data_6INE # _model_server_result.job_id wFbFZluZcDSX1x53Ol9nyQ _model_server_result.datetime_utc '2024-11-20 04:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ine # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 6INE # _exptl.entry_id 6INE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6INE _cell.length_a 73.12 _cell.length_b 73.12 _cell.length_c 202.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6INE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 70 A CYS 2091 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A SG CYS 72 A CYS 2093 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A SG CYS 83 A CYS 2104 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 A SG CYS 83 A CYS 2104 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc5 A SG CYS 87 A CYS 2108 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc6 A SG CYS 96 A CYS 2117 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc7 A SG CYS 101 A CYS 2122 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 A SG CYS 107 A CYS 2128 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc9 A SG CYS 199 A CYS 2220 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc10 A SG CYS 247 A CYS 2268 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 A SG CYS 249 A CYS 2270 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A SG CYS 254 A CYS 2275 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6INE _atom_sites.fract_transf_matrix[1][1] 0.013676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 2301 1 ZN ZN . D 3 ZN A 1 2302 2 ZN ZN . E 3 ZN A 1 2303 3 ZN ZN . F 4 SAM A 1 2304 1 SAM SAM . G 5 GOL B 1 401 401 GOL GOL . H 6 HOH A 1 2401 80 HOH HOH . H 6 HOH A 2 2402 41 HOH HOH . H 6 HOH A 3 2403 54 HOH HOH . H 6 HOH A 4 2404 74 HOH HOH . H 6 HOH A 5 2405 81 HOH HOH . H 6 HOH A 6 2406 10 HOH HOH . H 6 HOH A 7 2407 45 HOH HOH . H 6 HOH A 8 2408 63 HOH HOH . H 6 HOH A 9 2409 6 HOH HOH . H 6 HOH A 10 2410 23 HOH HOH . H 6 HOH A 11 2411 31 HOH HOH . H 6 HOH A 12 2412 3 HOH HOH . H 6 HOH A 13 2413 47 HOH HOH . H 6 HOH A 14 2414 88 HOH HOH . H 6 HOH A 15 2415 24 HOH HOH . H 6 HOH A 16 2416 26 HOH HOH . H 6 HOH A 17 2417 20 HOH HOH . H 6 HOH A 18 2418 75 HOH HOH . H 6 HOH A 19 2419 12 HOH HOH . H 6 HOH A 20 2420 71 HOH HOH . H 6 HOH A 21 2421 29 HOH HOH . H 6 HOH A 22 2422 28 HOH HOH . H 6 HOH A 23 2423 59 HOH HOH . H 6 HOH A 24 2424 8 HOH HOH . H 6 HOH A 25 2425 64 HOH HOH . H 6 HOH A 26 2426 52 HOH HOH . H 6 HOH A 27 2427 16 HOH HOH . H 6 HOH A 28 2428 27 HOH HOH . H 6 HOH A 29 2429 42 HOH HOH . H 6 HOH A 30 2430 35 HOH HOH . H 6 HOH A 31 2431 37 HOH HOH . H 6 HOH A 32 2432 55 HOH HOH . H 6 HOH A 33 2433 76 HOH HOH . H 6 HOH A 34 2434 58 HOH HOH . H 6 HOH A 35 2435 50 HOH HOH . H 6 HOH A 36 2436 57 HOH HOH . H 6 HOH A 37 2437 69 HOH HOH . H 6 HOH A 38 2438 19 HOH HOH . I 6 HOH B 1 501 87 HOH HOH . I 6 HOH B 2 502 46 HOH HOH . I 6 HOH B 3 503 67 HOH HOH . I 6 HOH B 4 504 14 HOH HOH . I 6 HOH B 5 505 36 HOH HOH . I 6 HOH B 6 506 48 HOH HOH . I 6 HOH B 7 507 39 HOH HOH . I 6 HOH B 8 508 17 HOH HOH . I 6 HOH B 9 509 5 HOH HOH . I 6 HOH B 10 510 9 HOH HOH . I 6 HOH B 11 511 11 HOH HOH . I 6 HOH B 12 512 1 HOH HOH . I 6 HOH B 13 513 22 HOH HOH . I 6 HOH B 14 514 7 HOH HOH . I 6 HOH B 15 515 2 HOH HOH . I 6 HOH B 16 516 21 HOH HOH . I 6 HOH B 17 517 18 HOH HOH . I 6 HOH B 18 518 13 HOH HOH . I 6 HOH B 19 519 4 HOH HOH . I 6 HOH B 20 520 79 HOH HOH . I 6 HOH B 21 521 38 HOH HOH . I 6 HOH B 22 522 61 HOH HOH . I 6 HOH B 23 523 43 HOH HOH . I 6 HOH B 24 524 32 HOH HOH . I 6 HOH B 25 525 34 HOH HOH . I 6 HOH B 26 526 65 HOH HOH . I 6 HOH B 27 527 25 HOH HOH . I 6 HOH B 28 528 78 HOH HOH . I 6 HOH B 29 529 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -68.507 -25.261 -26.852 1 47.56 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . G 5 -67.947 -23.984 -26.687 1 46.25 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . G 5 -69.502 -25.502 -25.677 1 48.64 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . G 5 -69.528 -26.832 -25.292 1 50.02 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . G 5 -70.89 -25.019 -26.193 1 48.48 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . G 5 -71.821 -25.308 -25.187 1 48.11 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #