data_6ILZ
#
_model_server_result.job_id            rLfoOX9mQqNvuFig2FXEMg 
_model_server_result.datetime_utc      '2024-11-22 14:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ilz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    6ILZ 
#
_exptl.entry_id    6ILZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              374.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-5-[3-(piperazin-1-yl)phenyl]-N-(pyridin-4-yl)pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.69 
_cell.angle_gamma         90 
_cell.entry_id            6ILZ 
_cell.length_a            87.87 
_cell.length_b            87.63 
_cell.length_c            105.181 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ILZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 168 A SER 411 1_555 A N TPO 169 A TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C TPO 169 A TPO 412 1_555 A N PHE 170 A PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C LEU 320 A LEU 563 1_555 A N TPO 321 A TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C TPO 321 A TPO 564 1_555 A N PRO 322 A PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale5 B C SER 168 C SER 411 1_555 B N TPO 169 C TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B C TPO 169 C TPO 412 1_555 B N PHE 170 C PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale7 B C LEU 320 C LEU 563 1_555 B N TPO 321 C TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 B C TPO 321 C TPO 564 1_555 B N PRO 322 C PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale9 C C SER 168 E SER 411 1_555 C N TPO 169 E TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale10 C C TPO 169 E TPO 412 1_555 C N PHE 170 E PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 C C LEU 320 E LEU 563 1_555 C N TPO 321 E TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale12 C C TPO 321 E TPO 564 1_555 C N PRO 322 E PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale13 D C SER 168 G SER 411 1_555 D N TPO 169 G TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale14 D C TPO 169 G TPO 412 1_555 D N PHE 170 G PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale15 D C LEU 320 G LEU 563 1_555 D N TPO 321 G TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 D C TPO 321 G TPO 564 1_555 D N PRO 322 G PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
#
_chem_comp.formula           'C21 H22 N6 O' 
_chem_comp.formula_weight    374.439 
_chem_comp.id                AFU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-5-[3-(piperazin-1-yl)phenyl]-N-(pyridin-4-yl)pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAB CAA AFU doub 1 n y 
NAB CAC AFU sing 2 n y 
CAA CAF AFU sing 3 n y 
NAZ CAY AFU sing 4 n n 
NAZ CBA AFU sing 5 n n 
CAY CAX AFU sing 6 n n 
CAC CAD AFU doub 7 n y 
CAF CAE AFU doub 8 n y 
CBA CBB AFU sing 9 n n 
CAX NAW AFU sing 10 n n 
CAE CAD AFU sing 11 n y 
CAE NAG AFU sing 12 n n 
NAG CAH AFU sing 13 n n 
NAW CBB AFU sing 14 n n 
NAW CAU AFU sing 15 n n 
CAH OAJ AFU doub 16 n n 
CAH CAI AFU sing 17 n n 
CAU CAV AFU doub 18 n y 
CAU CAT AFU sing 19 n y 
CAV CAQ AFU sing 20 n y 
CAO CAI AFU doub 21 n y 
CAO CAN AFU sing 22 n y 
CAI CAK AFU sing 23 n y 
CAT CAS AFU doub 24 n y 
CAQ CAN AFU sing 25 n n 
CAQ CAR AFU doub 26 n y 
CAN CAM AFU doub 27 n y 
CAK NAP AFU sing 28 n n 
CAK NAL AFU doub 29 n y 
CAS CAR AFU sing 30 n y 
CAM NAL AFU sing 31 n y 
CAA H1 AFU sing 32 n n 
CAC H2 AFU sing 33 n n 
CAD H3 AFU sing 34 n n 
CAF H4 AFU sing 35 n n 
CAM H5 AFU sing 36 n n 
CAO H6 AFU sing 37 n n 
CAR H7 AFU sing 38 n n 
CAS H8 AFU sing 39 n n 
CAT H9 AFU sing 40 n n 
CAV H10 AFU sing 41 n n 
CAX H11 AFU sing 42 n n 
CAX H12 AFU sing 43 n n 
CAY H13 AFU sing 44 n n 
CAY H14 AFU sing 45 n n 
CBA H15 AFU sing 46 n n 
CBA H16 AFU sing 47 n n 
CBB H17 AFU sing 48 n n 
CBB H18 AFU sing 49 n n 
NAG H19 AFU sing 50 n n 
NAP H20 AFU sing 51 n n 
NAP H21 AFU sing 52 n n 
NAZ H22 AFU sing 53 n n 
#
_atom_sites.entry_id                     6ILZ 
_atom_sites.fract_transf_matrix[1][1]    0.01138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005232 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AFU A 1 601 2 AFU DRG . 
F 2 AFU C 1 601 2 AFU DRG . 
G 2 AFU E 1 601 2 AFU DRG . 
H 2 AFU G 1 601 2 AFU DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA AFU . . . H 2 21.4 0.854 35.418 1 31.28 ? CAA AFU 601 G 1 
HETATM 2 C CAC AFU . . . H 2 23.438 -0.065 34.479 1 31.12 ? CAC AFU 601 G 1 
HETATM 3 C CAD AFU . . . H 2 22.684 -0.853 33.621 1 31.4 ? CAD AFU 601 G 1 
HETATM 4 C CAE AFU . . . H 2 21.293 -0.826 33.68 1 31.46 ? CAE AFU 601 G 1 
HETATM 5 C CAF AFU . . . H 2 20.657 0.067 34.539 1 31.45 ? CAF AFU 601 G 1 
HETATM 6 C CAH AFU . . . H 2 20.898 -2.398 31.958 1 31.73 ? CAH AFU 601 G 1 
HETATM 7 C CAI AFU . . . H 2 19.84 -2.895 31.264 1 32.13 ? CAI AFU 601 G 1 
HETATM 8 C CAK AFU . . . H 2 19.947 -3.805 30.219 1 31.98 ? CAK AFU 601 G 1 
HETATM 9 C CAM AFU . . . H 2 17.595 -3.693 29.911 1 33.61 ? CAM AFU 601 G 1 
HETATM 10 C CAN AFU . . . H 2 17.492 -2.808 30.982 1 34.32 ? CAN AFU 601 G 1 
HETATM 11 C CAO AFU . . . H 2 18.622 -2.364 31.623 1 33.05 ? CAO AFU 601 G 1 
HETATM 12 C CAQ AFU . . . H 2 16.283 -2.236 31.325 1 36.32 ? CAQ AFU 601 G 1 
HETATM 13 C CAR AFU . . . H 2 15.246 -2.374 30.417 1 37.53 ? CAR AFU 601 G 1 
HETATM 14 C CAS AFU . . . H 2 14.04 -1.751 30.688 1 38.24 ? CAS AFU 601 G 1 
HETATM 15 C CAT AFU . . . H 2 13.857 -0.996 31.837 1 38.39 ? CAT AFU 601 G 1 
HETATM 16 C CAU AFU . . . H 2 14.901 -0.84 32.737 1 38.43 ? CAU AFU 601 G 1 
HETATM 17 C CAV AFU . . . H 2 16.142 -1.423 32.458 1 37.09 ? CAV AFU 601 G 1 
HETATM 18 C CAX AFU . . . H 2 15.648 0.217 34.871 1 39.86 ? CAX AFU 601 G 1 
HETATM 19 C CAY AFU . . . H 2 14.926 0.367 36.217 1 40.15 ? CAY AFU 601 G 1 
HETATM 20 C CBA AFU . . . H 2 12.958 1.055 35.173 1 41.25 ? CBA AFU 601 G 1 
HETATM 21 C CBB AFU . . . H 2 13.59 0.931 33.795 1 40.65 ? CBB AFU 601 G 1 
HETATM 22 N NAB AFU . . . H 2 22.807 0.797 35.387 1 31.1 ? NAB AFU 601 G 1 
HETATM 23 N NAG AFU . . . H 2 20.504 -1.494 32.847 1 31.71 ? NAG AFU 601 G 1 
HETATM 24 N NAL AFU . . . H 2 18.854 -4.219 29.557 1 32.81 ? NAL AFU 601 G 1 
HETATM 25 N NAP AFU . . . H 2 21.168 -4.257 29.935 1 31.41 ? NAP AFU 601 G 1 
HETATM 26 N NAW AFU . . . H 2 14.665 -0.08 33.814 1 39.75 ? NAW AFU 601 G 1 
HETATM 27 N NAZ AFU . . . H 2 13.926 1.466 36.222 1 40.61 ? NAZ AFU 601 G 1 
HETATM 28 O OAJ AFU . . . H 2 22.005 -2.886 31.827 1 31.46 ? OAJ AFU 601 G 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#