data_6ILH # _model_server_result.job_id rqi24S2yyM682Iie8KIqaw _model_server_result.datetime_utc '2024-11-24 18:50:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ilh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6ILH # _exptl.entry_id 6ILH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.492 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ILH _cell.length_a 152.18 _cell.length_b 152.18 _cell.length_c 106.32 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ILH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H26 N8 O7 S' _chem_comp.formula_weight 474.492 _chem_comp.id KAA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NZ CE KAA sing 173 n n NZ HNZ1 KAA sing 174 n n NZ HNZ2 KAA sing 175 n n CE CD KAA sing 176 n n CE HE1 KAA sing 177 n n CE HE2 KAA sing 178 n n CD CG KAA sing 179 n n CD HD1 KAA sing 180 n n CD HD2 KAA sing 181 n n CG CB KAA sing 182 n n CG HG1 KAA sing 183 n n CG HG2 KAA sing 184 n n CB CA KAA sing 185 n n CB HB1 KAA sing 186 n n CB HB2 KAA sing 187 n n CA C KAA sing 188 n n CA N KAA sing 189 n n CA HA KAA sing 190 n n N HN1 KAA sing 191 n n N HN2 KAA sing 192 n n C O KAA doub 193 n n C N8 KAA sing 194 n n N8 S1 KAA sing 195 n n N8 HN8 KAA sing 196 n n S1 O1S KAA doub 197 n n S1 O5' KAA sing 198 n n S1 O2S KAA doub 199 n n O5' C5' KAA sing 200 n n C5' C4' KAA sing 201 n n C5' "H5'1" KAA sing 202 n n C5' "H5'2" KAA sing 203 n n C4' O4' KAA sing 204 n n C4' C3' KAA sing 205 n n C4' H4' KAA sing 206 n n O4' C1' KAA sing 207 n n C3' C2' KAA sing 208 n n C3' O3' KAA sing 209 n n C3' H3' KAA sing 210 n n O3' HO3' KAA sing 211 n n C2' C1' KAA sing 212 n n C2' O2' KAA sing 213 n n C2' H2' KAA sing 214 n n O2' HO2' KAA sing 215 n n C1' N9 KAA sing 216 n n C1' H1' KAA sing 217 n n N9 C4 KAA sing 218 n y N9 C8 KAA sing 219 n y C8 N7 KAA doub 220 n y C8 H8 KAA sing 221 n n N7 C5 KAA sing 222 n y C5 C6 KAA sing 223 n y C5 C4 KAA doub 224 n y C4 N3 KAA sing 225 n y N3 C2 KAA doub 226 n y C2 N1 KAA sing 227 n y C2 H2 KAA sing 228 n n N1 C6 KAA doub 229 n y C6 N6 KAA sing 230 n n N6 HN61 KAA sing 231 n n N6 HN62 KAA sing 232 n n # _atom_sites.entry_id 6ILH _atom_sites.fract_transf_matrix[1][1] 0.006571 _atom_sites.fract_transf_matrix[1][2] 0.003794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KAA A 1 601 2 KAA KAA . D 2 KAA B 1 601 1 KAA KAA . E 3 HOH A 1 701 53 HOH HOH . E 3 HOH A 2 702 37 HOH HOH . E 3 HOH A 3 703 8 HOH HOH . E 3 HOH A 4 704 7 HOH HOH . E 3 HOH A 5 705 2 HOH HOH . E 3 HOH A 6 706 14 HOH HOH . E 3 HOH A 7 707 10 HOH HOH . E 3 HOH A 8 708 51 HOH HOH . E 3 HOH A 9 709 31 HOH HOH . E 3 HOH A 10 710 48 HOH HOH . E 3 HOH A 11 711 45 HOH HOH . E 3 HOH A 12 712 4 HOH HOH . E 3 HOH A 13 713 55 HOH HOH . E 3 HOH A 14 714 19 HOH HOH . E 3 HOH A 15 715 25 HOH HOH . E 3 HOH A 16 716 16 HOH HOH . E 3 HOH A 17 717 3 HOH HOH . E 3 HOH A 18 718 39 HOH HOH . E 3 HOH A 19 719 27 HOH HOH . E 3 HOH A 20 720 12 HOH HOH . E 3 HOH A 21 721 33 HOH HOH . E 3 HOH A 22 722 59 HOH HOH . E 3 HOH A 23 723 50 HOH HOH . E 3 HOH A 24 724 20 HOH HOH . E 3 HOH A 25 725 46 HOH HOH . E 3 HOH A 26 726 42 HOH HOH . E 3 HOH A 27 727 22 HOH HOH . E 3 HOH A 28 728 24 HOH HOH . E 3 HOH A 29 729 29 HOH HOH . E 3 HOH A 30 730 18 HOH HOH . E 3 HOH A 31 731 30 HOH HOH . E 3 HOH A 32 732 5 HOH HOH . E 3 HOH A 33 733 62 HOH HOH . E 3 HOH A 34 734 61 HOH HOH . E 3 HOH A 35 735 58 HOH HOH . E 3 HOH A 36 736 11 HOH HOH . E 3 HOH A 37 737 60 HOH HOH . E 3 HOH A 38 738 17 HOH HOH . F 3 HOH B 1 701 44 HOH HOH . F 3 HOH B 2 702 6 HOH HOH . F 3 HOH B 3 703 28 HOH HOH . F 3 HOH B 4 704 1 HOH HOH . F 3 HOH B 5 705 23 HOH HOH . F 3 HOH B 6 706 38 HOH HOH . F 3 HOH B 7 707 9 HOH HOH . F 3 HOH B 8 708 34 HOH HOH . F 3 HOH B 9 709 43 HOH HOH . F 3 HOH B 10 710 21 HOH HOH . F 3 HOH B 11 711 13 HOH HOH . F 3 HOH B 12 712 32 HOH HOH . F 3 HOH B 13 713 15 HOH HOH . F 3 HOH B 14 714 26 HOH HOH . F 3 HOH B 15 715 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NZ KAA . . . C 2 -56.79 -22.077 -2.546 1 45.62 ? NZ KAA 601 A 1 HETATM 2 C CE KAA . . . C 2 -58.213 -22.221 -2.226 1 40.86 ? CE KAA 601 A 1 HETATM 3 C CD KAA . . . C 2 -59.042 -21.606 -3.381 1 44.14 ? CD KAA 601 A 1 HETATM 4 C CG KAA . . . C 2 -58.64 -20.117 -3.514 1 42.81 ? CG KAA 601 A 1 HETATM 5 C CB KAA . . . C 2 -59.709 -19.382 -4.435 1 39.38 ? CB KAA 601 A 1 HETATM 6 C CA KAA . . . C 2 -59.55 -19.905 -5.888 1 42.14 ? CA KAA 601 A 1 HETATM 7 N N KAA . . . C 2 -58.366 -19.371 -6.497 1 40.17 ? N KAA 601 A 1 HETATM 8 C C KAA . . . C 2 -60.798 -19.525 -6.702 1 42.97 ? C KAA 601 A 1 HETATM 9 O O KAA . . . C 2 -60.697 -18.924 -7.721 1 47.47 ? O KAA 601 A 1 HETATM 10 N N8 KAA . . . C 2 -62.145 -19.905 -6.183 1 47.03 ? N8 KAA 601 A 1 HETATM 11 S S1 KAA . . . C 2 -63.552 -19.45 -7.116 1 47.76 ? S1 KAA 601 A 1 HETATM 12 O O1S KAA . . . C 2 -64.755 -20.278 -6.745 1 49.78 ? O1S KAA 601 A 1 HETATM 13 O O2S KAA . . . C 2 -63.38 -19.779 -8.574 1 49.84 ? O2S KAA 601 A 1 HETATM 14 O O5' KAA . . . C 2 -63.832 -17.838 -6.891 1 52.74 ? O5' KAA 601 A 1 HETATM 15 C C5' KAA . . . C 2 -63.698 -17.395 -5.568 1 48.67 ? C5' KAA 601 A 1 HETATM 16 C C4' KAA . . . C 2 -65 -16.6 -5.195 1 53.66 ? C4' KAA 601 A 1 HETATM 17 O O4' KAA . . . C 2 -65.178 -15.448 -6.211 1 52.99 ? O4' KAA 601 A 1 HETATM 18 C C3' KAA . . . C 2 -66.029 -17.335 -5.362 1 52.82 ? C3' KAA 601 A 1 HETATM 19 O O3' KAA . . . C 2 -66.369 -17.993 -4.119 1 50 ? O3' KAA 601 A 1 HETATM 20 C C2' KAA . . . C 2 -67.26 -16.308 -5.819 1 53.36 ? C2' KAA 601 A 1 HETATM 21 O O2' KAA . . . C 2 -67.954 -15.868 -4.625 1 51.17 ? O2' KAA 601 A 1 HETATM 22 C C1' KAA . . . C 2 -66.726 -15.296 -6.373 1 53.76 ? C1' KAA 601 A 1 HETATM 23 N N9 KAA . . . C 2 -67.06 -15.135 -7.839 1 51.41 ? N9 KAA 601 A 1 HETATM 24 C C8 KAA . . . C 2 -66.581 -16.168 -8.537 1 52.39 ? C8 KAA 601 A 1 HETATM 25 N N7 KAA . . . C 2 -66.893 -15.974 -9.852 1 50.63 ? N7 KAA 601 A 1 HETATM 26 C C5 KAA . . . C 2 -67.555 -14.813 -9.945 1 51.55 ? C5 KAA 601 A 1 HETATM 27 C C4 KAA . . . C 2 -67.658 -14.291 -8.709 1 53.91 ? C4 KAA 601 A 1 HETATM 28 N N3 KAA . . . C 2 -68.287 -13.107 -8.511 1 55.3 ? N3 KAA 601 A 1 HETATM 29 C C2 KAA . . . C 2 -68.825 -12.438 -9.569 1 52.56 ? C2 KAA 601 A 1 HETATM 30 N N1 KAA . . . C 2 -68.725 -12.957 -10.823 1 53.31 ? N1 KAA 601 A 1 HETATM 31 C C6 KAA . . . C 2 -68.103 -14.126 -11.019 1 54.85 ? C6 KAA 601 A 1 HETATM 32 N N6 KAA . . . C 2 -68.197 -14.343 -12.425 1 58.95 ? N6 KAA 601 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #