data_6IPC # _model_server_result.job_id zmniil51GhiJ9esuT0PbpA _model_server_result.datetime_utc '2024-10-18 15:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ipc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":201}' # _entry.id 6IPC # _exptl.entry_id 6IPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.1 _cell.angle_beta 90.28 _cell.angle_gamma 90.18 _cell.entry_id 6IPC _cell.length_a 52.304 _cell.length_b 139.223 _cell.length_c 139.114 _cell.Z_PDB 14 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,Q,S,T,U,V,W 1 1 I,J,K,L,M,N,O,P,R,X,Y,Z,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O LEU 149 E LEU 149 1_555 E CB ALA 154 E ALA 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 E O LYS 151 E LYS 151 1_555 E N GLY 153 E GLY 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale3 E SD MET 152 E MET 152 1_555 G CG TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? covale ? covale4 E SD MET 152 E MET 152 1_555 G CD2 TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale5 E CE MET 152 E MET 152 1_555 G CE2 TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.17 ? covale ? covale6 E CE MET 152 E MET 152 1_555 G CZ TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale7 H O GLU 141 H GLU 141 1_555 H CD2 LEU 142 H LEU 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale8 I C ASN 148 I ASN 148 1_555 I CE MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale9 I N LEU 149 I LEU 149 1_555 I CE MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 I C LEU 149 I LEU 149 1_555 I SD MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? covale ? covale11 I O LEU 149 I LEU 149 1_555 I SD MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? covale ? covale12 K C ASN 148 K ASN 148 1_555 K CE MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale13 K O ASN 148 K ASN 148 1_555 K CE MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale14 K C LEU 149 K LEU 149 1_555 K SD MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? covale ? covale15 K O LEU 149 K LEU 149 1_555 K CG MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale16 K O LEU 149 K LEU 149 1_555 K SD MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? covale ? covale17 K C ARG 150 K ARG 150 1_555 K SD MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? covale ? covale18 K CG TYR 162 K TYR 162 1_555 O CE MET 152 O MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? covale ? covale19 M O LEU 149 M LEU 149 1_555 M CB ALA 154 M ALA 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6IPC _atom_sites.fract_transf_matrix[1][1] 0.019119 _atom_sites.fract_transf_matrix[1][2] 0.00006 _atom_sites.fract_transf_matrix[1][3] 0.000093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007183 _atom_sites.fract_transf_matrix[2][3] 0.000013 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 MPD A 1 201 1 MPD MPD . R 3 MPD K 1 201 2 MPD MPD . S 4 HOH C 1 201 13 HOH HOH . S 4 HOH C 2 202 14 HOH HOH . S 4 HOH C 3 203 15 HOH HOH . T 4 HOH D 1 201 1 HOH HOH . T 4 HOH D 2 202 16 HOH HOH . U 4 HOH E 1 201 8 HOH HOH . U 4 HOH E 2 202 11 HOH HOH . V 4 HOH G 1 201 6 HOH HOH . W 4 HOH H 1 201 3 HOH HOH . X 4 HOH I 1 201 4 HOH HOH . Y 4 HOH J 1 201 2 HOH HOH . Z 4 HOH K 1 301 5 HOH HOH . Z 4 HOH K 2 302 10 HOH HOH . AA 4 HOH L 1 201 12 HOH HOH . BA 4 HOH M 1 201 9 HOH HOH . BA 4 HOH M 2 202 7 HOH HOH . CA 4 HOH O 1 201 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . Q 3 5.728 -0.412 -0.332 1 165.74 ? C1 MPD 201 A 1 HETATM 2 C C2 MPD . . . Q 3 6.337 0.703 -1.199 1 165.97 ? C2 MPD 201 A 1 HETATM 3 O O2 MPD . . . Q 3 5.254 1.535 -1.701 1 155.38 ? O2 MPD 201 A 1 HETATM 4 C CM MPD . . . Q 3 7.22 1.629 -0.343 1 151.34 ? CM MPD 201 A 1 HETATM 5 C C3 MPD . . . Q 3 7.159 0.177 -2.388 1 160.68 ? C3 MPD 201 A 1 HETATM 6 C C4 MPD . . . Q 3 6.511 -0.893 -3.279 1 141.76 ? C4 MPD 201 A 1 HETATM 7 O O4 MPD . . . Q 3 6.915 -0.684 -4.618 1 132.09 ? O4 MPD 201 A 1 HETATM 8 C C5 MPD . . . Q 3 6.876 -2.334 -2.892 1 116.43 ? C5 MPD 201 A 1 HETATM 9 H H11 MPD . . . Q 3 6.006 -1.383 -0.741 1 198.89 ? H11 MPD 201 A 1 HETATM 10 H H12 MPD . . . Q 3 4.643 -0.316 -0.328 1 198.89 ? H12 MPD 201 A 1 HETATM 11 H H13 MPD . . . Q 3 6.105 -0.325 0.687 1 198.89 ? H13 MPD 201 A 1 HETATM 12 H HO2 MPD . . . Q 3 5.296 1.57 -2.68 1 186.45 ? HO2 MPD 201 A 1 HETATM 13 H HM1 MPD . . . Q 3 8.216 1.692 -0.783 1 181.6 ? HM1 MPD 201 A 1 HETATM 14 H HM2 MPD . . . Q 3 6.776 2.624 -0.308 1 181.6 ? HM2 MPD 201 A 1 HETATM 15 H HM3 MPD . . . Q 3 7.295 1.229 0.668 1 181.6 ? HM3 MPD 201 A 1 HETATM 16 H H31 MPD . . . Q 3 7.423 1.027 -3.018 1 192.82 ? H31 MPD 201 A 1 HETATM 17 H H32 MPD . . . Q 3 8.094 -0.227 -2 1 192.82 ? H32 MPD 201 A 1 HETATM 18 H H4 MPD . . . Q 3 5.428 -0.785 -3.207 1 170.11 ? H4 MPD 201 A 1 HETATM 19 H HO4 MPD . . . Q 3 7.73 -1.197 -4.797 1 158.51 ? HO4 MPD 201 A 1 HETATM 20 H H51 MPD . . . Q 3 7.35 -2.828 -3.74 1 139.71 ? H51 MPD 201 A 1 HETATM 21 H H52 MPD . . . Q 3 5.972 -2.876 -2.615 1 139.71 ? H52 MPD 201 A 1 HETATM 22 H H53 MPD . . . Q 3 7.565 -2.32 -2.048 1 139.71 ? H53 MPD 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #