAM A9C doub 35 n y 
CBH CAM A9C sing 36 n y 
CBH CAZ A9C sing 37 n n 
CAZ NBO A9C sing 38 n n 
NBO CAW A9C sing 39 n n 
NBO CAV A9C sing 40 n n 
CAW CAU A9C sing 41 n n 
CAV CAT A9C sing 42 n n 
CAU NBN A9C sing 43 n n 
CAT NBN A9C sing 44 n n 
NBN CAA A9C sing 45 n n 
CAV H1 A9C sing 46 n n 
CAV H2 A9C sing 47 n n 
CAT H3 A9C sing 48 n n 
CAT H4 A9C sing 49 n n 
CAA H6 A9C sing 50 n n 
CAA H7 A9C sing 51 n n 
CAA H8 A9C sing 52 n n 
CAU H9 A9C sing 53 n n 
CAU H10 A9C sing 54 n n 
CAW H11 A9C sing 55 n n 
CAW H12 A9C sing 56 n n 
CAZ H14 A9C sing 57 n n 
CAZ H15 A9C sing 58 n n 
CAM H16 A9C sing 59 n n 
CAO H17 A9C sing 60 n n 
CAL H18 A9C sing 61 n n 
CAN H19 A9C sing 62 n n 
NBB H20 A9C sing 63 n n 
CAX H21 A9C sing 64 n n 
CAX H22 A9C sing 65 n n 
CAP H23 A9C sing 66 n n 
CAJ H24 A9C sing 67 n n 
CAI H25 A9C sing 68 n n 
CAK H26 A9C sing 69 n n 
CAY H27 A9C sing 70 n n 
CAY H28 A9C sing 71 n n 
CBM H29 A9C sing 72 n n 
CAS H30 A9C sing 73 n n 
CAS H31 A9C sing 74 n n 
CAQ H32 A9C sing 75 n n 
CAQ H33 A9C sing 76 n n 
CAR H34 A9C sing 77 n n 
CAR H35 A9C sing 78 n n 
CBL H36 A9C sing 79 n n 
NBC H37 A9C sing 80 n n 
CBA H39 A9C sing 81 n n 
CAC H41 A9C sing 82 n n 
CAC H42 A9C sing 83 n n 
CAC H43 A9C sing 84 n n 
CAD H44 A9C sing 85 n n 
CAD H45 A9C sing 86 n n 
CAD H46 A9C sing 87 n n 
CAB H47 A9C sing 88 n n 
CAB H48 A9C sing 89 n n 
CAB H49 A9C sing 90 n n 
#
_atom_sites.entry_id                     6IJR 
_atom_sites.fract_transf_matrix[1][1]    0.016036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 A9C A 1 501 1 A9C SB5 . 
F 3 A9C C 1 501 1 A9C SB5 . 
G 4 HOH A 1 601 501 HOH HOH . 
G 4 HOH A 2 602 502 HOH HOH . 
G 4 HOH A 3 603 512 HOH HOH . 
G 4 HOH A 4 604 510 HOH HOH . 
G 4 HOH A 5 605 509 HOH HOH . 
G 4 HOH A 6 606 511 HOH HOH . 
G 4 HOH A 7 607 506 HOH HOH . 
G 4 HOH A 8 608 508 HOH HOH . 
G 4 HOH A 9 609 510 HOH HOH . 
G 4 HOH A 10 610 507 HOH HOH . 
G 4 HOH A 11 611 503 HOH HOH . 
G 4 HOH A 12 612 509 HOH HOH . 
G 4 HOH A 13 613 504 HOH HOH . 
G 4 HOH A 14 614 505 HOH HOH . 
G 4 HOH A 15 615 513 HOH HOH . 
H 4 HOH C 1 601 502 HOH HOH . 
H 4 HOH C 2 602 511 HOH HOH . 
H 4 HOH C 3 603 506 HOH HOH . 
H 4 HOH C 4 604 508 HOH HOH . 
H 4 HOH C 5 605 503 HOH HOH . 
H 4 HOH C 6 606 501 HOH HOH . 
H 4 HOH C 7 607 507 HOH HOH . 
H 4 HOH C 8 608 504 HOH HOH . 
H 4 HOH C 9 609 505 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAV A9C . . . F 3 20.949 -3.64 -32.384 1 80.34 ? CAV A9C 501 C 1 
HETATM 2 C CAT A9C . . . F 3 20.162 -2.815 -31.358 1 86.67 ? CAT A9C 501 C 1 
HETATM 3 N NBN A9C . . . F 3 20.911 -1.698 -30.773 1 85.86 ? NBN A9C 501 C 1 
HETATM 4 C CAA A9C . . . F 3 22.117 -2.124 -30.054 1 90.05 ? CAA A9C 501 C 1 
HETATM 5 C CAU A9C . . . F 3 21.31 -0.849 -31.935 1 81.74 ? CAU A9C 501 C 1 
HETATM 6 C CAW A9C . . . F 3 21.98 -1.59 -33.101 1 82.31 ? CAW A9C 501 C 1 
HETATM 7 N NBO A9C . . . F 3 21.189 -2.756 -33.54 1 84.02 ? NBO A9C 501 C 1 
HETATM 8 C CAZ A9C . . . F 3 21.88 -3.471 -34.642 1 79.61 ? CAZ A9C 501 C 1 
HETATM 9 C CBH A9C . . . F 3 20.936 -4.424 -35.344 1 76.07 ? CBH A9C 501 C 1 
HETATM 10 C CAM A9C . . . F 3 21.11 -5.804 -35.232 1 71.94 ? CAM A9C 501 C 1 
HETATM 11 C CAO A9C . . . F 3 20.228 -6.669 -35.877 1 72.88 ? CAO A9C 501 C 1 
HETATM 12 C CAL A9C . . . F 3 19.872 -3.919 -36.09 1 77.68 ? CAL A9C 501 C 1 
HETATM 13 C CAN A9C . . . F 3 18.989 -4.786 -36.726 1 76.94 ? CAN A9C 501 C 1 
HETATM 14 C CBJ A9C . . . F 3 19.174 -6.168 -36.647 1 75.85 ? CBJ A9C 501 C 1 
HETATM 15 C CBE A9C . . . F 3 18.207 -7.116 -37.3 1 77.83 ? CBE A9C 501 C 1 
HETATM 16 O OAF A9C . . . F 3 18.119 -8.238 -36.818 1 83.86 ? OAF A9C 501 C 1 
HETATM 17 N NBB A9C . . . F 3 17.436 -6.755 -38.33 1 81.75 ? NBB A9C 501 C 1 
HETATM 18 C CAX A9C . . . F 3 16.455 -7.646 -38.925 1 77.22 ? CAX A9C 501 C 1 
HETATM 19 C CBG A9C . . . F 3 16.983 -8.487 -40.051 1 76.31 ? CBG A9C 501 C 1 
HETATM 20 C CAP A9C . . . F 3 17.727 -7.902 -41.09 1 73.21 ? CAP A9C 501 C 1 
HETATM 21 C CAJ A9C . . . F 3 16.677 -9.851 -40.052 1 75.36 ? CAJ A9C 501 C 1 
HETATM 22 C CAI A9C . . . F 3 17.133 -10.654 -41.099 1 79.38 ? CAI A9C 501 C 1 
HETATM 23 C CAK A9C . . . F 3 17.888 -10.081 -42.136 1 80.86 ? CAK A9C 501 C 1 
HETATM 24 C CBI A9C . . . F 3 18.183 -8.708 -42.135 1 74.85 ? CBI A9C 501 C 1 
HETATM 25 C CAY A9C . . . F 3 18.992 -8.132 -43.266 1 74.08 ? CAY A9C 501 C 1 
HETATM 26 O OBD A9C . . . F 3 18.466 -6.871 -43.709 1 78.16 ? OBD A9C 501 C 1 
HETATM 27 C CBM A9C . . . F 3 19.313 -6.244 -44.677 1 79 ? CBM A9C 501 C 1 
HETATM 28 C CAS A9C . . . F 3 19.122 -6.883 -46.06 1 76.91 ? CAS A9C 501 C 1 
HETATM 29 C CAQ A9C . . . F 3 18.203 -5.975 -46.877 1 79.66 ? CAQ A9C 501 C 1 
HETATM 30 C CAR A9C . . . F 3 17.926 -4.758 -46.014 1 82.84 ? CAR A9C 501 C 1 
HETATM 31 C CBL A9C . . . F 3 19.044 -4.769 -44.98 1 83.94 ? CBL A9C 501 C 1 
HETATM 32 N NBC A9C . . . F 3 18.827 -3.75 -43.958 1 83.51 ? NBC A9C 501 C 1 
HETATM 33 C CBF A9C . . . F 3 17.804 -3.622 -43.105 1 87.49 ? CBF A9C 501 C 1 
HETATM 34 O OAG A9C . . . F 3 16.87 -4.389 -43.029 1 99.26 ? OAG A9C 501 C 1 
HETATM 35 C CBK A9C . . . F 3 17.767 -2.435 -42.191 1 94.92 ? CBK A9C 501 C 1 
HETATM 36 C CAH A9C . . . F 3 18.832 -1.491 -42.515 1 112.16 ? CAH A9C 501 C 1 
HETATM 37 N NAE A9C . . . F 3 19.688 -0.811 -42.846 1 125.85 ? NAE A9C 501 C 1 
HETATM 38 C CBA A9C . . . F 3 17.694 -2.78 -40.684 1 92.31 ? CBA A9C 501 C 1 
HETATM 39 C CBP A9C . . . F 3 17.177 -1.585 -39.82 1 92.83 ? CBP A9C 501 C 1 
HETATM 40 C CAC A9C . . . F 3 16.804 -2.125 -38.427 1 98.43 ? CAC A9C 501 C 1 
HETATM 41 C CAD A9C . . . F 3 15.925 -0.882 -40.389 1 94.2 ? CAD A9C 501 C 1 
HETATM 42 C CAB A9C . . . F 3 18.255 -0.509 -39.636 1 87.64 ? CAB A9C 501 C 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           42 
#