data_6IMZ # _model_server_result.job_id wqVcMBciU7YH8f6O61H2-A _model_server_result.datetime_utc '2024-10-10 23:27:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6imz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6IMZ # _exptl.entry_id 6IMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.337 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IMZ _cell.length_a 66.434 _cell.length_b 66.434 _cell.length_c 140.182 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 40 A GLU 41 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 A OE2 GLU 40 A GLU 41 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc3 A ND1 HIS 64 A HIS 65 1_555 G ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 A OD2 ASP 81 A ASP 82 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 A NE2 HIS 83 A HIS 84 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 A SG CYS 86 A CYS 87 1_555 G ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 A ND1 HIS 158 A HIS 159 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A NE2 HIS 160 A HIS 161 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc9 A NE2 HIS 161 A HIS 162 1_555 C ZN ZN . A ZN 202 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc10 A NE2 HIS 162 A HIS 163 1_555 C ZN ZN . A ZN 202 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc11 A NE2 HIS 163 A HIS 164 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc12 G ZN ZN . A ZN 206 1_555 I O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C21 H22 Cl2 F N5 O' _chem_comp.formula_weight 450.337 _chem_comp.id VGH _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRIZOTINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C13 VGH sing 422 n n C13 C3 VGH sing 423 n y C13 C17 VGH doub 424 n y C3 C2 VGH doub 425 n y C2 C12 VGH sing 426 n y C12 F VGH sing 427 n n C12 C18 VGH doub 428 n y C17 C18 VGH sing 429 n y C17 C21 VGH sing 430 n n C18 CL2 VGH sing 431 n n C21 C1 VGH sing 432 n n C21 O27 VGH sing 433 n n O27 C15 VGH sing 434 n n C15 C4 VGH doub 435 n y C15 C19 VGH sing 436 n y C4 C14 VGH sing 437 n y C19 N22 VGH sing 438 n n C19 N23 VGH doub 439 n y N23 C5 VGH sing 440 n y C5 C14 VGH doub 441 n y C14 C16 VGH sing 442 n y C16 C6 VGH sing 443 n y C16 C7 VGH doub 444 n y C6 N24 VGH doub 445 n y C7 N26 VGH sing 446 n y N26 N24 VGH sing 447 n y N26 C20 VGH sing 448 n n C20 C8 VGH sing 449 n n C20 C9 VGH sing 450 n n C8 C10 VGH sing 451 n n C10 N25 VGH sing 452 n n N25 C11 VGH sing 453 n n C11 C9 VGH sing 454 n n C3 H3 VGH sing 455 n n C2 H2 VGH sing 456 n n C21 H21 VGH sing 457 n n C1 H11C VGH sing 458 n n C1 H12C VGH sing 459 n n C1 H13C VGH sing 460 n n C4 H4 VGH sing 461 n n N22 H221 VGH sing 462 n n N22 H222 VGH sing 463 n n C5 H5 VGH sing 464 n n C6 H6 VGH sing 465 n n C7 H7 VGH sing 466 n n C20 H20 VGH sing 467 n n C8 H81C VGH sing 468 n n C8 H82C VGH sing 469 n n C9 H91C VGH sing 470 n n C9 H92C VGH sing 471 n n C10 H101 VGH sing 472 n n C10 H102 VGH sing 473 n n N25 H25 VGH sing 474 n n C11 H111 VGH sing 475 n n C11 H112 VGH sing 476 n n # _atom_sites.entry_id 6IMZ _atom_sites.fract_transf_matrix[1][1] 0.015053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 202 ZN ZN . C 2 ZN A 1 202 203 ZN ZN . D 3 SO4 A 1 203 204 SO4 SO4 . E 4 O4B A 1 204 200 O4B O4B . F 5 VGH A 1 205 201 VGH DRG . G 2 ZN A 1 206 205 ZN ZN . H 4 O4B A 1 207 199 O4B O4B . I 6 HOH A 1 301 40 HOH HOH . I 6 HOH A 2 302 54 HOH HOH . I 6 HOH A 3 303 28 HOH HOH . I 6 HOH A 4 304 50 HOH HOH . I 6 HOH A 5 305 17 HOH HOH . I 6 HOH A 6 306 22 HOH HOH . I 6 HOH A 7 307 29 HOH HOH . I 6 HOH A 8 308 34 HOH HOH . I 6 HOH A 9 309 61 HOH HOH . I 6 HOH A 10 310 21 HOH HOH . I 6 HOH A 11 311 20 HOH HOH . I 6 HOH A 12 312 39 HOH HOH . I 6 HOH A 13 313 57 HOH HOH . I 6 HOH A 14 314 36 HOH HOH . I 6 HOH A 15 315 51 HOH HOH . I 6 HOH A 16 316 26 HOH HOH . I 6 HOH A 17 317 1 HOH HOH . I 6 HOH A 18 318 60 HOH HOH . I 6 HOH A 19 319 33 HOH HOH . I 6 HOH A 20 320 9 HOH HOH . I 6 HOH A 21 321 4 HOH HOH . I 6 HOH A 22 322 10 HOH HOH . I 6 HOH A 23 323 41 HOH HOH . I 6 HOH A 24 324 23 HOH HOH . I 6 HOH A 25 325 18 HOH HOH . I 6 HOH A 26 326 13 HOH HOH . I 6 HOH A 27 327 16 HOH HOH . I 6 HOH A 28 328 24 HOH HOH . I 6 HOH A 29 329 35 HOH HOH . I 6 HOH A 30 330 14 HOH HOH . I 6 HOH A 31 331 62 HOH HOH . I 6 HOH A 32 332 7 HOH HOH . I 6 HOH A 33 333 19 HOH HOH . I 6 HOH A 34 334 15 HOH HOH . I 6 HOH A 35 335 48 HOH HOH . I 6 HOH A 36 336 6 HOH HOH . I 6 HOH A 37 337 8 HOH HOH . I 6 HOH A 38 338 2 HOH HOH . I 6 HOH A 39 339 38 HOH HOH . I 6 HOH A 40 340 25 HOH HOH . I 6 HOH A 41 341 27 HOH HOH . I 6 HOH A 42 342 47 HOH HOH . I 6 HOH A 43 343 30 HOH HOH . I 6 HOH A 44 344 5 HOH HOH . I 6 HOH A 45 345 32 HOH HOH . I 6 HOH A 46 346 42 HOH HOH . I 6 HOH A 47 347 44 HOH HOH . I 6 HOH A 48 348 46 HOH HOH . I 6 HOH A 49 349 49 HOH HOH . I 6 HOH A 50 350 55 HOH HOH . I 6 HOH A 51 351 52 HOH HOH . I 6 HOH A 52 352 11 HOH HOH . I 6 HOH A 53 353 59 HOH HOH . I 6 HOH A 54 354 3 HOH HOH . I 6 HOH A 55 355 43 HOH HOH . I 6 HOH A 56 356 56 HOH HOH . I 6 HOH A 57 357 12 HOH HOH . I 6 HOH A 58 358 31 HOH HOH . I 6 HOH A 59 359 58 HOH HOH . I 6 HOH A 60 360 37 HOH HOH . I 6 HOH A 61 361 53 HOH HOH . I 6 HOH A 62 362 64 HOH HOH . I 6 HOH A 63 363 45 HOH HOH . I 6 HOH A 64 364 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL VGH . A . F 5 25.381 -14.491 19.582 0.5 64.25 ? CL VGH 205 A 1 HETATM 2 CL CL VGH . B . F 5 20.77 -13.925 16.729 0.5 51.11 ? CL VGH 205 A 1 HETATM 3 C C13 VGH . A . F 5 24.418 -14.683 18.139 0.5 51.03 ? C13 VGH 205 A 1 HETATM 4 C C13 VGH . B . F 5 22.395 -14.461 16.85 0.5 47.52 ? C13 VGH 205 A 1 HETATM 5 C C3 VGH . A . F 5 24.999 -15.36 17.074 0.5 49.69 ? C3 VGH 205 A 1 HETATM 6 C C3 VGH . B . F 5 22.981 -15.153 15.799 0.5 46.14 ? C3 VGH 205 A 1 HETATM 7 C C2 VGH . A . F 5 24.298 -15.555 15.893 0.5 46.13 ? C2 VGH 205 A 1 HETATM 8 C C2 VGH . B . F 5 24.296 -15.58 15.911 0.5 46.13 ? C2 VGH 205 A 1 HETATM 9 C C12 VGH . A . F 5 23.006 -15.066 15.766 0.5 46.14 ? C12 VGH 205 A 1 HETATM 10 C C12 VGH . B . F 5 25.018 -15.317 17.066 0.5 49.69 ? C12 VGH 205 A 1 HETATM 11 F F VGH . A . F 5 22.307 -15.248 14.606 0.5 42.42 ? F VGH 205 A 1 HETATM 12 F F VGH . B . F 5 26.3 -15.734 17.174 0.5 54.07 ? F VGH 205 A 1 HETATM 13 C C17 VGH . A . F 5 23.113 -14.188 18.011 0.5 47.57 ? C17 VGH 205 A 1 HETATM 14 C C17 VGH . B . F 5 23.106 -14.193 18.01 0.5 47.57 ? C17 VGH 205 A 1 HETATM 15 C C18 VGH . A . F 5 22.423 -14.386 16.825 0.5 47.51 ? C18 VGH 205 A 1 HETATM 16 C C18 VGH . B . F 5 24.432 -14.629 18.12 0.5 51.02 ? C18 VGH 205 A 1 HETATM 17 CL CL2 VGH . A . F 5 20.831 -13.777 16.684 0.5 51.03 ? CL2 VGH 205 A 1 HETATM 18 CL CL2 VGH . B . F 5 25.415 -14.346 19.529 0.5 64.2 ? CL2 VGH 205 A 1 HETATM 19 C C21 VGH . . . F 5 22.422 -13.492 19.012 1 50.04 ? C21 VGH 205 A 1 HETATM 20 C C1 VGH . . . F 5 22.11 -14.417 20.203 1 48.02 ? C1 VGH 205 A 1 HETATM 21 O O27 VGH . . . F 5 23.123 -12.318 19.439 1 48.16 ? O27 VGH 205 A 1 HETATM 22 C C15 VGH . . . F 5 23.568 -11.412 18.518 1 46.83 ? C15 VGH 205 A 1 HETATM 23 C C4 VGH . . . F 5 24.887 -11.429 18.099 1 47.84 ? C4 VGH 205 A 1 HETATM 24 C C19 VGH . . . F 5 22.705 -10.422 18.052 1 48.69 ? C19 VGH 205 A 1 HETATM 25 N N22 VGH . . . F 5 21.449 -10.437 18.5 1 40.34 ? N22 VGH 205 A 1 HETATM 26 N N23 VGH . . . F 5 23.141 -9.5 17.172 1 41.81 ? N23 VGH 205 A 1 HETATM 27 C C5 VGH . . . F 5 24.481 -9.522 16.717 1 44.13 ? C5 VGH 205 A 1 HETATM 28 C C14 VGH . . . F 5 25.356 -10.494 17.197 1 45.15 ? C14 VGH 205 A 1 HETATM 29 C C16 VGH . . . F 5 26.629 -10.616 16.816 1 47.01 ? C16 VGH 205 A 1 HETATM 30 C C6 VGH . . . F 5 27.22 -11.794 16.676 1 45.18 ? C6 VGH 205 A 1 HETATM 31 C C7 VGH . . . F 5 27.51 -9.672 16.516 1 47.05 ? C7 VGH 205 A 1 HETATM 32 N N26 VGH . . . F 5 28.638 -10.325 16.19 1 49.71 ? N26 VGH 205 A 1 HETATM 33 N N24 VGH . . . F 5 28.467 -11.544 16.286 1 44.89 ? N24 VGH 205 A 1 HETATM 34 C C20 VGH . . . F 5 29.96 -9.787 15.765 1 47.43 ? C20 VGH 205 A 1 HETATM 35 C C8 VGH . . . F 5 30.586 -10.704 14.721 1 50.23 ? C8 VGH 205 A 1 HETATM 36 C C10 VGH . . . F 5 31.899 -10.1 14.23 1 49.7 ? C10 VGH 205 A 1 HETATM 37 N N25 VGH . . . F 5 32.259 -8.896 14.994 1 43.49 ? N25 VGH 205 A 1 HETATM 38 C C11 VGH . . . F 5 32.296 -9.203 16.432 1 46.78 ? C11 VGH 205 A 1 HETATM 39 C C9 VGH . . . F 5 30.92 -9.646 16.937 1 45.77 ? C9 VGH 205 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #