data_6ILH
#
_model_server_result.job_id            -5YADHPF_LeP4dtaVDMtaQ 
_model_server_result.datetime_utc      '2025-02-16 13:36:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ilh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6ILH 
#
_exptl.entry_id    6ILH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.492 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ILH 
_cell.length_a            152.18 
_cell.length_b            152.18 
_cell.length_c            106.32 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ILH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H26 N8 O7 S' 
_chem_comp.formula_weight    474.492 
_chem_comp.id                KAA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NZ CE KAA sing 173 n n 
NZ HNZ1 KAA sing 174 n n 
NZ HNZ2 KAA sing 175 n n 
CE CD KAA sing 176 n n 
CE HE1 KAA sing 177 n n 
CE HE2 KAA sing 178 n n 
CD CG KAA sing 179 n n 
CD HD1 KAA sing 180 n n 
CD HD2 KAA sing 181 n n 
CG CB KAA sing 182 n n 
CG HG1 KAA sing 183 n n 
CG HG2 KAA sing 184 n n 
CB CA KAA sing 185 n n 
CB HB1 KAA sing 186 n n 
CB HB2 KAA sing 187 n n 
CA C KAA sing 188 n n 
CA N KAA sing 189 n n 
CA HA KAA sing 190 n n 
N HN1 KAA sing 191 n n 
N HN2 KAA sing 192 n n 
C O KAA doub 193 n n 
C N8 KAA sing 194 n n 
N8 S1 KAA sing 195 n n 
N8 HN8 KAA sing 196 n n 
S1 O1S KAA doub 197 n n 
S1 O5' KAA sing 198 n n 
S1 O2S KAA doub 199 n n 
O5' C5' KAA sing 200 n n 
C5' C4' KAA sing 201 n n 
C5' "H5'1" KAA sing 202 n n 
C5' "H5'2" KAA sing 203 n n 
C4' O4' KAA sing 204 n n 
C4' C3' KAA sing 205 n n 
C4' H4' KAA sing 206 n n 
O4' C1' KAA sing 207 n n 
C3' C2' KAA sing 208 n n 
C3' O3' KAA sing 209 n n 
C3' H3' KAA sing 210 n n 
O3' HO3' KAA sing 211 n n 
C2' C1' KAA sing 212 n n 
C2' O2' KAA sing 213 n n 
C2' H2' KAA sing 214 n n 
O2' HO2' KAA sing 215 n n 
C1' N9 KAA sing 216 n n 
C1' H1' KAA sing 217 n n 
N9 C4 KAA sing 218 n y 
N9 C8 KAA sing 219 n y 
C8 N7 KAA doub 220 n y 
C8 H8 KAA sing 221 n n 
N7 C5 KAA sing 222 n y 
C5 C6 KAA sing 223 n y 
C5 C4 KAA doub 224 n y 
C4 N3 KAA sing 225 n y 
N3 C2 KAA doub 226 n y 
C2 N1 KAA sing 227 n y 
C2 H2 KAA sing 228 n n 
N1 C6 KAA doub 229 n y 
C6 N6 KAA sing 230 n n 
N6 HN61 KAA sing 231 n n 
N6 HN62 KAA sing 232 n n 
#
_atom_sites.entry_id                     6ILH 
_atom_sites.fract_transf_matrix[1][1]    0.006571 
_atom_sites.fract_transf_matrix[1][2]    0.003794 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KAA A 1 601 2 KAA KAA . 
D 2 KAA B 1 601 1 KAA KAA . 
E 3 HOH A 1 701 53 HOH HOH . 
E 3 HOH A 2 702 37 HOH HOH . 
E 3 HOH A 3 703 8 HOH HOH . 
E 3 HOH A 4 704 7 HOH HOH . 
E 3 HOH A 5 705 2 HOH HOH . 
E 3 HOH A 6 706 14 HOH HOH . 
E 3 HOH A 7 707 10 HOH HOH . 
E 3 HOH A 8 708 51 HOH HOH . 
E 3 HOH A 9 709 31 HOH HOH . 
E 3 HOH A 10 710 48 HOH HOH . 
E 3 HOH A 11 711 45 HOH HOH . 
E 3 HOH A 12 712 4 HOH HOH . 
E 3 HOH A 13 713 55 HOH HOH . 
E 3 HOH A 14 714 19 HOH HOH . 
E 3 HOH A 15 715 25 HOH HOH . 
E 3 HOH A 16 716 16 HOH HOH . 
E 3 HOH A 17 717 3 HOH HOH . 
E 3 HOH A 18 718 39 HOH HOH . 
E 3 HOH A 19 719 27 HOH HOH . 
E 3 HOH A 20 720 12 HOH HOH . 
E 3 HOH A 21 721 33 HOH HOH . 
E 3 HOH A 22 722 59 HOH HOH . 
E 3 HOH A 23 723 50 HOH HOH . 
E 3 HOH A 24 724 20 HOH HOH . 
E 3 HOH A 25 725 46 HOH HOH . 
E 3 HOH A 26 726 42 HOH HOH . 
E 3 HOH A 27 727 22 HOH HOH . 
E 3 HOH A 28 728 24 HOH HOH . 
E 3 HOH A 29 729 29 HOH HOH . 
E 3 HOH A 30 730 18 HOH HOH . 
E 3 HOH A 31 731 30 HOH HOH . 
E 3 HOH A 32 732 5 HOH HOH . 
E 3 HOH A 33 733 62 HOH HOH . 
E 3 HOH A 34 734 61 HOH HOH . 
E 3 HOH A 35 735 58 HOH HOH . 
E 3 HOH A 36 736 11 HOH HOH . 
E 3 HOH A 37 737 60 HOH HOH . 
E 3 HOH A 38 738 17 HOH HOH . 
F 3 HOH B 1 701 44 HOH HOH . 
F 3 HOH B 2 702 6 HOH HOH . 
F 3 HOH B 3 703 28 HOH HOH . 
F 3 HOH B 4 704 1 HOH HOH . 
F 3 HOH B 5 705 23 HOH HOH . 
F 3 HOH B 6 706 38 HOH HOH . 
F 3 HOH B 7 707 9 HOH HOH . 
F 3 HOH B 8 708 34 HOH HOH . 
F 3 HOH B 9 709 43 HOH HOH . 
F 3 HOH B 10 710 21 HOH HOH . 
F 3 HOH B 11 711 13 HOH HOH . 
F 3 HOH B 12 712 32 HOH HOH . 
F 3 HOH B 13 713 15 HOH HOH . 
F 3 HOH B 14 714 26 HOH HOH . 
F 3 HOH B 15 715 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NZ KAA . . . D 2 -56.307 13.773 -13.092 1 50.45 ? NZ KAA 601 B 1 
HETATM 2 C CE KAA . . . D 2 -54.869 14.057 -13.031 1 46.8 ? CE KAA 601 B 1 
HETATM 3 C CD KAA . . . D 2 -54.08 12.868 -13.642 1 46.98 ? CD KAA 601 B 1 
HETATM 4 C CG KAA . . . D 2 -54.413 11.587 -12.836 1 46.62 ? CG KAA 601 B 1 
HETATM 5 C CB KAA . . . D 2 -53.537 10.368 -13.373 1 40.84 ? CB KAA 601 B 1 
HETATM 6 C CA KAA . . . D 2 -53.739 10.207 -14.906 1 38.44 ? CA KAA 601 B 1 
HETATM 7 N N KAA . . . D 2 -55 9.591 -15.199 1 37.76 ? N KAA 601 B 1 
HETATM 8 C C KAA . . . D 2 -52.577 9.374 -15.479 1 44.27 ? C KAA 601 B 1 
HETATM 9 O O KAA . . . D 2 -52.771 8.303 -15.958 1 46.83 ? O KAA 601 B 1 
HETATM 10 N N8 KAA . . . D 2 -51.192 9.925 -15.406 1 45.13 ? N8 KAA 601 B 1 
HETATM 11 S S1 KAA . . . D 2 -49.875 8.97 -16.045 1 48.29 ? S1 KAA 601 B 1 
HETATM 12 O O1S KAA . . . D 2 -48.637 9.805 -16.249 1 48.56 ? O1S KAA 601 B 1 
HETATM 13 O O2S KAA . . . D 2 -50.16 8.488 -17.442 1 48.64 ? O2S KAA 601 B 1 
HETATM 14 O O5' KAA . . . D 2 -49.592 7.708 -15.018 1 50.42 ? O5' KAA 601 B 1 
HETATM 15 C C5' KAA . . . D 2 -49.524 8.06 -13.663 1 47.22 ? C5' KAA 601 B 1 
HETATM 16 C C4' KAA . . . D 2 -48.149 7.559 -13.091 1 48.65 ? C4' KAA 601 B 1 
HETATM 17 O O4' KAA . . . D 2 -48.03 6.034 -13.329 1 45.4 ? O4' KAA 601 B 1 
HETATM 18 C C3' KAA . . . D 2 -47.178 8.052 -13.754 1 52.39 ? C3' KAA 601 B 1 
HETATM 19 O O3' KAA . . . D 2 -46.742 9.291 -13.148 1 56.71 ? O3' KAA 601 B 1 
HETATM 20 C C2' KAA . . . D 2 -45.954 6.921 -13.685 1 50.94 ? C2' KAA 601 B 1 
HETATM 21 O O2' KAA . . . D 2 -45.072 7.243 -12.581 1 54.18 ? O2' KAA 601 B 1 
HETATM 22 C C1' KAA . . . D 2 -46.492 5.786 -13.479 1 46.36 ? C1' KAA 601 B 1 
HETATM 23 N N9 KAA . . . D 2 -46.266 4.817 -14.614 1 43.38 ? N9 KAA 601 B 1 
HETATM 24 C C8 KAA . . . D 2 -46.776 5.337 -15.733 1 43.48 ? C8 KAA 601 B 1 
HETATM 25 N N7 KAA . . . D 2 -46.573 4.451 -16.746 1 40.08 ? N7 KAA 601 B 1 
HETATM 26 C C5 KAA . . . D 2 -45.944 3.387 -16.231 1 41.53 ? C5 KAA 601 B 1 
HETATM 27 C C4 KAA . . . D 2 -45.752 3.604 -14.917 1 42.76 ? C4 KAA 601 B 1 
HETATM 28 N N3 KAA . . . D 2 -45.132 2.673 -14.153 1 41.56 ? N3 KAA 601 B 1 
HETATM 29 C C2 KAA . . . D 2 -44.697 1.512 -14.721 1 42.6 ? C2 KAA 601 B 1 
HETATM 30 N N1 KAA . . . D 2 -44.889 1.286 -16.051 1 47.51 ? N1 KAA 601 B 1 
HETATM 31 C C6 KAA . . . D 2 -45.504 2.207 -16.803 1 42.88 ? C6 KAA 601 B 1 
HETATM 32 N N6 KAA . . . D 2 -45.529 1.651 -18.114 1 43.3 ? N6 KAA 601 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#