data_6IMY # _model_server_result.job_id kgVSZS48-OxHKfG1_EojRQ _model_server_result.datetime_utc '2024-11-04 20:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6imy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6IMY # _exptl.entry_id 6IMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3,5,6,8,9,11,12,14,15-decahydro-1,4,7,10,13,16-benzohexaoxacyclooctadecine-18-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IMY _cell.length_a 42.925 _cell.length_b 85.015 _cell.length_c 63.834 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -42.925 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H24 O8' _chem_comp.formula_weight 356.368 _chem_comp.id AJU _chem_comp.mon_nstd_flag . _chem_comp.name '2,3,5,6,8,9,11,12,14,15-decahydro-1,4,7,10,13,16-benzohexaoxacyclooctadecine-18-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "4'-Carboxybenzo-18-crown 6-Ether" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAX CAW AJU doub 1 n n CAW OAY AJU sing 2 n n CAW CAV AJU sing 3 n n CAN CAO AJU sing 4 n n CAN OAM AJU sing 5 n n CAO OAP AJU sing 6 n n CAL OAM AJU sing 7 n n CAL CAK AJU sing 8 n n CAU CAV AJU doub 9 n y CAU CAQ AJU sing 10 n y CAV CAT AJU sing 11 n y OAP CAQ AJU sing 12 n n CAK OAJ AJU sing 13 n n CAQ CAR AJU doub 14 n y CAT CAS AJU doub 15 n y OAJ CAI AJU sing 16 n n CAR CAS AJU sing 17 n y CAR OAF AJU sing 18 n n CAI CAH AJU sing 19 n n OAF CAE AJU sing 20 n n CAH OAG AJU sing 21 n n CAE CAD AJU sing 22 n n OAG CAA AJU sing 23 n n OAC CAD AJU sing 24 n n OAC CAB AJU sing 25 n n CAA CAB AJU sing 26 n n OAY H1 AJU sing 27 n n CAU H2 AJU sing 28 n n CAO H3 AJU sing 29 n n CAO H4 AJU sing 30 n n CAN H5 AJU sing 31 n n CAN H6 AJU sing 32 n n CAL H7 AJU sing 33 n n CAL H8 AJU sing 34 n n CAK H9 AJU sing 35 n n CAK H10 AJU sing 36 n n CAI H11 AJU sing 37 n n CAI H12 AJU sing 38 n n CAH H13 AJU sing 39 n n CAH H14 AJU sing 40 n n CAA H15 AJU sing 41 n n CAA H16 AJU sing 42 n n CAB H17 AJU sing 43 n n CAB H18 AJU sing 44 n n CAD H19 AJU sing 45 n n CAD H20 AJU sing 46 n n CAE H21 AJU sing 47 n n CAE H22 AJU sing 48 n n CAS H23 AJU sing 49 n n CAT H24 AJU sing 50 n n # _atom_sites.entry_id 6IMY _atom_sites.fract_transf_matrix[1][1] 0.023296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AJU A 1 201 202 AJU DRG . D 2 AJU B 1 201 201 AJU DRG . E 3 HOH A 1 301 96 HOH HOH . E 3 HOH A 2 302 83 HOH HOH . E 3 HOH A 3 303 59 HOH HOH . E 3 HOH A 4 304 57 HOH HOH . E 3 HOH A 5 305 79 HOH HOH . E 3 HOH A 6 306 123 HOH HOH . E 3 HOH A 7 307 14 HOH HOH . E 3 HOH A 8 308 86 HOH HOH . E 3 HOH A 9 309 133 HOH HOH . E 3 HOH A 10 310 165 HOH HOH . E 3 HOH A 11 311 160 HOH HOH . E 3 HOH A 12 312 63 HOH HOH . E 3 HOH A 13 313 169 HOH HOH . E 3 HOH A 14 314 76 HOH HOH . E 3 HOH A 15 315 222 HOH HOH . E 3 HOH A 16 316 207 HOH HOH . E 3 HOH A 17 317 12 HOH HOH . E 3 HOH A 18 318 88 HOH HOH . E 3 HOH A 19 319 130 HOH HOH . E 3 HOH A 20 320 60 HOH HOH . E 3 HOH A 21 321 200 HOH HOH . E 3 HOH A 22 322 114 HOH HOH . E 3 HOH A 23 323 62 HOH HOH . E 3 HOH A 24 324 188 HOH HOH . E 3 HOH A 25 325 35 HOH HOH . E 3 HOH A 26 326 140 HOH HOH . E 3 HOH A 27 327 2 HOH HOH . E 3 HOH A 28 328 90 HOH HOH . E 3 HOH A 29 329 127 HOH HOH . E 3 HOH A 30 330 22 HOH HOH . E 3 HOH A 31 331 20 HOH HOH . E 3 HOH A 32 332 73 HOH HOH . E 3 HOH A 33 333 192 HOH HOH . E 3 HOH A 34 334 39 HOH HOH . E 3 HOH A 35 335 143 HOH HOH . E 3 HOH A 36 336 25 HOH HOH . E 3 HOH A 37 337 54 HOH HOH . E 3 HOH A 38 338 32 HOH HOH . E 3 HOH A 39 339 149 HOH HOH . E 3 HOH A 40 340 68 HOH HOH . E 3 HOH A 41 341 194 HOH HOH . E 3 HOH A 42 342 8 HOH HOH . E 3 HOH A 43 343 145 HOH HOH . E 3 HOH A 44 344 16 HOH HOH . E 3 HOH A 45 345 6 HOH HOH . E 3 HOH A 46 346 24 HOH HOH . E 3 HOH A 47 347 45 HOH HOH . E 3 HOH A 48 348 180 HOH HOH . E 3 HOH A 49 349 174 HOH HOH . E 3 HOH A 50 350 162 HOH HOH . E 3 HOH A 51 351 15 HOH HOH . E 3 HOH A 52 352 3 HOH HOH . E 3 HOH A 53 353 47 HOH HOH . E 3 HOH A 54 354 33 HOH HOH . E 3 HOH A 55 355 55 HOH HOH . E 3 HOH A 56 356 71 HOH HOH . E 3 HOH A 57 357 203 HOH HOH . E 3 HOH A 58 358 5 HOH HOH . E 3 HOH A 59 359 69 HOH HOH . E 3 HOH A 60 360 142 HOH HOH . E 3 HOH A 61 361 150 HOH HOH . E 3 HOH A 62 362 17 HOH HOH . E 3 HOH A 63 363 87 HOH HOH . E 3 HOH A 64 364 199 HOH HOH . E 3 HOH A 65 365 156 HOH HOH . E 3 HOH A 66 366 38 HOH HOH . E 3 HOH A 67 367 49 HOH HOH . E 3 HOH A 68 368 56 HOH HOH . E 3 HOH A 69 369 27 HOH HOH . E 3 HOH A 70 370 37 HOH HOH . E 3 HOH A 71 371 216 HOH HOH . E 3 HOH A 72 372 157 HOH HOH . E 3 HOH A 73 373 185 HOH HOH . E 3 HOH A 74 374 138 HOH HOH . E 3 HOH A 75 375 137 HOH HOH . E 3 HOH A 76 376 136 HOH HOH . E 3 HOH A 77 377 173 HOH HOH . E 3 HOH A 78 378 85 HOH HOH . E 3 HOH A 79 379 210 HOH HOH . E 3 HOH A 80 380 231 HOH HOH . E 3 HOH A 81 381 195 HOH HOH . E 3 HOH A 82 382 13 HOH HOH . E 3 HOH A 83 383 131 HOH HOH . E 3 HOH A 84 384 148 HOH HOH . E 3 HOH A 85 385 182 HOH HOH . E 3 HOH A 86 386 171 HOH HOH . E 3 HOH A 87 387 91 HOH HOH . E 3 HOH A 88 388 227 HOH HOH . E 3 HOH A 89 389 155 HOH HOH . E 3 HOH A 90 390 202 HOH HOH . E 3 HOH A 91 391 122 HOH HOH . E 3 HOH A 92 392 111 HOH HOH . E 3 HOH A 93 393 104 HOH HOH . E 3 HOH A 94 394 119 HOH HOH . E 3 HOH A 95 395 220 HOH HOH . E 3 HOH A 96 396 31 HOH HOH . E 3 HOH A 97 397 213 HOH HOH . E 3 HOH A 98 398 236 HOH HOH . E 3 HOH A 99 399 196 HOH HOH . E 3 HOH A 100 400 197 HOH HOH . E 3 HOH A 101 401 105 HOH HOH . E 3 HOH A 102 402 198 HOH HOH . E 3 HOH A 103 403 106 HOH HOH . E 3 HOH A 104 404 193 HOH HOH . E 3 HOH A 105 405 97 HOH HOH . E 3 HOH A 106 406 115 HOH HOH . E 3 HOH A 107 407 72 HOH HOH . E 3 HOH A 108 408 166 HOH HOH . E 3 HOH A 109 409 183 HOH HOH . E 3 HOH A 110 410 191 HOH HOH . E 3 HOH A 111 411 99 HOH HOH . E 3 HOH A 112 412 214 HOH HOH . E 3 HOH A 113 413 70 HOH HOH . E 3 HOH A 114 414 164 HOH HOH . E 3 HOH A 115 415 201 HOH HOH . E 3 HOH A 116 416 206 HOH HOH . F 3 HOH B 1 301 82 HOH HOH . F 3 HOH B 2 302 30 HOH HOH . F 3 HOH B 3 303 163 HOH HOH . F 3 HOH B 4 304 146 HOH HOH . F 3 HOH B 5 305 64 HOH HOH . F 3 HOH B 6 306 128 HOH HOH . F 3 HOH B 7 307 208 HOH HOH . F 3 HOH B 8 308 118 HOH HOH . F 3 HOH B 9 309 52 HOH HOH . F 3 HOH B 10 310 94 HOH HOH . F 3 HOH B 11 311 223 HOH HOH . F 3 HOH B 12 312 186 HOH HOH . F 3 HOH B 13 313 204 HOH HOH . F 3 HOH B 14 314 92 HOH HOH . F 3 HOH B 15 315 219 HOH HOH . F 3 HOH B 16 316 139 HOH HOH . F 3 HOH B 17 317 121 HOH HOH . F 3 HOH B 18 318 98 HOH HOH . F 3 HOH B 19 319 18 HOH HOH . F 3 HOH B 20 320 100 HOH HOH . F 3 HOH B 21 321 10 HOH HOH . F 3 HOH B 22 322 1 HOH HOH . F 3 HOH B 23 323 75 HOH HOH . F 3 HOH B 24 324 43 HOH HOH . F 3 HOH B 25 325 42 HOH HOH . F 3 HOH B 26 326 103 HOH HOH . F 3 HOH B 27 327 101 HOH HOH . F 3 HOH B 28 328 40 HOH HOH . F 3 HOH B 29 329 28 HOH HOH . F 3 HOH B 30 330 177 HOH HOH . F 3 HOH B 31 331 11 HOH HOH . F 3 HOH B 32 332 9 HOH HOH . F 3 HOH B 33 333 67 HOH HOH . F 3 HOH B 34 334 65 HOH HOH . F 3 HOH B 35 335 51 HOH HOH . F 3 HOH B 36 336 58 HOH HOH . F 3 HOH B 37 337 217 HOH HOH . F 3 HOH B 38 338 7 HOH HOH . F 3 HOH B 39 339 112 HOH HOH . F 3 HOH B 40 340 134 HOH HOH . F 3 HOH B 41 341 44 HOH HOH . F 3 HOH B 42 342 78 HOH HOH . F 3 HOH B 43 343 4 HOH HOH . F 3 HOH B 44 344 153 HOH HOH . F 3 HOH B 45 345 66 HOH HOH . F 3 HOH B 46 346 172 HOH HOH . F 3 HOH B 47 347 179 HOH HOH . F 3 HOH B 48 348 215 HOH HOH . F 3 HOH B 49 349 41 HOH HOH . F 3 HOH B 50 350 93 HOH HOH . F 3 HOH B 51 351 218 HOH HOH . F 3 HOH B 52 352 102 HOH HOH . F 3 HOH B 53 353 132 HOH HOH . F 3 HOH B 54 354 226 HOH HOH . F 3 HOH B 55 355 26 HOH HOH . F 3 HOH B 56 356 141 HOH HOH . F 3 HOH B 57 357 53 HOH HOH . F 3 HOH B 58 358 129 HOH HOH . F 3 HOH B 59 359 110 HOH HOH . F 3 HOH B 60 360 80 HOH HOH . F 3 HOH B 61 361 95 HOH HOH . F 3 HOH B 62 362 187 HOH HOH . F 3 HOH B 63 363 50 HOH HOH . F 3 HOH B 64 364 23 HOH HOH . F 3 HOH B 65 365 89 HOH HOH . F 3 HOH B 66 366 229 HOH HOH . F 3 HOH B 67 367 61 HOH HOH . F 3 HOH B 68 368 77 HOH HOH . F 3 HOH B 69 369 19 HOH HOH . F 3 HOH B 70 370 212 HOH HOH . F 3 HOH B 71 371 34 HOH HOH . F 3 HOH B 72 372 224 HOH HOH . F 3 HOH B 73 373 228 HOH HOH . F 3 HOH B 74 374 21 HOH HOH . F 3 HOH B 75 375 48 HOH HOH . F 3 HOH B 76 376 170 HOH HOH . F 3 HOH B 77 377 190 HOH HOH . F 3 HOH B 78 378 161 HOH HOH . F 3 HOH B 79 379 189 HOH HOH . F 3 HOH B 80 380 81 HOH HOH . F 3 HOH B 81 381 46 HOH HOH . F 3 HOH B 82 382 147 HOH HOH . F 3 HOH B 83 383 29 HOH HOH . F 3 HOH B 84 384 125 HOH HOH . F 3 HOH B 85 385 158 HOH HOH . F 3 HOH B 86 386 109 HOH HOH . F 3 HOH B 87 387 221 HOH HOH . F 3 HOH B 88 388 159 HOH HOH . F 3 HOH B 89 389 108 HOH HOH . F 3 HOH B 90 390 184 HOH HOH . F 3 HOH B 91 391 178 HOH HOH . F 3 HOH B 92 392 205 HOH HOH . F 3 HOH B 93 393 234 HOH HOH . F 3 HOH B 94 394 151 HOH HOH . F 3 HOH B 95 395 181 HOH HOH . F 3 HOH B 96 396 175 HOH HOH . F 3 HOH B 97 397 211 HOH HOH . F 3 HOH B 98 398 230 HOH HOH . F 3 HOH B 99 399 152 HOH HOH . F 3 HOH B 100 400 176 HOH HOH . F 3 HOH B 101 401 116 HOH HOH . F 3 HOH B 102 402 74 HOH HOH . F 3 HOH B 103 403 84 HOH HOH . F 3 HOH B 104 404 36 HOH HOH . F 3 HOH B 105 405 113 HOH HOH . F 3 HOH B 106 406 126 HOH HOH . F 3 HOH B 107 407 232 HOH HOH . F 3 HOH B 108 408 117 HOH HOH . F 3 HOH B 109 409 124 HOH HOH . F 3 HOH B 110 410 209 HOH HOH . F 3 HOH B 111 411 233 HOH HOH . F 3 HOH B 112 412 235 HOH HOH . F 3 HOH B 113 413 120 HOH HOH . F 3 HOH B 114 414 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAX AJU . . . D 2 -38.948 -4.702 -22.444 0.5 18.39 ? OAX AJU 201 B 1 HETATM 2 C CAW AJU . . . D 2 -38.887 -5.063 -21.242 0.5 20.65 ? CAW AJU 201 B 1 HETATM 3 O OAY AJU . . . D 2 -38.516 -6.221 -20.953 0.5 20.44 ? OAY AJU 201 B 1 HETATM 4 C CAV AJU . . . D 2 -39.255 -4.18 -20.229 0.5 14.24 ? CAV AJU 201 B 1 HETATM 5 C CAU AJU . . . D 2 -40.033 -3.069 -20.532 0.5 13 ? CAU AJU 201 B 1 HETATM 6 C CAQ AJU . . . D 2 -40.39 -2.194 -19.512 0.5 18.82 ? CAQ AJU 201 B 1 HETATM 7 O OAP AJU . . . D 2 -41.157 -1.081 -19.72 0.5 18.22 ? OAP AJU 201 B 1 HETATM 8 C CAO AJU . . . D 2 -41.598 -0.969 -21.077 0.5 15.6 ? CAO AJU 201 B 1 HETATM 9 C CAN AJU . . . D 2 -42.643 0.126 -21.164 0.5 17.5 ? CAN AJU 201 B 1 HETATM 10 O OAM AJU . . . D 2 -43.685 -0.163 -20.216 0.5 16.58 ? OAM AJU 201 B 1 HETATM 11 C CAL AJU . . . D 2 -44.946 0.42 -20.614 0.5 22.97 ? CAL AJU 201 B 1 HETATM 12 C CAK AJU . . . D 2 -45.433 1.435 -19.59 0.5 23.44 ? CAK AJU 201 B 1 HETATM 13 O OAJ AJU . . . D 2 -45.547 0.831 -18.285 0.5 19.37 ? OAJ AJU 201 B 1 HETATM 14 C CAI AJU . . . D 2 -45.859 1.869 -17.34 0.5 18.04 ? CAI AJU 201 B 1 HETATM 15 C CAH AJU . . . D 2 -45.524 1.414 -15.927 0.5 20.59 ? CAH AJU 201 B 1 HETATM 16 O OAG AJU . . . D 2 -44.114 1.12 -15.818 0.5 24.35 ? OAG AJU 201 B 1 HETATM 17 C CAA AJU . . . D 2 -43.81 0.806 -14.444 0.5 22.27 ? CAA AJU 201 B 1 HETATM 18 C CAB AJU . . . D 2 -42.32 0.551 -14.273 0.5 22.62 ? CAB AJU 201 B 1 HETATM 19 O OAC AJU . . . D 2 -41.933 -0.565 -15.085 0.5 20.21 ? OAC AJU 201 B 1 HETATM 20 C CAD AJU . . . D 2 -40.512 -0.789 -14.965 0.5 18.76 ? CAD AJU 201 B 1 HETATM 21 C CAE AJU . . . D 2 -40.093 -1.906 -15.921 0.5 18.2 ? CAE AJU 201 B 1 HETATM 22 O OAF AJU . . . D 2 -40.398 -1.512 -17.27 0.5 16.03 ? OAF AJU 201 B 1 HETATM 23 C CAR AJU . . . D 2 -39.986 -2.424 -18.203 0.5 15.19 ? CAR AJU 201 B 1 HETATM 24 C CAS AJU . . . D 2 -39.213 -3.539 -17.897 0.5 14.77 ? CAS AJU 201 B 1 HETATM 25 C CAT AJU . . . D 2 -38.851 -4.42 -18.917 0.5 15.3 ? CAT AJU 201 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #