data_6IPC
#
_model_server_result.job_id            ywPhU_knn9g0RnhhrvD9fA 
_model_server_result.datetime_utc      '2024-10-18 15:26:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ipc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":201}' 
#
_entry.id    6IPC 
#
_exptl.entry_id    6IPC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.1 
_cell.angle_beta          90.28 
_cell.angle_gamma         90.18 
_cell.entry_id            6IPC 
_cell.length_a            52.304 
_cell.length_b            139.223 
_cell.length_c            139.114 
_cell.Z_PDB               14 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IPC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA octameric 8 author_and_software_defined_assembly 1 
PISA octameric 8 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,Q,S,T,U,V,W 1 1 
I,J,K,L,M,N,O,P,R,X,Y,Z,AA,BA,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E O LEU 149 E LEU 149 1_555 E CB ALA 154 E ALA 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 E O LYS 151 E LYS 151 1_555 E N GLY 153 E GLY 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale3 E SD MET 152 E MET 152 1_555 G CG TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? 
covale ? covale4 E SD MET 152 E MET 152 1_555 G CD2 TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale5 E CE MET 152 E MET 152 1_555 G CE2 TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.17 ? 
covale ? covale6 E CE MET 152 E MET 152 1_555 G CZ TYR 162 G TYR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? 
covale ? covale7 H O GLU 141 H GLU 141 1_555 H CD2 LEU 142 H LEU 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale8 I C ASN 148 I ASN 148 1_555 I CE MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
covale ? covale9 I N LEU 149 I LEU 149 1_555 I CE MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale10 I C LEU 149 I LEU 149 1_555 I SD MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? 
covale ? covale11 I O LEU 149 I LEU 149 1_555 I SD MET 152 I MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? 
covale ? covale12 K C ASN 148 K ASN 148 1_555 K CE MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
covale ? covale13 K O ASN 148 K ASN 148 1_555 K CE MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? 
covale ? covale14 K C LEU 149 K LEU 149 1_555 K SD MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? 
covale ? covale15 K O LEU 149 K LEU 149 1_555 K CG MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale16 K O LEU 149 K LEU 149 1_555 K SD MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? 
covale ? covale17 K C ARG 150 K ARG 150 1_555 K SD MET 152 K MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
covale ? covale18 K CG TYR 162 K TYR 162 1_555 O CE MET 152 O MET 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? 
covale ? covale19 M O LEU 149 M LEU 149 1_555 M CB ALA 154 M ALA 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     6IPC 
_atom_sites.fract_transf_matrix[1][1]    0.019119 
_atom_sites.fract_transf_matrix[1][2]    0.00006 
_atom_sites.fract_transf_matrix[1][3]    0.000093 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007183 
_atom_sites.fract_transf_matrix[2][3]    0.000013 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 MPD A 1 201 1 MPD MPD . 
R 3 MPD K 1 201 2 MPD MPD . 
S 4 HOH C 1 201 13 HOH HOH . 
S 4 HOH C 2 202 14 HOH HOH . 
S 4 HOH C 3 203 15 HOH HOH . 
T 4 HOH D 1 201 1 HOH HOH . 
T 4 HOH D 2 202 16 HOH HOH . 
U 4 HOH E 1 201 8 HOH HOH . 
U 4 HOH E 2 202 11 HOH HOH . 
V 4 HOH G 1 201 6 HOH HOH . 
W 4 HOH H 1 201 3 HOH HOH . 
X 4 HOH I 1 201 4 HOH HOH . 
Y 4 HOH J 1 201 2 HOH HOH . 
Z 4 HOH K 1 301 5 HOH HOH . 
Z 4 HOH K 2 302 10 HOH HOH . 
AA 4 HOH L 1 201 12 HOH HOH . 
BA 4 HOH M 1 201 9 HOH HOH . 
BA 4 HOH M 2 202 7 HOH HOH . 
CA 4 HOH O 1 201 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . R 3 -18.665 -67.675 -67.657 1 149.44 ? C1 MPD 201 K 1 
HETATM 2 C C2 MPD . . . R 3 -18.065 -69.059 -67.958 1 165.71 ? C2 MPD 201 K 1 
HETATM 3 O O2 MPD . . . R 3 -16.621 -68.898 -67.92 1 167.38 ? O2 MPD 201 K 1 
HETATM 4 C CM MPD . . . R 3 -18.419 -70.049 -66.828 1 148.17 ? CM MPD 201 K 1 
HETATM 5 C C3 MPD . . . R 3 -18.464 -69.699 -69.298 1 172.98 ? C3 MPD 201 K 1 
HETATM 6 C C4 MPD . . . R 3 -18.674 -68.814 -70.535 1 163.82 ? C4 MPD 201 K 1 
HETATM 7 O O4 MPD . . . R 3 -17.836 -67.682 -70.534 1 152.89 ? O4 MPD 201 K 1 
HETATM 8 C C5 MPD . . . R 3 -18.471 -69.612 -71.839 1 147.06 ? C5 MPD 201 K 1 
HETATM 9 H H11 MPD . . . R 3 -19.302 -67.367 -68.485 1 179.33 ? H11 MPD 201 K 1 
HETATM 10 H H12 MPD . . . R 3 -17.86 -66.95 -67.529 1 179.33 ? H12 MPD 201 K 1 
HETATM 11 H H13 MPD . . . R 3 -19.256 -67.726 -66.742 1 179.33 ? H13 MPD 201 K 1 
HETATM 12 H HO2 MPD . . . R 3 -16.234 -69.234 -68.756 1 200.86 ? HO2 MPD 201 K 1 
HETATM 13 H HM1 MPD . . . R 3 -18.861 -70.948 -67.257 1 177.81 ? HM1 MPD 201 K 1 
HETATM 14 H HM2 MPD . . . R 3 -19.132 -69.583 -66.147 1 177.81 ? HM2 MPD 201 K 1 
HETATM 15 H HM3 MPD . . . R 3 -17.515 -70.314 -66.28 1 177.81 ? HM3 MPD 201 K 1 
HETATM 16 H H31 MPD . . . R 3 -17.703 -70.437 -69.549 1 207.58 ? H31 MPD 201 K 1 
HETATM 17 H H32 MPD . . . R 3 -19.387 -70.256 -69.134 1 207.58 ? H32 MPD 201 K 1 
HETATM 18 H H4 MPD . . . R 3 -19.71 -68.476 -70.52 1 196.59 ? H4 MPD 201 K 1 
HETATM 19 H HO4 MPD . . . R 3 -16.941 -67.938 -70.841 1 183.47 ? HO4 MPD 201 K 1 
HETATM 20 H H51 MPD . . . R 3 -17.725 -69.113 -72.458 1 176.47 ? H51 MPD 201 K 1 
HETATM 21 H H52 MPD . . . R 3 -19.415 -69.667 -72.382 1 176.47 ? H52 MPD 201 K 1 
HETATM 22 H H53 MPD . . . R 3 -18.13 -70.619 -71.6 1 176.47 ? H53 MPD 201 K 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#