data_6IQ5
#
_model_server_result.job_id            HR0WayDUbK8DpUKIPskl8g 
_model_server_result.datetime_utc      '2024-11-21 17:53:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6iq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    6IQ5 
#
_exptl.entry_id    6IQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IQ5 
_cell.length_a            135.19 
_cell.length_b            135.19 
_cell.length_c            302.17 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 403 A CYS 470 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc2 B SG CYS 403 B CYS 470 1_555 E FE HEM . B HEM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 173 n n 
CHA C4D HEM doub 174 n n 
CHA HHA HEM sing 175 n n 
CHB C4A HEM sing 176 n n 
CHB C1B HEM doub 177 n n 
CHB HHB HEM sing 178 n n 
CHC C4B HEM sing 179 n n 
CHC C1C HEM doub 180 n n 
CHC HHC HEM sing 181 n n 
CHD C4C HEM doub 182 n n 
CHD C1D HEM sing 183 n n 
CHD HHD HEM sing 184 n n 
C1A C2A HEM doub 185 n y 
C1A NA HEM sing 186 n y 
C2A C3A HEM sing 187 n y 
C2A CAA HEM sing 188 n n 
C3A C4A HEM doub 189 n y 
C3A CMA HEM sing 190 n n 
C4A NA HEM sing 191 n y 
CMA HMA HEM sing 192 n n 
CMA HMAA HEM sing 193 n n 
CMA HMAB HEM sing 194 n n 
CAA CBA HEM sing 195 n n 
CAA HAA HEM sing 196 n n 
CAA HAAA HEM sing 197 n n 
CBA CGA HEM sing 198 n n 
CBA HBA HEM sing 199 n n 
CBA HBAA HEM sing 200 n n 
CGA O1A HEM doub 201 n n 
CGA O2A HEM sing 202 n n 
C1B C2B HEM sing 203 n n 
C1B NB HEM sing 204 n n 
C2B C3B HEM doub 205 n n 
C2B CMB HEM sing 206 n n 
C3B C4B HEM sing 207 n n 
C3B CAB HEM sing 208 n n 
C4B NB HEM doub 209 n n 
CMB HMB HEM sing 210 n n 
CMB HMBA HEM sing 211 n n 
CMB HMBB HEM sing 212 n n 
CAB CBB HEM doub 213 n n 
CAB HAB HEM sing 214 n n 
CBB HBB HEM sing 215 n n 
CBB HBBA HEM sing 216 n n 
C1C C2C HEM sing 217 n y 
C1C NC HEM sing 218 n y 
C2C C3C HEM doub 219 n y 
C2C CMC HEM sing 220 n n 
C3C C4C HEM sing 221 n y 
C3C CAC HEM sing 222 n n 
C4C NC HEM sing 223 n y 
CMC HMC HEM sing 224 n n 
CMC HMCA HEM sing 225 n n 
CMC HMCB HEM sing 226 n n 
CAC CBC HEM doub 227 n n 
CAC HAC HEM sing 228 n n 
CBC HBC HEM sing 229 n n 
CBC HBCA HEM sing 230 n n 
C1D C2D HEM sing 231 n n 
C1D ND HEM doub 232 n n 
C2D C3D HEM doub 233 n n 
C2D CMD HEM sing 234 n n 
C3D C4D HEM sing 235 n n 
C3D CAD HEM sing 236 n n 
C4D ND HEM sing 237 n n 
CMD HMD HEM sing 238 n n 
CMD HMDA HEM sing 239 n n 
CMD HMDB HEM sing 240 n n 
CAD CBD HEM sing 241 n n 
CAD HAD HEM sing 242 n n 
CAD HADA HEM sing 243 n n 
CBD CGD HEM sing 244 n n 
CBD HBD HEM sing 245 n n 
CBD HBDA HEM sing 246 n n 
CGD O1D HEM doub 247 n n 
CGD O2D HEM sing 248 n n 
O2A H2A HEM sing 249 n n 
O2D H2D HEM sing 250 n n 
FE NA HEM sing 251 n n 
FE NB HEM sing 252 n n 
FE NC HEM sing 253 n n 
FE ND HEM sing 254 n n 
#
_atom_sites.entry_id                     6IQ5 
_atom_sites.fract_transf_matrix[1][1]    0.007397 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003309 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 901 901 HEM HEM . 
D 3 AQ0 A 1 902 1 AQ0 C4N . 
E 2 HEM B 1 900 900 HEM HEM . 
F 4 HOH A 1 1001 6 HOH HOH . 
F 4 HOH A 2 1002 7 HOH HOH . 
G 4 HOH B 1 1001 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 20.17 -45.036 -16.904 1 493.24 ? CHA HEM 901 A 1 
HETATM 2 C CHB HEM . . . C 2 19.869 -41.227 -19.832 1 496.96 ? CHB HEM 901 A 1 
HETATM 3 C CHC HEM . . . C 2 24.706 -41.053 -20.052 1 486.73 ? CHC HEM 901 A 1 
HETATM 4 C CHD HEM . . . C 2 25.032 -44.803 -17.056 1 490.72 ? CHD HEM 901 A 1 
HETATM 5 C C1A HEM . . . C 2 19.666 -44.019 -17.682 1 494.43 ? C1A HEM 901 A 1 
HETATM 6 C C2A HEM . . . C 2 18.285 -43.809 -17.951 1 493.76 ? C2A HEM 901 A 1 
HETATM 7 C C3A HEM . . . C 2 18.206 -42.733 -18.785 1 494.2 ? C3A HEM 901 A 1 
HETATM 8 C C4A HEM . . . C 2 19.528 -42.276 -19.014 1 494.27 ? C4A HEM 901 A 1 
HETATM 9 C CMA HEM . . . C 2 16.939 -42.104 -19.324 1 493.36 ? CMA HEM 901 A 1 
HETATM 10 C CAA HEM . . . C 2 17.11 -44.628 -17.436 1 494.79 ? CAA HEM 901 A 1 
HETATM 11 C CBA HEM . . . C 2 16.472 -44.026 -16.189 1 497.19 ? CBA HEM 901 A 1 
HETATM 12 C CGA HEM . . . C 2 15.359 -44.869 -15.593 1 501.18 ? CGA HEM 901 A 1 
HETATM 13 O O1A HEM . . . C 2 14.681 -44.406 -14.648 1 499.8 ? O1A HEM 901 A 1 
HETATM 14 O O2A HEM . . . C 2 15.073 -46.013 -16.021 1 508.64 ? O2A HEM 901 A 1 
HETATM 15 C C1B HEM . . . C 2 21.186 -40.865 -20.15 1 491.5 ? C1B HEM 901 A 1 
HETATM 16 C C2B HEM . . . C 2 21.493 -39.771 -21.006 1 488.75 ? C2B HEM 901 A 1 
HETATM 17 C C3B HEM . . . C 2 22.857 -39.711 -21.099 1 486.68 ? C3B HEM 901 A 1 
HETATM 18 C C4B HEM . . . C 2 23.351 -40.808 -20.242 1 487.67 ? C4B HEM 901 A 1 
HETATM 19 C CMB HEM . . . C 2 20.493 -38.874 -21.699 1 490.05 ? CMB HEM 901 A 1 
HETATM 20 C CAB HEM . . . C 2 23.749 -38.752 -21.802 1 487.7 ? CAB HEM 901 A 1 
HETATM 21 C CBB HEM . . . C 2 23.382 -37.605 -22.358 1 489.41 ? CBB HEM 901 A 1 
HETATM 22 C C1C HEM . . . C 2 25.224 -42.038 -19.247 1 482.67 ? C1C HEM 901 A 1 
HETATM 23 C C2C HEM . . . C 2 26.581 -42.289 -19.04 1 481.43 ? C2C HEM 901 A 1 
HETATM 24 C C3C HEM . . . C 2 26.709 -43.389 -18.227 1 483.65 ? C3C HEM 901 A 1 
HETATM 25 C C4C HEM . . . C 2 25.371 -43.754 -17.87 1 489.58 ? C4C HEM 901 A 1 
HETATM 26 C CMC HEM . . . C 2 27.73 -41.509 -19.597 1 483.62 ? CMC HEM 901 A 1 
HETATM 27 C CAC HEM . . . C 2 27.989 -43.766 -17.596 1 478.52 ? CAC HEM 901 A 1 
HETATM 28 C CBC HEM . . . C 2 28.049 -43.382 -16.313 1 475.85 ? CBC HEM 901 A 1 
HETATM 29 C C1D HEM . . . C 2 23.704 -45.152 -16.798 1 486.33 ? C1D HEM 901 A 1 
HETATM 30 C C2D HEM . . . C 2 23.376 -46.277 -15.917 1 484.57 ? C2D HEM 901 A 1 
HETATM 31 C C3D HEM . . . C 2 22.039 -46.324 -15.892 1 484.36 ? C3D HEM 901 A 1 
HETATM 32 C C4D HEM . . . C 2 21.537 -45.245 -16.738 1 488.83 ? C4D HEM 901 A 1 
HETATM 33 C CMD HEM . . . C 2 24.294 -47.223 -15.171 1 486 ? CMD HEM 901 A 1 
HETATM 34 C CAD HEM . . . C 2 21.212 -47.302 -15.124 1 478.36 ? CAD HEM 901 A 1 
HETATM 35 C CBD HEM . . . C 2 20.799 -46.627 -13.825 1 474.72 ? CBD HEM 901 A 1 
HETATM 36 C CGD HEM . . . C 2 19.824 -47.512 -13.133 1 475.65 ? CGD HEM 901 A 1 
HETATM 37 O O1D HEM . . . C 2 19.23 -48.387 -13.781 1 474.91 ? O1D HEM 901 A 1 
HETATM 38 O O2D HEM . . . C 2 19.585 -47.383 -11.929 1 487.32 ? O2D HEM 901 A 1 
HETATM 39 N NA HEM . . . C 2 20.412 -43.087 -18.367 1 490.99 ? NA HEM 901 A 1 
HETATM 40 N NB HEM . . . C 2 22.307 -41.441 -19.713 1 485.86 ? NB HEM 901 A 1 
HETATM 41 N NC HEM . . . C 2 24.493 -42.936 -18.547 1 487.3 ? NC HEM 901 A 1 
HETATM 42 N ND HEM . . . C 2 22.573 -44.565 -17.254 1 489.53 ? ND HEM 901 A 1 
HETATM 43 FE FE HEM . . . C 2 22.399 -43.101 -18.426 1 484.81 ? FE HEM 901 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#