data_6IOA # _model_server_result.job_id uNXFDlc0jdFoCsX6X9dPGw _model_server_result.datetime_utc '2025-02-16 12:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ioa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6IOA # _exptl.entry_id 6IOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.48 _cell.angle_gamma 90 _cell.entry_id 6IOA _cell.length_a 36.407 _cell.length_b 51.448 _cell.length_c 55.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 44 A CYS 24 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A SG CYS 47 A CYS 27 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A ND1 HIS 115 A HIS 95 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc4 A SG CYS 140 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C4 H4 N2 O2' _chem_comp.formula_weight 112.087 _chem_comp.id URA _chem_comp.mon_nstd_flag . _chem_comp.name URACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URA sing 374 n n N1 C6 URA sing 375 n n N1 HN1 URA sing 376 n n C2 O2 URA doub 377 n n C2 N3 URA sing 378 n n N3 C4 URA sing 379 n n N3 HN3 URA sing 380 n n C4 O4 URA doub 381 n n C4 C5 URA sing 382 n n C5 C6 URA doub 383 n n C5 H5 URA sing 384 n n C6 H6 URA sing 385 n n # _atom_sites.entry_id 6IOA _atom_sites.fract_transf_matrix[1][1] 0.027467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007606 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 1 SF4 SF4 . C 3 URA A 1 302 211 URA URA . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 HOH A 1 401 89 HOH HOH . E 5 HOH A 2 402 83 HOH HOH . E 5 HOH A 3 403 102 HOH HOH . E 5 HOH A 4 404 95 HOH HOH . E 5 HOH A 5 405 115 HOH HOH . E 5 HOH A 6 406 112 HOH HOH . E 5 HOH A 7 407 63 HOH HOH . E 5 HOH A 8 408 105 HOH HOH . E 5 HOH A 9 409 118 HOH HOH . E 5 HOH A 10 410 93 HOH HOH . E 5 HOH A 11 411 132 HOH HOH . E 5 HOH A 12 412 122 HOH HOH . E 5 HOH A 13 413 106 HOH HOH . E 5 HOH A 14 414 134 HOH HOH . E 5 HOH A 15 415 55 HOH HOH . E 5 HOH A 16 416 44 HOH HOH . E 5 HOH A 17 417 46 HOH HOH . E 5 HOH A 18 418 113 HOH HOH . E 5 HOH A 19 419 84 HOH HOH . E 5 HOH A 20 420 25 HOH HOH . E 5 HOH A 21 421 71 HOH HOH . E 5 HOH A 22 422 40 HOH HOH . E 5 HOH A 23 423 10 HOH HOH . E 5 HOH A 24 424 1 HOH HOH . E 5 HOH A 25 425 14 HOH HOH . E 5 HOH A 26 426 6 HOH HOH . E 5 HOH A 27 427 92 HOH HOH . E 5 HOH A 28 428 119 HOH HOH . E 5 HOH A 29 429 85 HOH HOH . E 5 HOH A 30 430 51 HOH HOH . E 5 HOH A 31 431 72 HOH HOH . E 5 HOH A 32 432 104 HOH HOH . E 5 HOH A 33 433 73 HOH HOH . E 5 HOH A 34 434 91 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 41 HOH HOH . E 5 HOH A 37 437 17 HOH HOH . E 5 HOH A 38 438 53 HOH HOH . E 5 HOH A 39 439 88 HOH HOH . E 5 HOH A 40 440 26 HOH HOH . E 5 HOH A 41 441 22 HOH HOH . E 5 HOH A 42 442 27 HOH HOH . E 5 HOH A 43 443 2 HOH HOH . E 5 HOH A 44 444 5 HOH HOH . E 5 HOH A 45 445 19 HOH HOH . E 5 HOH A 46 446 97 HOH HOH . E 5 HOH A 47 447 74 HOH HOH . E 5 HOH A 48 448 126 HOH HOH . E 5 HOH A 49 449 68 HOH HOH . E 5 HOH A 50 450 49 HOH HOH . E 5 HOH A 51 451 80 HOH HOH . E 5 HOH A 52 452 37 HOH HOH . E 5 HOH A 53 453 98 HOH HOH . E 5 HOH A 54 454 130 HOH HOH . E 5 HOH A 55 455 125 HOH HOH . E 5 HOH A 56 456 117 HOH HOH . E 5 HOH A 57 457 52 HOH HOH . E 5 HOH A 58 458 127 HOH HOH . E 5 HOH A 59 459 56 HOH HOH . E 5 HOH A 60 460 100 HOH HOH . E 5 HOH A 61 461 57 HOH HOH . E 5 HOH A 62 462 133 HOH HOH . E 5 HOH A 63 463 70 HOH HOH . E 5 HOH A 64 464 3 HOH HOH . E 5 HOH A 65 465 31 HOH HOH . E 5 HOH A 66 466 128 HOH HOH . E 5 HOH A 67 467 16 HOH HOH . E 5 HOH A 68 468 96 HOH HOH . E 5 HOH A 69 469 23 HOH HOH . E 5 HOH A 70 470 7 HOH HOH . E 5 HOH A 71 471 79 HOH HOH . E 5 HOH A 72 472 50 HOH HOH . E 5 HOH A 73 473 60 HOH HOH . E 5 HOH A 74 474 120 HOH HOH . E 5 HOH A 75 475 78 HOH HOH . E 5 HOH A 76 476 99 HOH HOH . E 5 HOH A 77 477 82 HOH HOH . E 5 HOH A 78 478 8 HOH HOH . E 5 HOH A 79 479 66 HOH HOH . E 5 HOH A 80 480 136 HOH HOH . E 5 HOH A 81 481 54 HOH HOH . E 5 HOH A 82 482 111 HOH HOH . E 5 HOH A 83 483 108 HOH HOH . E 5 HOH A 84 484 30 HOH HOH . E 5 HOH A 85 485 94 HOH HOH . E 5 HOH A 86 486 61 HOH HOH . E 5 HOH A 87 487 62 HOH HOH . E 5 HOH A 88 488 69 HOH HOH . E 5 HOH A 89 489 65 HOH HOH . E 5 HOH A 90 490 131 HOH HOH . E 5 HOH A 91 491 76 HOH HOH . E 5 HOH A 92 492 67 HOH HOH . E 5 HOH A 93 493 110 HOH HOH . E 5 HOH A 94 494 123 HOH HOH . E 5 HOH A 95 495 107 HOH HOH . E 5 HOH A 96 496 109 HOH HOH . E 5 HOH A 97 497 121 HOH HOH . E 5 HOH A 98 498 101 HOH HOH . E 5 HOH A 99 499 135 HOH HOH . E 5 HOH A 100 500 64 HOH HOH . E 5 HOH A 101 501 114 HOH HOH . E 5 HOH A 102 502 47 HOH HOH . E 5 HOH A 103 503 90 HOH HOH . E 5 HOH A 104 504 48 HOH HOH . E 5 HOH A 105 505 137 HOH HOH . E 5 HOH A 106 506 116 HOH HOH . E 5 HOH A 107 507 124 HOH HOH . E 5 HOH A 108 508 86 HOH HOH . E 5 HOH A 109 509 58 HOH HOH . E 5 HOH A 110 510 81 HOH HOH . E 5 HOH A 111 511 59 HOH HOH . E 5 HOH A 112 512 39 HOH HOH . E 5 HOH A 113 513 139 HOH HOH . E 5 HOH A 114 514 138 HOH HOH . E 5 HOH A 115 515 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URA . . . C 3 -63.308 -4.151 5.418 1 10.26 ? N1 URA 302 A 1 HETATM 2 C C2 URA . . . C 3 -62.535 -4.243 6.552 1 9.71 ? C2 URA 302 A 1 HETATM 3 O O2 URA . . . C 3 -61.465 -3.612 6.668 1 7.44 ? O2 URA 302 A 1 HETATM 4 N N3 URA . . . C 3 -62.91 -4.994 7.581 1 9.32 ? N3 URA 302 A 1 HETATM 5 C C4 URA . . . C 3 -64.059 -5.657 7.546 1 9.5 ? C4 URA 302 A 1 HETATM 6 O O4 URA . . . C 3 -64.438 -6.353 8.476 1 8.01 ? O4 URA 302 A 1 HETATM 7 C C5 URA . . . C 3 -64.842 -5.598 6.419 1 10.07 ? C5 URA 302 A 1 HETATM 8 C C6 URA . . . C 3 -64.451 -4.84 5.324 1 9.45 ? C6 URA 302 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #