data_6IPK
#
_model_server_result.job_id            77Z1385qreNWGR8pO8tJwg 
_model_server_result.datetime_utc      '2024-10-19 17:23:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ipk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    6IPK 
#
_exptl.entry_id    6IPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IPK 
_cell.length_a            122.827 
_cell.length_b            122.827 
_cell.length_c            49.859 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 204 A ASP 330 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc2 A OD2 ASP 204 A ASP 330 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc3 A OD2 ASP 206 A ASP 332 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc4 A OD1 ASP 206 A ASP 332 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc5 A OD2 ASP 280 A ASP 418 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc6 B MN MN . A MN 500 1_555 D O1A 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc7 B MN MN . A MN 500 1_555 D O3G 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 B MN MN . A MN 500 1_555 D O1B 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc9 B MN MN . A MN 500 1_555 L O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc10 C MN MN . A MN 501 1_555 D O1A 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc11 C MN MN . A MN 501 1_555 L O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc12 C MN MN . A MN 501 1_555 L O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6IPK 
_atom_sites.fract_transf_matrix[1][1]    0.008142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020057 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 500 500 MN MN . 
C 2 MN A 1 501 501 MN MN . 
D 3 8DG A 1 502 502 8DG 8DG . 
E 4 SO4 A 1 503 503 SO4 SO4 . 
F 4 SO4 A 1 504 504 SO4 SO4 . 
G 4 SO4 A 1 505 505 SO4 SO4 . 
H 4 SO4 A 1 506 506 SO4 SO4 . 
I 4 SO4 A 1 507 507 SO4 SO4 . 
J 4 SO4 A 1 508 508 SO4 SO4 . 
K 5 EPE A 1 509 509 EPE EPE . 
L 6 HOH A 1 601 666 HOH HOH . 
L 6 HOH A 2 602 639 HOH HOH . 
L 6 HOH A 3 603 602 HOH HOH . 
L 6 HOH A 4 604 640 HOH HOH . 
L 6 HOH A 5 605 663 HOH HOH . 
L 6 HOH A 6 606 670 HOH HOH . 
L 6 HOH A 7 607 634 HOH HOH . 
L 6 HOH A 8 608 654 HOH HOH . 
L 6 HOH A 9 609 668 HOH HOH . 
L 6 HOH A 10 610 655 HOH HOH . 
L 6 HOH A 11 611 603 HOH HOH . 
L 6 HOH A 12 612 609 HOH HOH . 
L 6 HOH A 13 613 648 HOH HOH . 
L 6 HOH A 14 614 636 HOH HOH . 
L 6 HOH A 15 615 635 HOH HOH . 
L 6 HOH A 16 616 662 HOH HOH . 
L 6 HOH A 17 617 650 HOH HOH . 
L 6 HOH A 18 618 673 HOH HOH . 
L 6 HOH A 19 619 667 HOH HOH . 
L 6 HOH A 20 620 604 HOH HOH . 
L 6 HOH A 21 621 641 HOH HOH . 
L 6 HOH A 22 622 645 HOH HOH . 
L 6 HOH A 23 623 646 HOH HOH . 
L 6 HOH A 24 624 613 HOH HOH . 
L 6 HOH A 25 625 601 HOH HOH . 
L 6 HOH A 26 626 637 HOH HOH . 
L 6 HOH A 27 627 606 HOH HOH . 
L 6 HOH A 28 628 605 HOH HOH . 
L 6 HOH A 29 629 659 HOH HOH . 
L 6 HOH A 30 630 677 HOH HOH . 
L 6 HOH A 31 631 651 HOH HOH . 
L 6 HOH A 32 632 610 HOH HOH . 
L 6 HOH A 33 633 614 HOH HOH . 
L 6 HOH A 34 634 616 HOH HOH . 
L 6 HOH A 35 635 661 HOH HOH . 
L 6 HOH A 36 636 631 HOH HOH . 
L 6 HOH A 37 637 660 HOH HOH . 
L 6 HOH A 38 638 665 HOH HOH . 
L 6 HOH A 39 639 657 HOH HOH . 
L 6 HOH A 40 640 681 HOH HOH . 
L 6 HOH A 41 641 647 HOH HOH . 
L 6 HOH A 42 642 612 HOH HOH . 
L 6 HOH A 43 643 630 HOH HOH . 
L 6 HOH A 44 644 619 HOH HOH . 
L 6 HOH A 45 645 622 HOH HOH . 
L 6 HOH A 46 646 632 HOH HOH . 
L 6 HOH A 47 647 674 HOH HOH . 
L 6 HOH A 48 648 607 HOH HOH . 
L 6 HOH A 49 649 642 HOH HOH . 
L 6 HOH A 50 650 683 HOH HOH . 
L 6 HOH A 51 651 617 HOH HOH . 
L 6 HOH A 52 652 627 HOH HOH . 
L 6 HOH A 53 653 669 HOH HOH . 
L 6 HOH A 54 654 620 HOH HOH . 
L 6 HOH A 55 655 652 HOH HOH . 
L 6 HOH A 56 656 682 HOH HOH . 
L 6 HOH A 57 657 625 HOH HOH . 
L 6 HOH A 58 658 618 HOH HOH . 
L 6 HOH A 59 659 624 HOH HOH . 
L 6 HOH A 60 660 691 HOH HOH . 
L 6 HOH A 61 661 644 HOH HOH . 
L 6 HOH A 62 662 658 HOH HOH . 
L 6 HOH A 63 663 615 HOH HOH . 
L 6 HOH A 64 664 679 HOH HOH . 
L 6 HOH A 65 665 649 HOH HOH . 
L 6 HOH A 66 666 633 HOH HOH . 
L 6 HOH A 67 667 621 HOH HOH . 
L 6 HOH A 68 668 623 HOH HOH . 
L 6 HOH A 69 669 626 HOH HOH . 
L 6 HOH A 70 670 680 HOH HOH . 
L 6 HOH A 71 671 638 HOH HOH . 
L 6 HOH A 72 672 687 HOH HOH . 
L 6 HOH A 73 673 653 HOH HOH . 
L 6 HOH A 74 674 693 HOH HOH . 
L 6 HOH A 75 675 678 HOH HOH . 
L 6 HOH A 76 676 608 HOH HOH . 
L 6 HOH A 77 677 690 HOH HOH . 
L 6 HOH A 78 678 684 HOH HOH . 
L 6 HOH A 79 679 611 HOH HOH . 
L 6 HOH A 80 680 656 HOH HOH . 
L 6 HOH A 81 681 675 HOH HOH . 
L 6 HOH A 82 682 692 HOH HOH . 
L 6 HOH A 83 683 676 HOH HOH . 
L 6 HOH A 84 684 688 HOH HOH . 
L 6 HOH A 85 685 694 HOH HOH . 
L 6 HOH A 86 686 628 HOH HOH . 
L 6 HOH A 87 687 685 HOH HOH . 
L 6 HOH A 88 688 689 HOH HOH . 
L 6 HOH A 89 689 664 HOH HOH . 
L 6 HOH A 90 690 671 HOH HOH . 
L 6 HOH A 91 691 686 HOH HOH . 
L 6 HOH A 92 692 643 HOH HOH . 
L 6 HOH A 93 693 672 HOH HOH . 
L 6 HOH A 94 694 629 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -0.213 
_atom_site.Cartn_y               -37.585 
_atom_site.Cartn_z               -3.037 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           500 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#