data_6IP4 # _model_server_result.job_id AVApar6sdsRKkOZQNbOjQA _model_server_result.datetime_utc '2025-07-04 08:47:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ip4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":609}' # _entry.id 6IP4 # _exptl.entry_id 6IP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IP4 _cell.length_a 128.794 _cell.length_b 128.794 _cell.length_c 230.642 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 3 B ARG 26 1_555 B N M3L 4 B M3L 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 B C M3L 4 B M3L 27 1_555 B N SER 5 B SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A NE2 HIS 205 A HIS 293 1_555 C NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A OE2 GLU 207 A GLU 295 1_555 C NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 A NE2 HIS 300 A HIS 388 1_555 C NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A SG CYS 412 A CYS 500 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 A SG CYS 415 A CYS 503 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 A SG CYS 426 A CYS 514 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 A SG CYS 428 A CYS 516 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 A ND1 HIS 431 A HIS 519 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 A SG CYS 434 A CYS 522 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc10 A NE2 HIS 437 A HIS 525 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc11 A SG CYS 446 A CYS 534 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc12 C NI NI . A NI 601 1_555 F O1 OGA . A OGA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc13 C NI NI . A NI 601 1_555 F O2' OGA . A OGA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc14 C NI NI . A NI 601 1_555 N O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 337 n n S O2 SO4 doub 338 n n S O3 SO4 sing 339 n n S O4 SO4 sing 340 n n # _atom_sites.entry_id 6IP4 _atom_sites.fract_transf_matrix[1][1] 0.007764 _atom_sites.fract_transf_matrix[1][2] 0.004483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 601 800 NI NI . D 4 ZN A 1 602 801 ZN ZN . E 4 ZN A 1 603 802 ZN ZN . F 5 OGA A 1 604 901 OGA OGA . G 6 SO4 A 1 605 812 SO4 SO4 . H 6 SO4 A 1 606 813 SO4 SO4 . I 6 SO4 A 1 607 817 SO4 SO4 . J 6 SO4 A 1 608 818 SO4 SO4 . K 6 SO4 A 1 609 820 SO4 SO4 . L 6 SO4 A 1 610 828 SO4 SO4 . M 6 SO4 A 1 611 829 SO4 SO4 . N 7 HOH A 1 701 7 HOH HOH . N 7 HOH A 2 702 46 HOH HOH . N 7 HOH A 3 703 34 HOH HOH . N 7 HOH A 4 704 18 HOH HOH . N 7 HOH A 5 705 8 HOH HOH . N 7 HOH A 6 706 52 HOH HOH . N 7 HOH A 7 707 2 HOH HOH . N 7 HOH A 8 708 1 HOH HOH . N 7 HOH A 9 709 38 HOH HOH . N 7 HOH A 10 710 4 HOH HOH . N 7 HOH A 11 711 47 HOH HOH . N 7 HOH A 12 712 27 HOH HOH . N 7 HOH A 13 713 43 HOH HOH . N 7 HOH A 14 714 22 HOH HOH . N 7 HOH A 15 715 10 HOH HOH . N 7 HOH A 16 716 32 HOH HOH . N 7 HOH A 17 717 16 HOH HOH . N 7 HOH A 18 718 45 HOH HOH . N 7 HOH A 19 719 26 HOH HOH . N 7 HOH A 20 720 44 HOH HOH . N 7 HOH A 21 721 6 HOH HOH . N 7 HOH A 22 722 11 HOH HOH . N 7 HOH A 23 723 33 HOH HOH . N 7 HOH A 24 724 31 HOH HOH . N 7 HOH A 25 725 29 HOH HOH . N 7 HOH A 26 726 17 HOH HOH . N 7 HOH A 27 727 41 HOH HOH . N 7 HOH A 28 728 15 HOH HOH . N 7 HOH A 29 729 30 HOH HOH . N 7 HOH A 30 730 36 HOH HOH . N 7 HOH A 31 731 55 HOH HOH . N 7 HOH A 32 732 28 HOH HOH . N 7 HOH A 33 733 5 HOH HOH . N 7 HOH A 34 734 3 HOH HOH . N 7 HOH A 35 735 40 HOH HOH . N 7 HOH A 36 736 53 HOH HOH . N 7 HOH A 37 737 19 HOH HOH . N 7 HOH A 38 738 37 HOH HOH . N 7 HOH A 39 739 25 HOH HOH . N 7 HOH A 40 740 13 HOH HOH . N 7 HOH A 41 741 23 HOH HOH . N 7 HOH A 42 742 50 HOH HOH . N 7 HOH A 43 743 42 HOH HOH . N 7 HOH A 44 744 14 HOH HOH . N 7 HOH A 45 745 21 HOH HOH . N 7 HOH A 46 746 56 HOH HOH . N 7 HOH A 47 747 51 HOH HOH . N 7 HOH A 48 748 35 HOH HOH . N 7 HOH A 49 749 9 HOH HOH . N 7 HOH A 50 750 20 HOH HOH . N 7 HOH A 51 751 12 HOH HOH . N 7 HOH A 52 752 49 HOH HOH . N 7 HOH A 53 753 39 HOH HOH . N 7 HOH A 54 754 57 HOH HOH . N 7 HOH A 55 755 24 HOH HOH . N 7 HOH A 56 756 48 HOH HOH . N 7 HOH A 57 757 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 6 55.192 35.897 120.775 1 127.04 ? S SO4 609 A 1 HETATM 2 O O1 SO4 . . . K 6 54.281 36.959 120.352 1 126.28 ? O1 SO4 609 A 1 HETATM 3 O O2 SO4 . . . K 6 55.451 34.994 119.648 1 128.86 ? O2 SO4 609 A 1 HETATM 4 O O3 SO4 . . . K 6 54.558 35.14 121.856 1 108.62 ? O3 SO4 609 A 1 HETATM 5 O O4 SO4 . . . K 6 56.465 36.489 121.223 1 119.86 ? O4 SO4 609 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 981 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #