data_6IPJ # _model_server_result.job_id EfKTa1EzXiDezQhtz7yI-Q _model_server_result.datetime_utc '2024-11-22 22:36:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ipj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6IPJ # _exptl.entry_id 6IPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IPJ _cell.length_a 124.544 _cell.length_b 124.544 _cell.length_c 50.566 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 204 A ASP 330 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A OD2 ASP 204 A ASP 330 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 A OD2 ASP 206 A ASP 332 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 A OD1 ASP 206 A ASP 332 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 A OD2 ASP 280 A ASP 418 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 B MN MN . A MN 501 1_555 D O1A TTP . A TTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc7 B MN MN . A MN 501 1_555 D O1B TTP . A TTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 B MN MN . A MN 501 1_555 D O3G TTP . A TTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc9 B MN MN . A MN 501 1_555 I O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 C MN MN . A MN 502 1_555 D O1A TTP . A TTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc11 C MN MN . A MN 502 1_555 I O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6IPJ _atom_sites.fract_transf_matrix[1][1] 0.008029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 2 MN A 1 502 502 MN MN . D 3 TTP A 1 503 503 TTP TTP . E 4 SO4 A 1 504 504 SO4 SO4 . F 4 SO4 A 1 505 505 SO4 SO4 . G 4 SO4 A 1 506 506 SO4 SO4 . H 4 SO4 A 1 507 507 SO4 SO4 . I 5 HOH A 1 601 601 HOH HOH . I 5 HOH A 2 602 602 HOH HOH . I 5 HOH A 3 603 603 HOH HOH . I 5 HOH A 4 604 604 HOH HOH . I 5 HOH A 5 605 605 HOH HOH . I 5 HOH A 6 606 606 HOH HOH . I 5 HOH A 7 607 607 HOH HOH . I 5 HOH A 8 608 608 HOH HOH . I 5 HOH A 9 609 609 HOH HOH . I 5 HOH A 10 610 610 HOH HOH . I 5 HOH A 11 611 611 HOH HOH . I 5 HOH A 12 612 612 HOH HOH . I 5 HOH A 13 613 613 HOH HOH . I 5 HOH A 14 614 614 HOH HOH . I 5 HOH A 15 615 615 HOH HOH . I 5 HOH A 16 616 616 HOH HOH . I 5 HOH A 17 617 617 HOH HOH . I 5 HOH A 18 618 618 HOH HOH . I 5 HOH A 19 619 619 HOH HOH . I 5 HOH A 20 620 620 HOH HOH . I 5 HOH A 21 621 621 HOH HOH . I 5 HOH A 22 622 622 HOH HOH . I 5 HOH A 23 623 623 HOH HOH . I 5 HOH A 24 624 624 HOH HOH . I 5 HOH A 25 625 625 HOH HOH . I 5 HOH A 26 626 626 HOH HOH . I 5 HOH A 27 627 627 HOH HOH . I 5 HOH A 28 628 628 HOH HOH . I 5 HOH A 29 629 629 HOH HOH . I 5 HOH A 30 630 630 HOH HOH . I 5 HOH A 31 631 631 HOH HOH . I 5 HOH A 32 632 632 HOH HOH . I 5 HOH A 33 633 633 HOH HOH . I 5 HOH A 34 634 634 HOH HOH . I 5 HOH A 35 635 635 HOH HOH . I 5 HOH A 36 636 636 HOH HOH . I 5 HOH A 37 637 637 HOH HOH . I 5 HOH A 38 638 638 HOH HOH . I 5 HOH A 39 639 639 HOH HOH . I 5 HOH A 40 640 640 HOH HOH . I 5 HOH A 41 641 641 HOH HOH . I 5 HOH A 42 642 642 HOH HOH . I 5 HOH A 43 643 643 HOH HOH . I 5 HOH A 44 644 644 HOH HOH . I 5 HOH A 45 645 645 HOH HOH . I 5 HOH A 46 646 646 HOH HOH . I 5 HOH A 47 647 647 HOH HOH . I 5 HOH A 48 648 648 HOH HOH . I 5 HOH A 49 649 649 HOH HOH . I 5 HOH A 50 650 650 HOH HOH . I 5 HOH A 51 651 651 HOH HOH . I 5 HOH A 52 652 652 HOH HOH . I 5 HOH A 53 653 653 HOH HOH . I 5 HOH A 54 654 654 HOH HOH . I 5 HOH A 55 655 655 HOH HOH . I 5 HOH A 56 656 656 HOH HOH . I 5 HOH A 57 657 657 HOH HOH . I 5 HOH A 58 658 658 HOH HOH . I 5 HOH A 59 659 659 HOH HOH . I 5 HOH A 60 660 660 HOH HOH . I 5 HOH A 61 661 661 HOH HOH . I 5 HOH A 62 662 662 HOH HOH . I 5 HOH A 63 663 663 HOH HOH . I 5 HOH A 64 664 664 HOH HOH . I 5 HOH A 65 665 665 HOH HOH . I 5 HOH A 66 666 666 HOH HOH . I 5 HOH A 67 667 667 HOH HOH . I 5 HOH A 68 668 668 HOH HOH . I 5 HOH A 69 669 669 HOH HOH . I 5 HOH A 70 670 670 HOH HOH . I 5 HOH A 71 671 671 HOH HOH . I 5 HOH A 72 672 672 HOH HOH . I 5 HOH A 73 673 673 HOH HOH . I 5 HOH A 74 674 674 HOH HOH . I 5 HOH A 75 675 675 HOH HOH . I 5 HOH A 76 676 676 HOH HOH . I 5 HOH A 77 677 677 HOH HOH . I 5 HOH A 78 678 678 HOH HOH . I 5 HOH A 79 679 679 HOH HOH . I 5 HOH A 80 680 680 HOH HOH . I 5 HOH A 81 681 681 HOH HOH . I 5 HOH A 82 682 682 HOH HOH . I 5 HOH A 83 683 683 HOH HOH . I 5 HOH A 84 684 684 HOH HOH . I 5 HOH A 85 685 685 HOH HOH . I 5 HOH A 86 686 686 HOH HOH . I 5 HOH A 87 687 687 HOH HOH . I 5 HOH A 88 688 688 HOH HOH . I 5 HOH A 89 689 689 HOH HOH . I 5 HOH A 90 690 690 HOH HOH . I 5 HOH A 91 691 691 HOH HOH . I 5 HOH A 92 692 692 HOH HOH . I 5 HOH A 93 693 693 HOH HOH . I 5 HOH A 94 694 694 HOH HOH . I 5 HOH A 95 695 695 HOH HOH . I 5 HOH A 96 696 696 HOH HOH . I 5 HOH A 97 697 697 HOH HOH . I 5 HOH A 98 698 698 HOH HOH . I 5 HOH A 99 699 699 HOH HOH . I 5 HOH A 100 700 700 HOH HOH . I 5 HOH A 101 701 701 HOH HOH . I 5 HOH A 102 702 702 HOH HOH . I 5 HOH A 103 703 703 HOH HOH . I 5 HOH A 104 704 704 HOH HOH . I 5 HOH A 105 705 705 HOH HOH . I 5 HOH A 106 706 706 HOH HOH . I 5 HOH A 107 707 707 HOH HOH . I 5 HOH A 108 708 708 HOH HOH . I 5 HOH A 109 709 709 HOH HOH . I 5 HOH A 110 710 710 HOH HOH . I 5 HOH A 111 711 711 HOH HOH . I 5 HOH A 112 712 712 HOH HOH . I 5 HOH A 113 713 713 HOH HOH . I 5 HOH A 114 714 714 HOH HOH . I 5 HOH A 115 715 715 HOH HOH . I 5 HOH A 116 716 716 HOH HOH . I 5 HOH A 117 717 717 HOH HOH . I 5 HOH A 118 718 718 HOH HOH . I 5 HOH A 119 719 719 HOH HOH . I 5 HOH A 120 720 720 HOH HOH . I 5 HOH A 121 721 721 HOH HOH . I 5 HOH A 122 722 722 HOH HOH . I 5 HOH A 123 723 723 HOH HOH . I 5 HOH A 124 724 724 HOH HOH . I 5 HOH A 125 725 725 HOH HOH . I 5 HOH A 126 726 726 HOH HOH . I 5 HOH A 127 727 727 HOH HOH . I 5 HOH A 128 728 728 HOH HOH . I 5 HOH A 129 729 729 HOH HOH . I 5 HOH A 130 730 730 HOH HOH . I 5 HOH A 131 731 731 HOH HOH . I 5 HOH A 132 732 732 HOH HOH . I 5 HOH A 133 733 733 HOH HOH . I 5 HOH A 134 734 734 HOH HOH . I 5 HOH A 135 735 735 HOH HOH . I 5 HOH A 136 736 736 HOH HOH . I 5 HOH A 137 737 737 HOH HOH . I 5 HOH A 138 738 738 HOH HOH . I 5 HOH A 139 739 739 HOH HOH . I 5 HOH A 140 740 740 HOH HOH . I 5 HOH A 141 741 741 HOH HOH . I 5 HOH A 142 742 742 HOH HOH . I 5 HOH A 143 743 743 HOH HOH . I 5 HOH A 144 744 744 HOH HOH . I 5 HOH A 145 745 745 HOH HOH . I 5 HOH A 146 746 746 HOH HOH . I 5 HOH A 147 747 747 HOH HOH . I 5 HOH A 148 748 748 HOH HOH . I 5 HOH A 149 749 749 HOH HOH . I 5 HOH A 150 750 750 HOH HOH . I 5 HOH A 151 751 751 HOH HOH . I 5 HOH A 152 752 752 HOH HOH . I 5 HOH A 153 753 753 HOH HOH . I 5 HOH A 154 754 754 HOH HOH . I 5 HOH A 155 755 755 HOH HOH . I 5 HOH A 156 756 756 HOH HOH . I 5 HOH A 157 757 757 HOH HOH . I 5 HOH A 158 758 758 HOH HOH . I 5 HOH A 159 759 759 HOH HOH . I 5 HOH A 160 760 760 HOH HOH . I 5 HOH A 161 761 761 HOH HOH . I 5 HOH A 162 762 762 HOH HOH . I 5 HOH A 163 763 763 HOH HOH . I 5 HOH A 164 764 764 HOH HOH . I 5 HOH A 165 765 765 HOH HOH . I 5 HOH A 166 766 766 HOH HOH . I 5 HOH A 167 767 767 HOH HOH . I 5 HOH A 168 768 768 HOH HOH . I 5 HOH A 169 769 769 HOH HOH . I 5 HOH A 170 770 770 HOH HOH . I 5 HOH A 171 771 771 HOH HOH . I 5 HOH A 172 772 772 HOH HOH . I 5 HOH A 173 773 773 HOH HOH . I 5 HOH A 174 774 774 HOH HOH . I 5 HOH A 175 775 775 HOH HOH . I 5 HOH A 176 776 776 HOH HOH . I 5 HOH A 177 777 777 HOH HOH . I 5 HOH A 178 778 778 HOH HOH . I 5 HOH A 179 779 779 HOH HOH . I 5 HOH A 180 780 780 HOH HOH . I 5 HOH A 181 781 781 HOH HOH . I 5 HOH A 182 782 782 HOH HOH . I 5 HOH A 183 783 783 HOH HOH . I 5 HOH A 184 784 784 HOH HOH . I 5 HOH A 185 785 785 HOH HOH . I 5 HOH A 186 786 786 HOH HOH . I 5 HOH A 187 787 787 HOH HOH . I 5 HOH A 188 788 788 HOH HOH . I 5 HOH A 189 789 789 HOH HOH . I 5 HOH A 190 790 790 HOH HOH . I 5 HOH A 191 791 791 HOH HOH . I 5 HOH A 192 792 792 HOH HOH . I 5 HOH A 193 793 793 HOH HOH . I 5 HOH A 194 794 794 HOH HOH . I 5 HOH A 195 795 795 HOH HOH . I 5 HOH A 196 796 796 HOH HOH . I 5 HOH A 197 797 797 HOH HOH . I 5 HOH A 198 798 798 HOH HOH . I 5 HOH A 199 799 799 HOH HOH . I 5 HOH A 200 800 800 HOH HOH . I 5 HOH A 201 801 801 HOH HOH . I 5 HOH A 202 802 802 HOH HOH . I 5 HOH A 203 803 803 HOH HOH . I 5 HOH A 204 804 804 HOH HOH . I 5 HOH A 205 805 805 HOH HOH . I 5 HOH A 206 806 806 HOH HOH . I 5 HOH A 207 807 807 HOH HOH . I 5 HOH A 208 808 808 HOH HOH . I 5 HOH A 209 809 809 HOH HOH . I 5 HOH A 210 810 810 HOH HOH . I 5 HOH A 211 811 811 HOH HOH . I 5 HOH A 212 812 812 HOH HOH . I 5 HOH A 213 813 813 HOH HOH . I 5 HOH A 214 814 814 HOH HOH . I 5 HOH A 215 815 815 HOH HOH . I 5 HOH A 216 816 816 HOH HOH . I 5 HOH A 217 817 817 HOH HOH . I 5 HOH A 218 818 818 HOH HOH . I 5 HOH A 219 819 819 HOH HOH . I 5 HOH A 220 820 820 HOH HOH . I 5 HOH A 221 821 821 HOH HOH . I 5 HOH A 222 822 822 HOH HOH . I 5 HOH A 223 823 823 HOH HOH . I 5 HOH A 224 824 824 HOH HOH . I 5 HOH A 225 825 825 HOH HOH . I 5 HOH A 226 826 826 HOH HOH . I 5 HOH A 227 827 827 HOH HOH . I 5 HOH A 228 828 828 HOH HOH . I 5 HOH A 229 829 829 HOH HOH . I 5 HOH A 230 830 830 HOH HOH . I 5 HOH A 231 831 831 HOH HOH . I 5 HOH A 232 832 832 HOH HOH . I 5 HOH A 233 833 833 HOH HOH . I 5 HOH A 234 834 834 HOH HOH . I 5 HOH A 235 835 835 HOH HOH . I 5 HOH A 236 836 836 HOH HOH . I 5 HOH A 237 837 837 HOH HOH . I 5 HOH A 238 838 838 HOH HOH . I 5 HOH A 239 839 839 HOH HOH . I 5 HOH A 240 840 840 HOH HOH . I 5 HOH A 241 841 841 HOH HOH . I 5 HOH A 242 842 842 HOH HOH . I 5 HOH A 243 843 843 HOH HOH . I 5 HOH A 244 844 844 HOH HOH . I 5 HOH A 245 845 845 HOH HOH . I 5 HOH A 246 846 846 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 248.454 _atom_site.Cartn_y 460.093 _atom_site.Cartn_z 98.345 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #