data_6IMM # _model_server_result.job_id DyilvMdUW5cBmxWrQr8rwg _model_server_result.datetime_utc '2024-12-21 12:20:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6imm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1001}' # _entry.id 6IMM # _exptl.entry_id 6IMM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 254.494 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Octadecane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 720-meric 720 'complete icosahedral assembly' 1 ? dodecameric 12 'icosahedral asymmetric unit' 2 ? 60-meric 60 'icosahedral pentamer' 3 ? 72-meric 72 'icosahedral 23 hexamer' 4 ? dodecameric 12 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 (1-60) A,B,C,D,E,F,G,H,I,J,K,L,M 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M 3 (1-5) A,B,C,D,E,F,G,H,I,J,K,L,M 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I,J,K,L,M 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.525731 0 -0.850651 0 -1 0 -0.850651 0 0.525731 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.67082 -0.16246 -0.723607 0.688191 0.5 0.525731 0.276393 -0.850651 0.447214 0 0 0 3 'point symmetry operation' ? ? 0.138197 0.425325 -0.894427 0.951057 -0.309017 0 -0.276393 -0.850651 -0.447214 0 0 0 4 'point symmetry operation' ? ? 0.138197 0.951057 -0.276393 0.425325 -0.309017 -0.850651 -0.894427 0 -0.447214 0 0 0 5 'point symmetry operation' ? ? 0.67082 0.688191 0.276393 -0.16246 0.5 -0.850651 -0.723607 0.525731 0.447214 0 0 0 6 'point symmetry operation' ? ? 0.447214 0 -0.894427 0 -1 0 -0.894427 0 -0.447213 0 0 0 7 'point symmetry operation' ? ? 0.052786 0.688191 -0.723607 -0.688191 -0.5 -0.525731 -0.723607 0.525731 0.447214 0 0 0 8 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 0 0 0 9 'point symmetry operation' ? ? 0.861803 0.425325 0.276393 -0.425325 0.309017 0.850651 0.276393 -0.850651 0.447214 0 0 0 10 'point symmetry operation' ? ? 0.947214 -0.16246 -0.276393 0.16246 -0.5 0.850651 -0.276393 -0.850651 -0.447214 0 0 0 11 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 12 'point symmetry operation' ? ? -0.67082 0.16246 0.723607 0.688191 0.5 0.525731 -0.276393 0.850651 -0.447214 0 0 0 13 'point symmetry operation' ? ? -0.138197 -0.425325 0.894427 0.951057 -0.309017 0 0.276393 0.850651 0.447214 0 0 0 14 'point symmetry operation' ? ? -0.138197 -0.951057 0.276393 0.425325 -0.309017 -0.850651 0.894427 0 0.447214 0 0 0 15 'point symmetry operation' ? ? -0.67082 -0.688191 -0.276393 -0.16246 0.5 -0.850651 0.723607 -0.525731 -0.447214 0 0 0 16 'point symmetry operation' ? ? -0.447213 0 0.894427 0 -1 0 0.894427 0 0.447214 0 0 0 17 'point symmetry operation' ? ? -0.052786 -0.688191 0.723607 -0.688191 -0.5 -0.525731 0.723607 -0.525731 -0.447214 0 0 0 18 'point symmetry operation' ? ? -0.309017 -0.951057 0 -0.951057 0.309017 0 0 0 -1 0 0 0 19 'point symmetry operation' ? ? -0.861803 -0.425325 -0.276393 -0.425325 0.309017 0.850651 -0.276393 0.850651 -0.447214 0 0 0 20 'point symmetry operation' ? ? -0.947214 0.16246 0.276393 0.16246 -0.5 0.850651 0.276393 0.850651 0.447214 0 0 0 21 'point symmetry operation' ? ? 0.447214 0.850651 -0.276393 0.525731 0 0.850651 0.723607 -0.525731 -0.447214 0 0 0 22 'point symmetry operation' ? ? 0.809017 0.587785 0 0.587785 -0.809017 0 0 0 -1 0 0 0 23 'point symmetry operation' ? ? 0.947214 0.16246 -0.276393 -0.16246 -0.5 -0.850651 -0.276393 0.850651 -0.447214 0 0 0 24 'point symmetry operation' ? ? 0.67082 0.16246 -0.723607 -0.688191 0.5 -0.525731 0.276393 0.850651 0.447214 0 0 0 25 'point symmetry operation' ? ? 0.361803 0.587785 -0.723607 -0.262866 0.809017 0.525731 0.894427 0 0.447214 0 0 0 26 'point symmetry operation' ? ? 0.447214 -0.850651 -0.276393 -0.525731 0 -0.850651 0.723607 0.525731 -0.447214 0 0 0 27 'point symmetry operation' ? ? -0.361803 -0.262866 -0.894427 -0.587785 0.809017 0 0.723607 0.525731 -0.447214 0 0 0 28 'point symmetry operation' ? ? -0.67082 0.688191 -0.276393 0.16246 0.5 0.850651 0.723607 0.525731 -0.447214 0 0 0 29 'point symmetry operation' ? ? -0.052786 0.688191 0.723607 0.688191 -0.5 0.525731 0.723607 0.525731 -0.447214 0 0 0 30 'point symmetry operation' ? ? 0.638197 -0.262866 0.723607 0.262866 -0.809017 -0.525731 0.723607 0.525731 -0.447214 0 0 0 31 'point symmetry operation' ? ? -0.447214 0.850651 0.276393 -0.525731 0 -0.850651 -0.723607 -0.525731 0.447214 0 0 0 32 'point symmetry operation' ? ? 0.361803 0.262866 0.894427 -0.587785 0.809017 0 -0.723607 -0.525731 0.447214 0 0 0 33 'point symmetry operation' ? ? 0.67082 -0.688191 0.276393 0.16246 0.5 0.850651 -0.723607 -0.525731 0.447214 0 0 0 34 'point symmetry operation' ? ? 0.052786 -0.688191 -0.723607 0.688191 -0.5 0.525731 -0.723607 -0.525731 0.447214 0 0 0 35 'point symmetry operation' ? ? -0.638197 0.262866 -0.723607 0.262866 -0.809017 -0.525731 -0.723607 -0.525731 0.447214 0 0 0 36 'point symmetry operation' ? ? -0.447214 -0.850651 0.276393 0.525731 0 0.850651 -0.723607 0.525731 0.447214 0 0 0 37 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 0 0 0 38 'point symmetry operation' ? ? -0.947214 -0.16246 0.276393 -0.16246 -0.5 -0.850651 0.276393 -0.850651 0.447214 0 0 0 39 'point symmetry operation' ? ? -0.67082 -0.16246 0.723607 -0.688191 0.5 -0.525731 -0.276393 -0.850651 -0.447214 0 0 0 40 'point symmetry operation' ? ? -0.361803 -0.587785 0.723607 -0.262866 0.809017 0.525731 -0.894427 0 -0.447214 0 0 0 41 'point symmetry operation' ? ? 0.447214 0.525731 0.723607 0.850651 0 -0.525731 -0.276393 0.850651 -0.447214 0 0 0 42 'point symmetry operation' ? ? 0.861803 -0.425325 0.276393 0.425325 0.309017 -0.850651 0.276393 0.850651 0.447214 0 0 0 43 'point symmetry operation' ? ? 0.361803 -0.587785 -0.723607 0.262866 0.809017 -0.525731 0.894427 0 0.447214 0 0 0 44 'point symmetry operation' ? ? -0.361803 0.262866 -0.894427 0.587785 0.809017 0 0.723607 -0.525731 -0.447214 0 0 0 45 'point symmetry operation' ? ? -0.309017 0.951057 0 0.951057 0.309017 0 0 0 -1 0 0 0 46 'point symmetry operation' ? ? -0.447214 -0.525731 -0.723607 0.850651 0 -0.525731 0.276393 -0.850651 0.447214 0 0 0 47 'point symmetry operation' ? ? -0.861803 0.425325 -0.276393 0.425325 0.309017 -0.850651 -0.276393 -0.850651 -0.447214 0 0 0 48 'point symmetry operation' ? ? -0.361803 0.587785 0.723607 0.262866 0.809017 -0.525731 -0.894427 0 -0.447214 0 0 0 49 'point symmetry operation' ? ? 0.361803 -0.262866 0.894427 0.587785 0.809017 0 -0.723607 0.525731 0.447214 0 0 0 50 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 0 0 0 51 'point symmetry operation' ? ? -0.447214 0.525731 -0.723607 -0.850651 0 0.525731 0.276393 0.850651 0.447214 0 0 0 52 'point symmetry operation' ? ? -0.138197 0.951057 0.276393 -0.425325 -0.309017 0.850651 0.894427 0 0.447214 0 0 0 53 'point symmetry operation' ? ? 0.638197 0.262866 0.723607 -0.262866 -0.809017 0.525731 0.723607 -0.525731 -0.447214 0 0 0 54 'point symmetry operation' ? ? 0.809017 -0.587785 0 -0.587785 -0.809017 0 0 0 -1 0 0 0 55 'point symmetry operation' ? ? 0.138197 -0.425325 -0.894427 -0.951057 -0.309017 0 -0.276393 0.850651 -0.447214 0 0 0 56 'point symmetry operation' ? ? 0.447214 -0.525731 0.723607 -0.850651 0 0.525731 -0.276393 -0.850651 -0.447214 0 0 0 57 'point symmetry operation' ? ? 0.138197 -0.951057 -0.276393 -0.425325 -0.309017 0.850651 -0.894427 0 -0.447214 0 0 0 58 'point symmetry operation' ? ? -0.638197 -0.262866 -0.723607 -0.262866 -0.809017 0.525731 -0.723607 0.525731 0.447214 0 0 0 59 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 0 0 0 60 'point symmetry operation' ? ? -0.138197 0.425325 0.894427 -0.951057 -0.309017 0 0.276393 -0.850651 0.447214 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 N CYS 49 1_555 A SG CYS 114 N CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 86 P CYS 86 1_555 B SG CYS 100 P CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 D SG CYS 49 T CYS 49 1_555 D SG CYS 114 T CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 E SG CYS 86 V CYS 86 1_555 E SG CYS 100 V CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 G SG CYS 49 Z CYS 49 1_555 G SG CYS 114 Z CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 H SG CYS 49 a CYS 49 1_555 H SG CYS 114 a CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 I SG CYS 86 d CYS 86 1_555 I SG CYS 100 d CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 J SG CYS 86 e CYS 86 1_555 J SG CYS 100 e CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C18 H38' _chem_comp.formula_weight 254.494 _chem_comp.id 8K6 _chem_comp.mon_nstd_flag . _chem_comp.name Octadecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-Octadecane # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 8K6 sing 1 n n C2 C3 8K6 sing 2 n n C3 C4 8K6 sing 3 n n C4 C5 8K6 sing 4 n n C5 C6 8K6 sing 5 n n C6 C7 8K6 sing 6 n n C7 C8 8K6 sing 7 n n C8 C9 8K6 sing 8 n n C9 C10 8K6 sing 9 n n C10 C11 8K6 sing 10 n n C11 C12 8K6 sing 11 n n C12 C13 8K6 sing 12 n n C13 C14 8K6 sing 13 n n C14 C15 8K6 sing 14 n n C15 C16 8K6 sing 15 n n C16 C17 8K6 sing 16 n n C17 C18 8K6 sing 17 n n C1 H11C 8K6 sing 18 n n C1 H12C 8K6 sing 19 n n C1 H13C 8K6 sing 20 n n C2 H21C 8K6 sing 21 n n C2 H22C 8K6 sing 22 n n C3 H31C 8K6 sing 23 n n C3 H32C 8K6 sing 24 n n C4 H41C 8K6 sing 25 n n C4 H42C 8K6 sing 26 n n C5 H51C 8K6 sing 27 n n C5 H52C 8K6 sing 28 n n C6 H61C 8K6 sing 29 n n C6 H62C 8K6 sing 30 n n C7 H71C 8K6 sing 31 n n C7 H72C 8K6 sing 32 n n C8 H81C 8K6 sing 33 n n C8 H82C 8K6 sing 34 n n C9 H91C 8K6 sing 35 n n C9 H92C 8K6 sing 36 n n C10 H101 8K6 sing 37 n n C10 H102 8K6 sing 38 n n C11 H111 8K6 sing 39 n n C11 H112 8K6 sing 40 n n C12 H121 8K6 sing 41 n n C12 H122 8K6 sing 42 n n C13 H131 8K6 sing 43 n n C13 H132 8K6 sing 44 n n C14 H141 8K6 sing 45 n n C14 H142 8K6 sing 46 n n C15 H151 8K6 sing 47 n n C15 H152 8K6 sing 48 n n C16 H161 8K6 sing 49 n n C16 H162 8K6 sing 50 n n C17 H171 8K6 sing 51 n n C17 H172 8K6 sing 52 n n C18 H181 8K6 sing 53 n n C18 H182 8K6 sing 54 n n C18 H183 8K6 sing 55 n n # _atom_sites.entry_id 6IMM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id M _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id 8K6 _pdbx_nonpoly_scheme.pdb_strand_id d _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1001 _pdbx_nonpoly_scheme.pdb_mon_id 8K6 _pdbx_nonpoly_scheme.auth_mon_id 8K6 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8K6 . . . M 4 -213.906 -96.034 113.874 1 19.38 ? C1 8K6 1001 d 1 HETATM 2 C C2 8K6 . . . M 4 -212.765 -96.939 114.294 1 25.15 ? C2 8K6 1001 d 1 HETATM 3 C C3 8K6 . . . M 4 -211.916 -97.331 113.119 1 50.84 ? C3 8K6 1001 d 1 HETATM 4 C C4 8K6 . . . M 4 -211.589 -98.758 113.252 1 17.54 ? C4 8K6 1001 d 1 HETATM 5 C C5 8K6 . . . M 4 -211.644 -99.278 111.847 1 16.12 ? C5 8K6 1001 d 1 HETATM 6 C C6 8K6 . . . M 4 -210.596 -98.563 111.01 1 25.74 ? C6 8K6 1001 d 1 HETATM 7 C C7 8K6 . . . M 4 -210.434 -99.341 109.713 1 18.28 ? C7 8K6 1001 d 1 HETATM 8 C C8 8K6 . . . M 4 -209.371 -98.797 108.825 1 26.13 ? C8 8K6 1001 d 1 HETATM 9 C C9 8K6 . . . M 4 -209.618 -99.564 107.581 1 34.99 ? C9 8K6 1001 d 1 HETATM 10 C C10 8K6 . . . M 4 -208.699 -98.998 106.573 1 23.77 ? C10 8K6 1001 d 1 HETATM 11 C C11 8K6 . . . M 4 -208.737 -99.935 105.422 1 18.11 ? C11 8K6 1001 d 1 HETATM 12 C C12 8K6 . . . M 4 -207.437 -100.605 105.234 1 19.67 ? C12 8K6 1001 d 1 HETATM 13 C C13 8K6 . . . M 4 -207.572 -101.493 104.082 1 20.06 ? C13 8K6 1001 d 1 HETATM 14 C C14 8K6 . . . M 4 -206.257 -101.411 103.355 1 21.04 ? C14 8K6 1001 d 1 HETATM 15 C C15 8K6 . . . M 4 -206.034 -102.574 102.426 1 22.25 ? C15 8K6 1001 d 1 HETATM 16 C C16 8K6 . . . M 4 -204.642 -102.57 101.839 1 14.87 ? C16 8K6 1001 d 1 HETATM 17 C C17 8K6 . . . M 4 -204.568 -103.579 100.744 1 16.12 ? C17 8K6 1001 d 1 HETATM 18 C C18 8K6 . . . M 4 -203.545 -103.144 99.766 1 22.04 ? C18 8K6 1001 d 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 18 #