data_6IOC
#
_model_server_result.job_id            opamp3RFN2Sal3Kd7WzF6Q 
_model_server_result.datetime_utc      '2024-12-01 03:42:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ioc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6IOC 
#
_exptl.entry_id    6IOC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URACIL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.62 
_cell.angle_gamma         90 
_cell.entry_id            6IOC 
_cell.length_a            38.683 
_cell.length_b            50.711 
_cell.length_c            38.826 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IOC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 27 A CYS 24 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc2 A SG CYS 30 A CYS 27 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 A ND1 HIS 98 A HIS 95 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc4 A SG CYS 123 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
#
_chem_comp.formula           'C4 H4 N2 O2' 
_chem_comp.formula_weight    112.087 
_chem_comp.id                URA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URACIL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 URA sing 370 n n 
N1 C6 URA sing 371 n n 
N1 HN1 URA sing 372 n n 
C2 O2 URA doub 373 n n 
C2 N3 URA sing 374 n n 
N3 C4 URA sing 375 n n 
N3 HN3 URA sing 376 n n 
C4 O4 URA doub 377 n n 
C4 C5 URA sing 378 n n 
C5 C6 URA doub 379 n n 
C5 H5 URA sing 380 n n 
C6 H6 URA sing 381 n n 
#
_atom_sites.entry_id                     6IOC 
_atom_sites.fract_transf_matrix[1][1]    0.025851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000281 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 301 1 SF4 SF4 . 
C 3 URA A 1 302 211 URA URA . 
D 4 HOH A 1 401 186 HOH HOH . 
D 4 HOH A 2 402 175 HOH HOH . 
D 4 HOH A 3 403 153 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 3 HOH HOH . 
D 4 HOH A 6 406 184 HOH HOH . 
D 4 HOH A 7 407 65 HOH HOH . 
D 4 HOH A 8 408 173 HOH HOH . 
D 4 HOH A 9 409 2 HOH HOH . 
D 4 HOH A 10 410 135 HOH HOH . 
D 4 HOH A 11 411 129 HOH HOH . 
D 4 HOH A 12 412 187 HOH HOH . 
D 4 HOH A 13 413 160 HOH HOH . 
D 4 HOH A 14 414 83 HOH HOH . 
D 4 HOH A 15 415 56 HOH HOH . 
D 4 HOH A 16 416 90 HOH HOH . 
D 4 HOH A 17 417 118 HOH HOH . 
D 4 HOH A 18 418 185 HOH HOH . 
D 4 HOH A 19 419 53 HOH HOH . 
D 4 HOH A 20 420 178 HOH HOH . 
D 4 HOH A 21 421 82 HOH HOH . 
D 4 HOH A 22 422 6 HOH HOH . 
D 4 HOH A 23 423 121 HOH HOH . 
D 4 HOH A 24 424 104 HOH HOH . 
D 4 HOH A 25 425 14 HOH HOH . 
D 4 HOH A 26 426 40 HOH HOH . 
D 4 HOH A 27 427 107 HOH HOH . 
D 4 HOH A 28 428 102 HOH HOH . 
D 4 HOH A 29 429 16 HOH HOH . 
D 4 HOH A 30 430 172 HOH HOH . 
D 4 HOH A 31 431 8 HOH HOH . 
D 4 HOH A 32 432 157 HOH HOH . 
D 4 HOH A 33 433 17 HOH HOH . 
D 4 HOH A 34 434 147 HOH HOH . 
D 4 HOH A 35 435 21 HOH HOH . 
D 4 HOH A 36 436 103 HOH HOH . 
D 4 HOH A 37 437 64 HOH HOH . 
D 4 HOH A 38 438 174 HOH HOH . 
D 4 HOH A 39 439 37 HOH HOH . 
D 4 HOH A 40 440 23 HOH HOH . 
D 4 HOH A 41 441 188 HOH HOH . 
D 4 HOH A 42 442 141 HOH HOH . 
D 4 HOH A 43 443 182 HOH HOH . 
D 4 HOH A 44 444 7 HOH HOH . 
D 4 HOH A 45 445 95 HOH HOH . 
D 4 HOH A 46 446 154 HOH HOH . 
D 4 HOH A 47 447 13 HOH HOH . 
D 4 HOH A 48 448 47 HOH HOH . 
D 4 HOH A 49 449 122 HOH HOH . 
D 4 HOH A 50 450 5 HOH HOH . 
D 4 HOH A 51 451 67 HOH HOH . 
D 4 HOH A 52 452 9 HOH HOH . 
D 4 HOH A 53 453 28 HOH HOH . 
D 4 HOH A 54 454 139 HOH HOH . 
D 4 HOH A 55 455 124 HOH HOH . 
D 4 HOH A 56 456 183 HOH HOH . 
D 4 HOH A 57 457 105 HOH HOH . 
D 4 HOH A 58 458 48 HOH HOH . 
D 4 HOH A 59 459 126 HOH HOH . 
D 4 HOH A 60 460 20 HOH HOH . 
D 4 HOH A 61 461 34 HOH HOH . 
D 4 HOH A 62 462 146 HOH HOH . 
D 4 HOH A 63 463 19 HOH HOH . 
D 4 HOH A 64 464 58 HOH HOH . 
D 4 HOH A 65 465 100 HOH HOH . 
D 4 HOH A 66 466 93 HOH HOH . 
D 4 HOH A 67 467 167 HOH HOH . 
D 4 HOH A 68 468 59 HOH HOH . 
D 4 HOH A 69 469 136 HOH HOH . 
D 4 HOH A 70 470 98 HOH HOH . 
D 4 HOH A 71 471 127 HOH HOH . 
D 4 HOH A 72 472 71 HOH HOH . 
D 4 HOH A 73 473 125 HOH HOH . 
D 4 HOH A 74 474 39 HOH HOH . 
D 4 HOH A 75 475 27 HOH HOH . 
D 4 HOH A 76 476 85 HOH HOH . 
D 4 HOH A 77 477 91 HOH HOH . 
D 4 HOH A 78 478 86 HOH HOH . 
D 4 HOH A 79 479 15 HOH HOH . 
D 4 HOH A 80 480 1 HOH HOH . 
D 4 HOH A 81 481 18 HOH HOH . 
D 4 HOH A 82 482 89 HOH HOH . 
D 4 HOH A 83 483 66 HOH HOH . 
D 4 HOH A 84 484 24 HOH HOH . 
D 4 HOH A 85 485 30 HOH HOH . 
D 4 HOH A 86 486 29 HOH HOH . 
D 4 HOH A 87 487 176 HOH HOH . 
D 4 HOH A 88 488 10 HOH HOH . 
D 4 HOH A 89 489 133 HOH HOH . 
D 4 HOH A 90 490 22 HOH HOH . 
D 4 HOH A 91 491 49 HOH HOH . 
D 4 HOH A 92 492 42 HOH HOH . 
D 4 HOH A 93 493 165 HOH HOH . 
D 4 HOH A 94 494 117 HOH HOH . 
D 4 HOH A 95 495 33 HOH HOH . 
D 4 HOH A 96 496 166 HOH HOH . 
D 4 HOH A 97 497 80 HOH HOH . 
D 4 HOH A 98 498 12 HOH HOH . 
D 4 HOH A 99 499 75 HOH HOH . 
D 4 HOH A 100 500 92 HOH HOH . 
D 4 HOH A 101 501 69 HOH HOH . 
D 4 HOH A 102 502 170 HOH HOH . 
D 4 HOH A 103 503 60 HOH HOH . 
D 4 HOH A 104 504 181 HOH HOH . 
D 4 HOH A 105 505 180 HOH HOH . 
D 4 HOH A 106 506 32 HOH HOH . 
D 4 HOH A 107 507 11 HOH HOH . 
D 4 HOH A 108 508 150 HOH HOH . 
D 4 HOH A 109 509 128 HOH HOH . 
D 4 HOH A 110 510 36 HOH HOH . 
D 4 HOH A 111 511 120 HOH HOH . 
D 4 HOH A 112 512 62 HOH HOH . 
D 4 HOH A 113 513 41 HOH HOH . 
D 4 HOH A 114 514 38 HOH HOH . 
D 4 HOH A 115 515 31 HOH HOH . 
D 4 HOH A 116 516 138 HOH HOH . 
D 4 HOH A 117 517 137 HOH HOH . 
D 4 HOH A 118 518 52 HOH HOH . 
D 4 HOH A 119 519 142 HOH HOH . 
D 4 HOH A 120 520 161 HOH HOH . 
D 4 HOH A 121 521 74 HOH HOH . 
D 4 HOH A 122 522 72 HOH HOH . 
D 4 HOH A 123 523 79 HOH HOH . 
D 4 HOH A 124 524 177 HOH HOH . 
D 4 HOH A 125 525 115 HOH HOH . 
D 4 HOH A 126 526 143 HOH HOH . 
D 4 HOH A 127 527 158 HOH HOH . 
D 4 HOH A 128 528 179 HOH HOH . 
D 4 HOH A 129 529 94 HOH HOH . 
D 4 HOH A 130 530 168 HOH HOH . 
D 4 HOH A 131 531 76 HOH HOH . 
D 4 HOH A 132 532 57 HOH HOH . 
D 4 HOH A 133 533 134 HOH HOH . 
D 4 HOH A 134 534 171 HOH HOH . 
D 4 HOH A 135 535 148 HOH HOH . 
D 4 HOH A 136 536 111 HOH HOH . 
D 4 HOH A 137 537 70 HOH HOH . 
D 4 HOH A 138 538 99 HOH HOH . 
D 4 HOH A 139 539 123 HOH HOH . 
D 4 HOH A 140 540 145 HOH HOH . 
D 4 HOH A 141 541 130 HOH HOH . 
D 4 HOH A 142 542 162 HOH HOH . 
D 4 HOH A 143 543 119 HOH HOH . 
D 4 HOH A 144 544 144 HOH HOH . 
D 4 HOH A 145 545 132 HOH HOH . 
D 4 HOH A 146 546 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 URA . . . C 3 9.886 -8.442 19.122 1 16.36 ? N1 URA 302 A 1 
HETATM 2 C C2 URA . . . C 3 9.804 -8.503 17.638 1 14.04 ? C2 URA 302 A 1 
HETATM 3 O O2 URA . . . C 3 8.945 -7.944 17.057 1 15.64 ? O2 URA 302 A 1 
HETATM 4 N N3 URA . . . C 3 10.802 -9.265 16.845 1 16.09 ? N3 URA 302 A 1 
HETATM 5 C C4 URA . . . C 3 11.905 -9.946 17.477 1 14.05 ? C4 URA 302 A 1 
HETATM 6 O O4 URA . . . C 3 12.716 -10.553 16.818 1 13.48 ? O4 URA 302 A 1 
HETATM 7 C C5 URA . . . C 3 11.985 -9.87 18.971 1 13.93 ? C5 URA 302 A 1 
HETATM 8 C C6 URA . . . C 3 10.99 -9.15 19.741 1 23.83 ? C6 URA 302 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           988 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           8 
#