data_6INE # _model_server_result.job_id fsCquA_jOrSSPhqQ4shlKQ _model_server_result.datetime_utc '2024-11-20 04:41:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ine # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2304}' # _entry.id 6INE # _exptl.entry_id 6INE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6INE _cell.length_a 73.12 _cell.length_b 73.12 _cell.length_c 202.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6INE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 70 A CYS 2091 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A SG CYS 72 A CYS 2093 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A SG CYS 83 A CYS 2104 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 A SG CYS 83 A CYS 2104 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc5 A SG CYS 87 A CYS 2108 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc6 A SG CYS 96 A CYS 2117 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc7 A SG CYS 101 A CYS 2122 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 A SG CYS 107 A CYS 2128 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc9 A SG CYS 199 A CYS 2220 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc10 A SG CYS 247 A CYS 2268 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 A SG CYS 249 A CYS 2270 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A SG CYS 254 A CYS 2275 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 290 n n N HN1 SAM sing 291 n n N HN2 SAM sing 292 n n CA C SAM sing 293 n n CA CB SAM sing 294 n n CA HA SAM sing 295 n n C O SAM doub 296 n n C OXT SAM sing 297 n n CB CG SAM sing 298 n n CB HB1 SAM sing 299 n n CB HB2 SAM sing 300 n n CG SD SAM sing 301 n n CG HG1 SAM sing 302 n n CG HG2 SAM sing 303 n n SD CE SAM sing 304 n n SD C5' SAM sing 305 n n CE HE1 SAM sing 306 n n CE HE2 SAM sing 307 n n CE HE3 SAM sing 308 n n C5' C4' SAM sing 309 n n C5' "H5'1" SAM sing 310 n n C5' "H5'2" SAM sing 311 n n C4' O4' SAM sing 312 n n C4' C3' SAM sing 313 n n C4' H4' SAM sing 314 n n O4' C1' SAM sing 315 n n C3' O3' SAM sing 316 n n C3' C2' SAM sing 317 n n C3' H3' SAM sing 318 n n O3' HO3' SAM sing 319 n n C2' O2' SAM sing 320 n n C2' C1' SAM sing 321 n n C2' H2' SAM sing 322 n n O2' HO2' SAM sing 323 n n C1' N9 SAM sing 324 n n C1' H1' SAM sing 325 n n N9 C8 SAM sing 326 n y N9 C4 SAM sing 327 n y C8 N7 SAM doub 328 n y C8 H8 SAM sing 329 n n N7 C5 SAM sing 330 n y C5 C6 SAM sing 331 n y C5 C4 SAM doub 332 n y C6 N6 SAM sing 333 n n C6 N1 SAM doub 334 n y N6 HN61 SAM sing 335 n n N6 HN62 SAM sing 336 n n N1 C2 SAM sing 337 n y C2 N3 SAM doub 338 n y C2 H2 SAM sing 339 n n N3 C4 SAM sing 340 n y # _atom_sites.entry_id 6INE _atom_sites.fract_transf_matrix[1][1] 0.013676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 2301 1 ZN ZN . D 3 ZN A 1 2302 2 ZN ZN . E 3 ZN A 1 2303 3 ZN ZN . F 4 SAM A 1 2304 1 SAM SAM . G 5 GOL B 1 401 401 GOL GOL . H 6 HOH A 1 2401 80 HOH HOH . H 6 HOH A 2 2402 41 HOH HOH . H 6 HOH A 3 2403 54 HOH HOH . H 6 HOH A 4 2404 74 HOH HOH . H 6 HOH A 5 2405 81 HOH HOH . H 6 HOH A 6 2406 10 HOH HOH . H 6 HOH A 7 2407 45 HOH HOH . H 6 HOH A 8 2408 63 HOH HOH . H 6 HOH A 9 2409 6 HOH HOH . H 6 HOH A 10 2410 23 HOH HOH . H 6 HOH A 11 2411 31 HOH HOH . H 6 HOH A 12 2412 3 HOH HOH . H 6 HOH A 13 2413 47 HOH HOH . H 6 HOH A 14 2414 88 HOH HOH . H 6 HOH A 15 2415 24 HOH HOH . H 6 HOH A 16 2416 26 HOH HOH . H 6 HOH A 17 2417 20 HOH HOH . H 6 HOH A 18 2418 75 HOH HOH . H 6 HOH A 19 2419 12 HOH HOH . H 6 HOH A 20 2420 71 HOH HOH . H 6 HOH A 21 2421 29 HOH HOH . H 6 HOH A 22 2422 28 HOH HOH . H 6 HOH A 23 2423 59 HOH HOH . H 6 HOH A 24 2424 8 HOH HOH . H 6 HOH A 25 2425 64 HOH HOH . H 6 HOH A 26 2426 52 HOH HOH . H 6 HOH A 27 2427 16 HOH HOH . H 6 HOH A 28 2428 27 HOH HOH . H 6 HOH A 29 2429 42 HOH HOH . H 6 HOH A 30 2430 35 HOH HOH . H 6 HOH A 31 2431 37 HOH HOH . H 6 HOH A 32 2432 55 HOH HOH . H 6 HOH A 33 2433 76 HOH HOH . H 6 HOH A 34 2434 58 HOH HOH . H 6 HOH A 35 2435 50 HOH HOH . H 6 HOH A 36 2436 57 HOH HOH . H 6 HOH A 37 2437 69 HOH HOH . H 6 HOH A 38 2438 19 HOH HOH . I 6 HOH B 1 501 87 HOH HOH . I 6 HOH B 2 502 46 HOH HOH . I 6 HOH B 3 503 67 HOH HOH . I 6 HOH B 4 504 14 HOH HOH . I 6 HOH B 5 505 36 HOH HOH . I 6 HOH B 6 506 48 HOH HOH . I 6 HOH B 7 507 39 HOH HOH . I 6 HOH B 8 508 17 HOH HOH . I 6 HOH B 9 509 5 HOH HOH . I 6 HOH B 10 510 9 HOH HOH . I 6 HOH B 11 511 11 HOH HOH . I 6 HOH B 12 512 1 HOH HOH . I 6 HOH B 13 513 22 HOH HOH . I 6 HOH B 14 514 7 HOH HOH . I 6 HOH B 15 515 2 HOH HOH . I 6 HOH B 16 516 21 HOH HOH . I 6 HOH B 17 517 18 HOH HOH . I 6 HOH B 18 518 13 HOH HOH . I 6 HOH B 19 519 4 HOH HOH . I 6 HOH B 20 520 79 HOH HOH . I 6 HOH B 21 521 38 HOH HOH . I 6 HOH B 22 522 61 HOH HOH . I 6 HOH B 23 523 43 HOH HOH . I 6 HOH B 24 524 32 HOH HOH . I 6 HOH B 25 525 34 HOH HOH . I 6 HOH B 26 526 65 HOH HOH . I 6 HOH B 27 527 25 HOH HOH . I 6 HOH B 28 528 78 HOH HOH . I 6 HOH B 29 529 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . F 4 -47.233 0.941 -3.113 1 45.72 ? N SAM 2304 A 1 HETATM 2 C CA SAM . . . F 4 -46.997 2.199 -3.815 1 47.49 ? CA SAM 2304 A 1 HETATM 3 C C SAM . . . F 4 -47.783 2.286 -5.127 1 46.14 ? C SAM 2304 A 1 HETATM 4 O O SAM . . . F 4 -47.441 3.056 -6.027 1 44.94 ? O SAM 2304 A 1 HETATM 5 O OXT SAM . . . F 4 -48.785 1.593 -5.321 1 45.44 ? OXT SAM 2304 A 1 HETATM 6 C CB SAM . . . F 4 -45.502 2.378 -4.073 1 48.22 ? CB SAM 2304 A 1 HETATM 7 C CG SAM . . . F 4 -44.741 3.05 -2.934 1 49.16 ? CG SAM 2304 A 1 HETATM 8 S SD SAM . . . F 4 -45.117 4.819 -2.813 1 51.2 ? SD SAM 2304 A 1 HETATM 9 C CE SAM . . . F 4 -43.464 5.559 -2.802 1 52.44 ? CE SAM 2304 A 1 HETATM 10 C C5' SAM . . . F 4 -45.558 4.997 -1.066 1 51.12 ? C5' SAM 2304 A 1 HETATM 11 C C4' SAM . . . F 4 -47.029 4.702 -0.805 1 51.72 ? C4' SAM 2304 A 1 HETATM 12 O O4' SAM . . . F 4 -47.25 3.302 -0.773 1 50.09 ? O4' SAM 2304 A 1 HETATM 13 C C3' SAM . . . F 4 -47.496 5.267 0.527 1 53.29 ? C3' SAM 2304 A 1 HETATM 14 O O3' SAM . . . F 4 -48.171 6.486 0.337 1 57.24 ? O3' SAM 2304 A 1 HETATM 15 C C2' SAM . . . F 4 -48.453 4.225 1.047 1 49.98 ? C2' SAM 2304 A 1 HETATM 16 O O2' SAM . . . F 4 -49.751 4.542 0.61 1 48.67 ? O2' SAM 2304 A 1 HETATM 17 C C1' SAM . . . F 4 -48.024 2.951 0.356 1 47.91 ? C1' SAM 2304 A 1 HETATM 18 N N9 SAM . . . F 4 -47.186 2.184 1.29 1 44.3 ? N9 SAM 2304 A 1 HETATM 19 C C8 SAM . . . F 4 -45.819 2.074 1.252 1 43.14 ? C8 SAM 2304 A 1 HETATM 20 N N7 SAM . . . F 4 -45.424 1.296 2.285 1 42.97 ? N7 SAM 2304 A 1 HETATM 21 C C5 SAM . . . F 4 -46.517 0.921 2.986 1 43.15 ? C5 SAM 2304 A 1 HETATM 22 C C6 SAM . . . F 4 -46.679 0.138 4.122 1 42.72 ? C6 SAM 2304 A 1 HETATM 23 N N6 SAM . . . F 4 -45.626 -0.404 4.726 1 40.53 ? N6 SAM 2304 A 1 HETATM 24 N N1 SAM . . . F 4 -47.945 -0.076 4.621 1 44.4 ? N1 SAM 2304 A 1 HETATM 25 C C2 SAM . . . F 4 -49.043 0.485 4 1 43.17 ? C2 SAM 2304 A 1 HETATM 26 N N3 SAM . . . F 4 -48.876 1.261 2.872 1 41.81 ? N3 SAM 2304 A 1 HETATM 27 C C4 SAM . . . F 4 -47.634 1.473 2.372 1 42.87 ? C4 SAM 2304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #