data_6ILZ # _model_server_result.job_id sX5zKckjs9XRZswd2s1Qww _model_server_result.datetime_utc '2024-12-02 07:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ilz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 6ILZ # _exptl.entry_id 6ILZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-5-[3-(piperazin-1-yl)phenyl]-N-(pyridin-4-yl)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.69 _cell.angle_gamma 90 _cell.entry_id 6ILZ _cell.length_a 87.87 _cell.length_b 87.63 _cell.length_c 105.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ILZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 168 A SER 411 1_555 A N TPO 169 A TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C TPO 169 A TPO 412 1_555 A N PHE 170 A PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 320 A LEU 563 1_555 A N TPO 321 A TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C TPO 321 A TPO 564 1_555 A N PRO 322 A PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 B C SER 168 C SER 411 1_555 B N TPO 169 C TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C TPO 169 C TPO 412 1_555 B N PHE 170 C PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale7 B C LEU 320 C LEU 563 1_555 B N TPO 321 C TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C TPO 321 C TPO 564 1_555 B N PRO 322 C PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale9 C C SER 168 E SER 411 1_555 C N TPO 169 E TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 C C TPO 169 E TPO 412 1_555 C N PHE 170 E PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 C C LEU 320 E LEU 563 1_555 C N TPO 321 E TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 C C TPO 321 E TPO 564 1_555 C N PRO 322 E PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale13 D C SER 168 G SER 411 1_555 D N TPO 169 G TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 D C TPO 169 G TPO 412 1_555 D N PHE 170 G PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 D C LEU 320 G LEU 563 1_555 D N TPO 321 G TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 D C TPO 321 G TPO 564 1_555 D N PRO 322 G PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C21 H22 N6 O' _chem_comp.formula_weight 374.439 _chem_comp.id AFU _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-5-[3-(piperazin-1-yl)phenyl]-N-(pyridin-4-yl)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB CAA AFU doub 1 n y NAB CAC AFU sing 2 n y CAA CAF AFU sing 3 n y NAZ CAY AFU sing 4 n n NAZ CBA AFU sing 5 n n CAY CAX AFU sing 6 n n CAC CAD AFU doub 7 n y CAF CAE AFU doub 8 n y CBA CBB AFU sing 9 n n CAX NAW AFU sing 10 n n CAE CAD AFU sing 11 n y CAE NAG AFU sing 12 n n NAG CAH AFU sing 13 n n NAW CBB AFU sing 14 n n NAW CAU AFU sing 15 n n CAH OAJ AFU doub 16 n n CAH CAI AFU sing 17 n n CAU CAV AFU doub 18 n y CAU CAT AFU sing 19 n y CAV CAQ AFU sing 20 n y CAO CAI AFU doub 21 n y CAO CAN AFU sing 22 n y CAI CAK AFU sing 23 n y CAT CAS AFU doub 24 n y CAQ CAN AFU sing 25 n n CAQ CAR AFU doub 26 n y CAN CAM AFU doub 27 n y CAK NAP AFU sing 28 n n CAK NAL AFU doub 29 n y CAS CAR AFU sing 30 n y CAM NAL AFU sing 31 n y CAA H1 AFU sing 32 n n CAC H2 AFU sing 33 n n CAD H3 AFU sing 34 n n CAF H4 AFU sing 35 n n CAM H5 AFU sing 36 n n CAO H6 AFU sing 37 n n CAR H7 AFU sing 38 n n CAS H8 AFU sing 39 n n CAT H9 AFU sing 40 n n CAV H10 AFU sing 41 n n CAX H11 AFU sing 42 n n CAX H12 AFU sing 43 n n CAY H13 AFU sing 44 n n CAY H14 AFU sing 45 n n CBA H15 AFU sing 46 n n CBA H16 AFU sing 47 n n CBB H17 AFU sing 48 n n CBB H18 AFU sing 49 n n NAG H19 AFU sing 50 n n NAP H20 AFU sing 51 n n NAP H21 AFU sing 52 n n NAZ H22 AFU sing 53 n n # _atom_sites.entry_id 6ILZ _atom_sites.fract_transf_matrix[1][1] 0.01138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005232 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AFU A 1 601 2 AFU DRG . F 2 AFU C 1 601 2 AFU DRG . G 2 AFU E 1 601 2 AFU DRG . H 2 AFU G 1 601 2 AFU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA AFU . . . H 2 21.4 0.854 35.418 1 31.28 ? CAA AFU 601 G 1 HETATM 2 C CAC AFU . . . H 2 23.438 -0.065 34.479 1 31.12 ? CAC AFU 601 G 1 HETATM 3 C CAD AFU . . . H 2 22.684 -0.853 33.621 1 31.4 ? CAD AFU 601 G 1 HETATM 4 C CAE AFU . . . H 2 21.293 -0.826 33.68 1 31.46 ? CAE AFU 601 G 1 HETATM 5 C CAF AFU . . . H 2 20.657 0.067 34.539 1 31.45 ? CAF AFU 601 G 1 HETATM 6 C CAH AFU . . . H 2 20.898 -2.398 31.958 1 31.73 ? CAH AFU 601 G 1 HETATM 7 C CAI AFU . . . H 2 19.84 -2.895 31.264 1 32.13 ? CAI AFU 601 G 1 HETATM 8 C CAK AFU . . . H 2 19.947 -3.805 30.219 1 31.98 ? CAK AFU 601 G 1 HETATM 9 C CAM AFU . . . H 2 17.595 -3.693 29.911 1 33.61 ? CAM AFU 601 G 1 HETATM 10 C CAN AFU . . . H 2 17.492 -2.808 30.982 1 34.32 ? CAN AFU 601 G 1 HETATM 11 C CAO AFU . . . H 2 18.622 -2.364 31.623 1 33.05 ? CAO AFU 601 G 1 HETATM 12 C CAQ AFU . . . H 2 16.283 -2.236 31.325 1 36.32 ? CAQ AFU 601 G 1 HETATM 13 C CAR AFU . . . H 2 15.246 -2.374 30.417 1 37.53 ? CAR AFU 601 G 1 HETATM 14 C CAS AFU . . . H 2 14.04 -1.751 30.688 1 38.24 ? CAS AFU 601 G 1 HETATM 15 C CAT AFU . . . H 2 13.857 -0.996 31.837 1 38.39 ? CAT AFU 601 G 1 HETATM 16 C CAU AFU . . . H 2 14.901 -0.84 32.737 1 38.43 ? CAU AFU 601 G 1 HETATM 17 C CAV AFU . . . H 2 16.142 -1.423 32.458 1 37.09 ? CAV AFU 601 G 1 HETATM 18 C CAX AFU . . . H 2 15.648 0.217 34.871 1 39.86 ? CAX AFU 601 G 1 HETATM 19 C CAY AFU . . . H 2 14.926 0.367 36.217 1 40.15 ? CAY AFU 601 G 1 HETATM 20 C CBA AFU . . . H 2 12.958 1.055 35.173 1 41.25 ? CBA AFU 601 G 1 HETATM 21 C CBB AFU . . . H 2 13.59 0.931 33.795 1 40.65 ? CBB AFU 601 G 1 HETATM 22 N NAB AFU . . . H 2 22.807 0.797 35.387 1 31.1 ? NAB AFU 601 G 1 HETATM 23 N NAG AFU . . . H 2 20.504 -1.494 32.847 1 31.71 ? NAG AFU 601 G 1 HETATM 24 N NAL AFU . . . H 2 18.854 -4.219 29.557 1 32.81 ? NAL AFU 601 G 1 HETATM 25 N NAP AFU . . . H 2 21.168 -4.257 29.935 1 31.41 ? NAP AFU 601 G 1 HETATM 26 N NAW AFU . . . H 2 14.665 -0.08 33.814 1 39.75 ? NAW AFU 601 G 1 HETATM 27 N NAZ AFU . . . H 2 13.926 1.466 36.222 1 40.61 ? NAZ AFU 601 G 1 HETATM 28 O OAJ AFU . . . H 2 22.005 -2.886 31.827 1 31.46 ? OAJ AFU 601 G 1 # _model_server_stats.io_time_ms 138 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #