data_6IPK # _model_server_result.job_id lrGRRLKeJeQuyqj2NH4stw _model_server_result.datetime_utc '2024-10-19 17:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ipk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":509}' # _entry.id 6IPK # _exptl.entry_id 6IPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IPK _cell.length_a 122.827 _cell.length_b 122.827 _cell.length_c 49.859 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 204 A ASP 330 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc2 A OD2 ASP 204 A ASP 330 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 A OD2 ASP 206 A ASP 332 1_555 B MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 A OD1 ASP 206 A ASP 332 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 A OD2 ASP 280 A ASP 418 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 B MN MN . A MN 500 1_555 D O1A 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc7 B MN MN . A MN 500 1_555 D O3G 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 B MN MN . A MN 500 1_555 D O1B 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc9 B MN MN . A MN 500 1_555 L O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 C MN MN . A MN 501 1_555 D O1A 8DG . A 8DG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc11 C MN MN . A MN 501 1_555 L O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc12 C MN MN . A MN 501 1_555 L O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 133 n n N1 C6 EPE sing 134 n n N1 C9 EPE sing 135 n n C2 C3 EPE sing 136 n n C2 H21 EPE sing 137 n n C2 H22 EPE sing 138 n n C3 N4 EPE sing 139 n n C3 H31 EPE sing 140 n n C3 H32 EPE sing 141 n n N4 C5 EPE sing 142 n n N4 C7 EPE sing 143 n n C5 C6 EPE sing 144 n n C5 H51 EPE sing 145 n n C5 H52 EPE sing 146 n n C6 H61 EPE sing 147 n n C6 H62 EPE sing 148 n n C7 C8 EPE sing 149 n n C7 H71 EPE sing 150 n n C7 H72 EPE sing 151 n n C8 O8 EPE sing 152 n n C8 H81 EPE sing 153 n n C8 H82 EPE sing 154 n n O8 HO8 EPE sing 155 n n C9 C10 EPE sing 156 n n C9 H91 EPE sing 157 n n C9 H92 EPE sing 158 n n C10 S EPE sing 159 n n C10 H101 EPE sing 160 n n C10 H102 EPE sing 161 n n S O1S EPE doub 162 n n S O2S EPE doub 163 n n S O3S EPE sing 164 n n O3S HOS3 EPE sing 165 n n # _atom_sites.entry_id 6IPK _atom_sites.fract_transf_matrix[1][1] 0.008142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 500 500 MN MN . C 2 MN A 1 501 501 MN MN . D 3 8DG A 1 502 502 8DG 8DG . E 4 SO4 A 1 503 503 SO4 SO4 . F 4 SO4 A 1 504 504 SO4 SO4 . G 4 SO4 A 1 505 505 SO4 SO4 . H 4 SO4 A 1 506 506 SO4 SO4 . I 4 SO4 A 1 507 507 SO4 SO4 . J 4 SO4 A 1 508 508 SO4 SO4 . K 5 EPE A 1 509 509 EPE EPE . L 6 HOH A 1 601 666 HOH HOH . L 6 HOH A 2 602 639 HOH HOH . L 6 HOH A 3 603 602 HOH HOH . L 6 HOH A 4 604 640 HOH HOH . L 6 HOH A 5 605 663 HOH HOH . L 6 HOH A 6 606 670 HOH HOH . L 6 HOH A 7 607 634 HOH HOH . L 6 HOH A 8 608 654 HOH HOH . L 6 HOH A 9 609 668 HOH HOH . L 6 HOH A 10 610 655 HOH HOH . L 6 HOH A 11 611 603 HOH HOH . L 6 HOH A 12 612 609 HOH HOH . L 6 HOH A 13 613 648 HOH HOH . L 6 HOH A 14 614 636 HOH HOH . L 6 HOH A 15 615 635 HOH HOH . L 6 HOH A 16 616 662 HOH HOH . L 6 HOH A 17 617 650 HOH HOH . L 6 HOH A 18 618 673 HOH HOH . L 6 HOH A 19 619 667 HOH HOH . L 6 HOH A 20 620 604 HOH HOH . L 6 HOH A 21 621 641 HOH HOH . L 6 HOH A 22 622 645 HOH HOH . L 6 HOH A 23 623 646 HOH HOH . L 6 HOH A 24 624 613 HOH HOH . L 6 HOH A 25 625 601 HOH HOH . L 6 HOH A 26 626 637 HOH HOH . L 6 HOH A 27 627 606 HOH HOH . L 6 HOH A 28 628 605 HOH HOH . L 6 HOH A 29 629 659 HOH HOH . L 6 HOH A 30 630 677 HOH HOH . L 6 HOH A 31 631 651 HOH HOH . L 6 HOH A 32 632 610 HOH HOH . L 6 HOH A 33 633 614 HOH HOH . L 6 HOH A 34 634 616 HOH HOH . L 6 HOH A 35 635 661 HOH HOH . L 6 HOH A 36 636 631 HOH HOH . L 6 HOH A 37 637 660 HOH HOH . L 6 HOH A 38 638 665 HOH HOH . L 6 HOH A 39 639 657 HOH HOH . L 6 HOH A 40 640 681 HOH HOH . L 6 HOH A 41 641 647 HOH HOH . L 6 HOH A 42 642 612 HOH HOH . L 6 HOH A 43 643 630 HOH HOH . L 6 HOH A 44 644 619 HOH HOH . L 6 HOH A 45 645 622 HOH HOH . L 6 HOH A 46 646 632 HOH HOH . L 6 HOH A 47 647 674 HOH HOH . L 6 HOH A 48 648 607 HOH HOH . L 6 HOH A 49 649 642 HOH HOH . L 6 HOH A 50 650 683 HOH HOH . L 6 HOH A 51 651 617 HOH HOH . L 6 HOH A 52 652 627 HOH HOH . L 6 HOH A 53 653 669 HOH HOH . L 6 HOH A 54 654 620 HOH HOH . L 6 HOH A 55 655 652 HOH HOH . L 6 HOH A 56 656 682 HOH HOH . L 6 HOH A 57 657 625 HOH HOH . L 6 HOH A 58 658 618 HOH HOH . L 6 HOH A 59 659 624 HOH HOH . L 6 HOH A 60 660 691 HOH HOH . L 6 HOH A 61 661 644 HOH HOH . L 6 HOH A 62 662 658 HOH HOH . L 6 HOH A 63 663 615 HOH HOH . L 6 HOH A 64 664 679 HOH HOH . L 6 HOH A 65 665 649 HOH HOH . L 6 HOH A 66 666 633 HOH HOH . L 6 HOH A 67 667 621 HOH HOH . L 6 HOH A 68 668 623 HOH HOH . L 6 HOH A 69 669 626 HOH HOH . L 6 HOH A 70 670 680 HOH HOH . L 6 HOH A 71 671 638 HOH HOH . L 6 HOH A 72 672 687 HOH HOH . L 6 HOH A 73 673 653 HOH HOH . L 6 HOH A 74 674 693 HOH HOH . L 6 HOH A 75 675 678 HOH HOH . L 6 HOH A 76 676 608 HOH HOH . L 6 HOH A 77 677 690 HOH HOH . L 6 HOH A 78 678 684 HOH HOH . L 6 HOH A 79 679 611 HOH HOH . L 6 HOH A 80 680 656 HOH HOH . L 6 HOH A 81 681 675 HOH HOH . L 6 HOH A 82 682 692 HOH HOH . L 6 HOH A 83 683 676 HOH HOH . L 6 HOH A 84 684 688 HOH HOH . L 6 HOH A 85 685 694 HOH HOH . L 6 HOH A 86 686 628 HOH HOH . L 6 HOH A 87 687 685 HOH HOH . L 6 HOH A 88 688 689 HOH HOH . L 6 HOH A 89 689 664 HOH HOH . L 6 HOH A 90 690 671 HOH HOH . L 6 HOH A 91 691 686 HOH HOH . L 6 HOH A 92 692 643 HOH HOH . L 6 HOH A 93 693 672 HOH HOH . L 6 HOH A 94 694 629 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . K 5 -3.673 -24.507 6.303 1 110.95 ? N1 EPE 509 A 1 HETATM 2 C C2 EPE . . . K 5 -4.509 -23.416 6.856 1 110.86 ? C2 EPE 509 A 1 HETATM 3 C C3 EPE . . . K 5 -3.63 -22.394 7.571 1 110.95 ? C3 EPE 509 A 1 HETATM 4 N N4 EPE . . . K 5 -2.855 -23.036 8.651 1 113.36 ? N4 EPE 509 A 1 HETATM 5 C C5 EPE . . . K 5 -2.068 -24.173 8.123 1 113.35 ? C5 EPE 509 A 1 HETATM 6 C C6 EPE . . . K 5 -2.974 -25.184 7.419 1 112.72 ? C6 EPE 509 A 1 HETATM 7 C C7 EPE . . . K 5 -1.979 -22.038 9.304 1 111.87 ? C7 EPE 509 A 1 HETATM 8 C C8 EPE . . . K 5 -2.111 -22.142 10.82 1 111.44 ? C8 EPE 509 A 1 HETATM 9 O O8 EPE . . . K 5 -1.001 -22.876 11.345 1 108.34 ? O8 EPE 509 A 1 HETATM 10 C C9 EPE . . . K 5 -4.326 -25.474 5.371 1 108.73 ? C9 EPE 509 A 1 HETATM 11 C C10 EPE . . . K 5 -5.86 -25.437 5.195 1 108.86 ? C10 EPE 509 A 1 HETATM 12 S S EPE . . . K 5 -6.652 -26.904 5.333 1 109.42 ? S EPE 509 A 1 HETATM 13 O O1S EPE . . . K 5 -5.833 -27.928 6.021 1 110.91 ? O1S EPE 509 A 1 HETATM 14 O O2S EPE . . . K 5 -7.034 -27.4 3.99 1 107.7 ? O2S EPE 509 A 1 HETATM 15 O O3S EPE . . . K 5 -7.881 -26.679 6.125 1 105.62 ? O3S EPE 509 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #