data_6IK6 # _model_server_result.job_id LQ9FhcDlOzkHIPnaldj3jA _model_server_result.datetime_utc '2024-11-09 02:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ik6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 6IK6 # _exptl.entry_id 6IK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IK6 _cell.length_a 94.032 _cell.length_b 110.73 _cell.length_c 162.141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,K 1 1 B,D,F,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 GAL GAL C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 801 NAG 2 n C NAG 2 C 2 NAG A 802 NAG 2 n D NAG 1 D 1 NAG B 802 NAG 2 n D NAG 2 D 2 NAG B 803 NAG 3 n E GAL 1 E 1 GAL A 803 B2G 3 n E GAL 2 E 2 GAL A 803 B2G 3 n F GAL 1 F 1 GAL B 804 B2G 3 n F GAL 2 F 2 GAL B 804 B2G # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 212 A CYS 229 1_555 A SG CYS 217 A CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? disulf ? disulf2 A SG CYS 353 A CYS 370 1_555 A SG CYS 388 A CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 647 A CYS 664 1_555 A SG CYS 665 A CYS 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 650 A CYS 667 1_555 A SG CYS 661 A CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 212 B CYS 229 1_555 B SG CYS 217 B CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 353 B CYS 370 1_555 B SG CYS 388 B CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 647 B CYS 664 1_555 B SG CYS 665 B CYS 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf8 B SG CYS 650 B CYS 667 1_555 B SG CYS 661 B CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? covale ? covale1 A ND2 ASN 442 A ASN 459 1_555 H C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B NZ LYS 200 B LYS 217 1_555 F O2 GAL . F GAL 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale3 B ND2 ASN 265 B ASN 282 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B ND2 ASN 442 B ASN 459 1_555 I C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale7 E O4 GAL . E GAL 1 1_555 E C1 GAL . E GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 sing covale ? covale8 F O4 GAL . F GAL 1 1_555 F C1 GAL . F GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6IK6 _atom_sites.fract_transf_matrix[1][1] 0.010635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CL A 1 804 805 CL CL . H 5 NAG A 1 805 804 NAG NAG . I 5 NAG B 1 801 801 NAG NAG . J 4 CL B 1 805 805 CL CL . K 6 HOH A 1 901 901 HOH HOH . K 6 HOH A 2 902 914 HOH HOH . K 6 HOH A 3 903 902 HOH HOH . K 6 HOH A 4 904 903 HOH HOH . K 6 HOH A 5 905 904 HOH HOH . K 6 HOH A 6 906 907 HOH HOH . K 6 HOH A 7 907 905 HOH HOH . K 6 HOH A 8 908 906 HOH HOH . K 6 HOH A 9 909 909 HOH HOH . K 6 HOH A 10 910 908 HOH HOH . K 6 HOH A 11 911 911 HOH HOH . K 6 HOH A 12 912 913 HOH HOH . K 6 HOH A 13 913 917 HOH HOH . K 6 HOH A 14 914 912 HOH HOH . K 6 HOH A 15 915 910 HOH HOH . K 6 HOH A 16 916 915 HOH HOH . K 6 HOH A 17 917 916 HOH HOH . K 6 HOH A 18 918 919 HOH HOH . K 6 HOH A 19 919 918 HOH HOH . K 6 HOH A 20 920 925 HOH HOH . K 6 HOH A 21 921 920 HOH HOH . K 6 HOH A 22 922 926 HOH HOH . K 6 HOH A 23 923 921 HOH HOH . K 6 HOH A 24 924 928 HOH HOH . K 6 HOH A 25 925 929 HOH HOH . K 6 HOH A 26 926 927 HOH HOH . K 6 HOH A 27 927 952 HOH HOH . K 6 HOH A 28 928 931 HOH HOH . K 6 HOH A 29 929 930 HOH HOH . K 6 HOH A 30 930 932 HOH HOH . K 6 HOH A 31 931 924 HOH HOH . K 6 HOH A 32 932 922 HOH HOH . K 6 HOH A 33 933 935 HOH HOH . K 6 HOH A 34 934 933 HOH HOH . K 6 HOH A 35 935 934 HOH HOH . K 6 HOH A 36 936 938 HOH HOH . K 6 HOH A 37 937 936 HOH HOH . K 6 HOH A 38 938 939 HOH HOH . K 6 HOH A 39 939 940 HOH HOH . K 6 HOH A 40 940 941 HOH HOH . K 6 HOH A 41 941 937 HOH HOH . K 6 HOH A 42 942 942 HOH HOH . K 6 HOH A 43 943 944 HOH HOH . K 6 HOH A 44 944 947 HOH HOH . K 6 HOH A 45 945 943 HOH HOH . K 6 HOH A 46 946 945 HOH HOH . K 6 HOH A 47 947 948 HOH HOH . K 6 HOH A 48 948 949 HOH HOH . K 6 HOH A 49 949 950 HOH HOH . K 6 HOH A 50 950 955 HOH HOH . K 6 HOH A 51 951 951 HOH HOH . K 6 HOH A 52 952 953 HOH HOH . K 6 HOH A 53 953 954 HOH HOH . K 6 HOH A 54 954 956 HOH HOH . K 6 HOH A 55 955 923 HOH HOH . K 6 HOH A 56 956 946 HOH HOH . K 6 HOH A 57 957 958 HOH HOH . K 6 HOH A 58 958 957 HOH HOH . K 6 HOH A 59 959 959 HOH HOH . K 6 HOH A 60 960 962 HOH HOH . K 6 HOH A 61 961 961 HOH HOH . K 6 HOH A 62 962 960 HOH HOH . K 6 HOH A 63 963 963 HOH HOH . K 6 HOH A 64 964 964 HOH HOH . L 6 HOH B 1 901 901 HOH HOH . L 6 HOH B 2 902 902 HOH HOH . L 6 HOH B 3 903 903 HOH HOH . L 6 HOH B 4 904 904 HOH HOH . L 6 HOH B 5 905 907 HOH HOH . L 6 HOH B 6 906 909 HOH HOH . L 6 HOH B 7 907 908 HOH HOH . L 6 HOH B 8 908 906 HOH HOH . L 6 HOH B 9 909 905 HOH HOH . L 6 HOH B 10 910 910 HOH HOH . L 6 HOH B 11 911 911 HOH HOH . L 6 HOH B 12 912 924 HOH HOH . L 6 HOH B 13 913 912 HOH HOH . L 6 HOH B 14 914 913 HOH HOH . L 6 HOH B 15 915 914 HOH HOH . L 6 HOH B 16 916 916 HOH HOH . L 6 HOH B 17 917 920 HOH HOH . L 6 HOH B 18 918 917 HOH HOH . L 6 HOH B 19 919 922 HOH HOH . L 6 HOH B 20 920 919 HOH HOH . L 6 HOH B 21 921 915 HOH HOH . L 6 HOH B 22 922 921 HOH HOH . L 6 HOH B 23 923 923 HOH HOH . L 6 HOH B 24 924 918 HOH HOH . L 6 HOH B 25 925 925 HOH HOH . L 6 HOH B 26 926 926 HOH HOH . L 6 HOH B 27 927 927 HOH HOH . L 6 HOH B 28 928 928 HOH HOH . L 6 HOH B 29 929 929 HOH HOH . L 6 HOH B 30 930 930 HOH HOH . L 6 HOH B 31 931 931 HOH HOH . L 6 HOH B 32 932 932 HOH HOH . L 6 HOH B 33 933 933 HOH HOH . L 6 HOH B 34 934 934 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 5 9.289 -37.512 -70.537 1 87.08 ? C1 NAG 801 B 1 HETATM 2 C C2 NAG . . . I 5 7.787 -37.777 -70.635 1 87.15 ? C2 NAG 801 B 1 HETATM 3 C C3 NAG . . . I 5 7.511 -38.835 -71.701 1 88.21 ? C3 NAG 801 B 1 HETATM 4 C C4 NAG . . . I 5 8.173 -38.455 -73.022 1 93.42 ? C4 NAG 801 B 1 HETATM 5 C C5 NAG . . . I 5 9.652 -38.125 -72.818 1 93.93 ? C5 NAG 801 B 1 HETATM 6 C C6 NAG . . . I 5 10.336 -37.627 -74.076 1 95.67 ? C6 NAG 801 B 1 HETATM 7 C C7 NAG . . . I 5 6.687 -37.363 -68.452 1 80.33 ? C7 NAG 801 B 1 HETATM 8 C C8 NAG . . . I 5 6.618 -35.918 -68.836 1 77.98 ? C8 NAG 801 B 1 HETATM 9 N N2 NAG . . . I 5 7.247 -38.192 -69.347 1 86.32 ? N2 NAG 801 B 1 HETATM 10 O O3 NAG . . . I 5 6.104 -38.962 -71.877 1 90.45 ? O3 NAG 801 B 1 HETATM 11 O O4 NAG . . . I 5 8.038 -39.513 -73.967 1 99.52 ? O4 NAG 801 B 1 HETATM 12 O O5 NAG . . . I 5 9.791 -37.1 -71.822 1 92.37 ? O5 NAG 801 B 1 HETATM 13 O O6 NAG . . . I 5 10.298 -36.211 -74.193 1 92.82 ? O6 NAG 801 B 1 HETATM 14 O O7 NAG . . . I 5 6.251 -37.767 -67.379 1 75.56 ? O7 NAG 801 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #