data_6ILM # _model_server_result.job_id O0T-M2v9bgxqjbwP245_Hg _model_server_result.datetime_utc '2024-11-24 21:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ilm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 6ILM # _exptl.entry_id 6ILM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 39.098 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ILM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ILM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 540-meric 540 'complete icosahedral assembly' 1 ? nonameric 9 'icosahedral asymmetric unit' 2 ? 45-meric 45 'icosahedral pentamer' 3 ? 54-meric 54 'icosahedral 23 hexamer' 4 ? nonameric 9 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-60) A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 (1-5) A,B,C,D,E,F,G,H,I 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.516992 -0.310774 0.797583 -0.287633 0.814516 0.503816 -0.806217 -0.48988 0.331709 -269.23416 -275.97257 260.57558 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.79313 -0.526917 -0.305456 0.513615 0.309108 0.800407 -0.327329 -0.791713 0.515796 279.10995 -166.91591 430.57555 3 'point symmetry operation' ? ? 0.458407 -0.338955 -0.821567 0.304129 -0.808778 0.503372 -0.835086 -0.480612 -0.267663 456.90951 269.4798 693.45326 4 'point symmetry operation' ? ? 0.458407 0.304129 -0.835086 -0.338955 -0.808778 -0.480612 -0.821567 0.503372 -0.267663 287.68574 706.1031 425.34506 5 'point symmetry operation' ? ? 0.79313 0.513615 -0.327329 -0.526917 0.309108 -0.791713 -0.305456 0.800407 0.515796 5.30013 539.55542 -3.23262 6 'point symmetry operation' ? ? 0.299973 0.7899 -0.534859 0.7899 -0.520035 -0.324995 -0.534859 -0.324995 -0.779938 119.62581 282.22629 707.55181 7 'point symmetry operation' ? ? 0.818697 0.509559 0.264735 0.465776 -0.319656 -0.82515 -0.335839 0.798855 -0.499042 -158.79298 449.56217 276.69188 8 'point symmetry operation' ? ? 0.824395 -0.483471 0.294328 0.475337 0.309049 -0.823738 0.307291 0.81899 0.48459 98.6483 277.63088 -165.26084 9 'point symmetry operation' ? ? 0.309192 -0.816856 -0.486976 0.80537 0.497231 -0.32271 0.505747 -0.292417 0.811611 536.17455 4.03563 -7.54273 10 'point symmetry operation' ? ? -0.014918 -0.02987 -0.999442 0.99978 -0.015171 -0.01447 -0.014731 -0.999439 0.03009 549.13937 6.87574 531.88516 11 'point symmetry operation' ? ? -0.834534 -0.468564 -0.289828 -0.468564 0.326874 0.820732 -0.289828 0.820732 -0.49234 698.54483 87.95952 256.60263 12 'point symmetry operation' ? ? -0.807686 0.524354 -0.269621 -0.472395 -0.301851 0.828088 0.352826 0.796203 0.491503 419.0359 256.00526 -173.27408 13 'point symmetry operation' ? ? -0.283029 0.801129 0.52734 -0.800763 -0.5 0.329817 0.527895 -0.328927 0.783029 -10.01276 531.0932 3.93333 14 'point symmetry operation' ? ? 0.014379 -0.020734 0.999682 -0.999875 0.006261 0.014512 -0.00656 -0.999765 -0.020641 4.32952 533.06116 543.33023 15 'point symmetry operation' ? ? -0.326469 -0.805447 0.494644 -0.794565 0.517297 0.317915 -0.511941 -0.289237 -0.808862 442.24219 259.18949 699.48845 16 'point symmetry operation' ? ? -0.465439 -0.321335 0.824688 -0.321335 -0.806839 -0.495737 0.824688 -0.495737 0.272278 261.40325 704.86992 105.2079 17 'point symmetry operation' ? ? -0.804141 -0.506996 0.310342 -0.506996 0.312398 -0.803345 0.310342 -0.803345 -0.508257 540.22102 536.40422 535.36897 18 'point symmetry operation' ? ? -0.999773 0.021297 -0.000101 0.021297 0.999729 -0.009451 -0.000101 -0.009451 -0.999955 534.02884 -3.14815 537.23659 19 'point symmetry operation' ? ? -0.781979 0.53346 0.322381 0.53346 0.305286 0.78881 0.322381 0.78881 -0.523307 251.38408 -168.14415 108.22976 20 'point symmetry operation' ? ? -0.451742 0.321702 0.832128 0.321702 -0.811234 0.488269 0.832128 0.488269 0.262976 82.8922 269.43508 -158.77865 21 'point symmetry operation' ? ? -0.333617 -0.820552 -0.464106 0.812556 -0.499904 0.299749 -0.477968 -0.27711 0.833521 704.54354 103.68161 247.98428 22 'point symmetry operation' ? ? -0.534134 0.289587 -0.794254 0.289587 -0.819989 -0.493717 -0.794254 -0.493717 0.354123 548.5585 542.98036 519.72655 23 'point symmetry operation' ? ? -0.014918 0.99978 -0.014731 -0.02987 -0.015171 -0.999439 -0.999442 -0.01447 0.03009 9.15313 548.09373 532.92835 24 'point symmetry operation' ? ? 0.506492 0.328564 0.79719 0.295663 0.802318 -0.518526 -0.809969 0.498328 0.309224 -168.23269 111.95521 269.34524 25 'point symmetry operation' ? ? 0.309525 -0.796464 0.519461 0.81631 0.502737 0.284416 -0.48768 0.336007 0.805771 261.54223 -162.70659 93.24012 26 'point symmetry operation' ? ? -0.499999 0.314024 0.807087 -0.311453 0.804388 -0.505922 -0.808083 -0.50433 -0.304389 104.67427 271.88593 702.35828 27 'point symmetry operation' ? ? -0.49946 -0.278456 0.820367 0.331727 0.813298 0.478021 -0.800311 0.51089 -0.313838 260.2161 -167.14641 429.93225 28 'point symmetry operation' ? ? -0.807686 -0.472395 0.352826 0.524354 -0.301851 0.796203 -0.269621 0.828088 0.491503 520.52066 -4.48664 -13.84915 29 'point symmetry operation' ? ? -0.998719 0.000225 0.05059 0.000225 -0.99996 0.008908 0.05059 0.008908 0.99868 525.85588 535.07496 -15.69512 30 'point symmetry operation' ? ? -0.808558 0.486259 0.331339 -0.516332 -0.316267 -0.79585 -0.282197 -0.814572 0.506791 268.84868 705.8826 426.94542 31 'point symmetry operation' ? ? 0.797407 -0.492802 -0.348264 -0.530744 -0.298127 -0.793367 0.287146 0.817476 -0.49928 280.23118 704.23319 103.6116 32 'point symmetry operation' ? ? 0.493334 -0.296771 -0.817648 -0.314379 0.815624 -0.485719 0.811041 0.496673 0.309076 435.09791 264.25492 -167.67055 33 'point symmetry operation' ? ? 0.506492 0.295663 -0.809969 0.328564 0.802318 0.498328 0.79719 -0.518526 0.309224 270.2688 -168.77088 108.87712 34 'point symmetry operation' ? ? 0.818697 0.465776 -0.335839 0.509559 -0.319656 0.798855 0.264735 -0.82515 -0.499042 13.53208 3.58273 551.07513 35 'point symmetry operation' ? ? 0.998493 -0.021522 -0.05049 -0.021522 -0.999768 0.000544 -0.05049 0.000544 -0.998724 19.68917 543.12892 547.82086 36 'point symmetry operation' ? ? 0.036209 0.99933 0.005282 0.029641 -0.006357 0.99954 0.998905 -0.036035 -0.029851 -9.8751 -4.745 15.40818 37 'point symmetry operation' ? ? 0.54026 0.28564 0.791536 -0.306935 -0.808933 0.501416 0.783524 -0.513845 -0.349361 -164.29862 434.96686 287.37408 38 'point symmetry operation' ? ? 0.316113 -0.823048 0.471874 -0.823048 -0.485296 -0.295092 0.471874 -0.295092 -0.830816 279.63131 700.21952 441.40602 39 'point symmetry operation' ? ? -0.326469 -0.794565 -0.511941 -0.805447 0.517297 -0.289237 0.494644 0.317915 -0.808862 708.41861 424.44283 264.63708 40 'point symmetry operation' ? ? -0.49946 0.331727 -0.800311 -0.278456 0.813298 0.51089 0.820367 0.478021 -0.313838 529.49381 -11.2492 1.35594 41 'point symmetry operation' ? ? -0.333617 0.812556 -0.477968 -0.820552 -0.499904 -0.27711 -0.464106 0.299749 0.833521 269.32893 698.66461 89.20408 42 'point symmetry operation' ? ? 0.309192 0.80537 0.505747 -0.816856 0.497231 -0.292417 -0.486976 -0.32271 0.811611 -165.21648 433.76529 268.52844 43 'point symmetry operation' ? ? 0.493334 -0.314379 0.811041 -0.296771 0.815624 0.496673 -0.817648 -0.485719 0.309076 4.41541 -3.13061 535.93374 44 'point symmetry operation' ? ? -0.03567 -0.999235 0.016009 0.020963 0.015267 0.999664 -0.999144 0.035993 0.020402 543.79909 -8.2478 521.87494 45 'point symmetry operation' ? ? -0.546753 -0.302752 -0.780642 -0.302752 -0.797774 0.521439 -0.780642 0.521439 0.344527 707.52465 425.4855 245.78083 46 'point symmetry operation' ? ? 0.797407 -0.530744 0.287146 -0.492802 -0.298127 0.817476 -0.348264 -0.793367 -0.49928 120.55751 263.3494 708.04114 47 'point symmetry operation' ? ? 0.265858 -0.811562 -0.520275 -0.811562 -0.479694 0.333557 -0.520275 0.333557 -0.786164 555.3495 527.55045 528.28487 48 'point symmetry operation' ? ? -0.03567 0.020963 -0.999144 -0.999235 0.015267 0.035993 0.016009 0.999664 0.020402 540.99809 524.72527 -11.10799 49 'point symmetry operation' ? ? 0.309525 0.81631 -0.48768 -0.796464 0.502737 0.336007 0.519461 0.284416 0.805771 97.33644 258.77815 -164.71483 50 'point symmetry operation' ? ? 0.824395 0.475337 0.307291 -0.483471 0.309049 0.81899 0.294328 -0.823738 0.48459 -162.51013 97.23898 279.74377 51 'point symmetry operation' ? ? 0.036209 0.029641 0.998905 0.99933 -0.006357 -0.036035 0.005282 0.99954 -0.029851 -14.89309 10.39356 5.25493 52 'point symmetry operation' ? ? -0.283029 -0.800763 0.527895 0.801129 -0.5 -0.328927 0.52734 0.329817 0.783029 420.36945 274.86181 -172.96309 53 'point symmetry operation' ? ? -0.808558 -0.516332 -0.282197 0.486259 -0.316267 -0.814572 0.331339 -0.79585 0.506791 702.33218 440.29507 256.32405 54 'point symmetry operation' ? ? -0.814116 0.48986 -0.311853 0.48986 0.290928 -0.821826 -0.311853 -0.821826 -0.476812 441.33219 278.0702 699.85612 55 'point symmetry operation' ? ? -0.292021 0.82729 0.479912 0.806956 0.482463 -0.340664 -0.513367 0.287786 -0.808476 -1.9374 12.37645 544.68687 56 'point symmetry operation' ? ? -0.499999 -0.311453 -0.808083 0.314024 0.804388 -0.50433 0.807087 -0.505922 -0.304389 704.58054 102.64816 266.86218 57 'point symmetry operation' ? ? -0.292021 0.806956 -0.513367 0.82729 0.482463 0.287786 0.479912 -0.340664 -0.808476 269.07142 -161.12181 445.51211 58 'point symmetry operation' ? ? 0.350894 0.809748 0.4703 0.809748 -0.514624 0.281905 0.4703 0.281905 -0.83627 -168.17179 113.16601 288.21253 59 'point symmetry operation' ? ? 0.54026 -0.306935 0.783524 0.28564 -0.808933 -0.513845 0.791536 0.501416 -0.349361 -2.89383 546.45518 12.34611 60 'point symmetry operation' ? ? 0.014379 -0.999875 -0.00656 -0.020734 0.006261 -0.999765 0.999682 0.014512 -0.020641 536.49677 539.9548 -0.84913 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 25 F CYS 25 1_555 F SG CYS 80 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O VAL 14 A VAL 14 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc2 A OD1 ASP 16 A ASP 16 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc3 A OD2 ASP 16 A ASP 16 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.327 ? metalc ? metalc4 D O LEU 64 D LEU 64 1_555 I NA NA . D NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ILM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 SPH A 1 301 301 SPH SPH . H 8 K A 1 302 303 K K . I 9 NA D 1 101 304 NA NA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 8 _atom_site.Cartn_x 163.195 _atom_site.Cartn_y 259.316 _atom_site.Cartn_z 292.868 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #