data_6IQ5
#
_model_server_result.job_id            Ekr4GzSorriP3JfeUtYbqg 
_model_server_result.datetime_utc      '2024-11-21 17:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6iq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":902}' 
#
_entry.id    6IQ5 
#
_exptl.entry_id    6IQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              319.357 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(cis-4-azidocyclohexyl)-4H-naphtho[1,2-b]pyran-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IQ5 
_cell.length_a            135.19 
_cell.length_b            135.19 
_cell.length_c            302.17 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 403 A CYS 470 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc2 B SG CYS 403 B CYS 470 1_555 E FE HEM . B HEM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'C19 H17 N3 O2' 
_chem_comp.formula_weight    319.357 
_chem_comp.id                AQ0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(cis-4-azidocyclohexyl)-4H-naphtho[1,2-b]pyran-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C5 AQ0 doub 13 n y 
C C1 AQ0 sing 14 n y 
C5 C4 AQ0 sing 15 n y 
C1 C2 AQ0 doub 16 n y 
C4 C3 AQ0 doub 17 n y 
C2 C3 AQ0 sing 18 n y 
C2 C6 AQ0 sing 19 n y 
C3 C9 AQ0 sing 20 n y 
N2 N1 AQ0 doub 21 n n 
C6 C7 AQ0 doub 22 n y 
N1 N AQ0 doub 23 n n 
C9 O AQ0 sing 24 n n 
C9 C8 AQ0 doub 25 n y 
O C12 AQ0 sing 26 n n 
C14 C15 AQ0 sing 27 n n 
C14 C13 AQ0 sing 28 n n 
C15 C16 AQ0 sing 29 n n 
N C16 AQ0 sing 30 n n 
C7 C8 AQ0 sing 31 n y 
C8 C10 AQ0 sing 32 n n 
C16 C17 AQ0 sing 33 n n 
C12 C13 AQ0 sing 34 n n 
C12 C11 AQ0 doub 35 n n 
C17 C18 AQ0 sing 36 n n 
C13 C18 AQ0 sing 37 n n 
C10 C11 AQ0 sing 38 n n 
C10 O1 AQ0 doub 39 n n 
C1 H1 AQ0 sing 40 n n 
C13 H2 AQ0 sing 41 n n 
C14 H3 AQ0 sing 42 n n 
C14 H4 AQ0 sing 43 n n 
C15 H5 AQ0 sing 44 n n 
C15 H6 AQ0 sing 45 n n 
C16 H7 AQ0 sing 46 n n 
C4 H8 AQ0 sing 47 n n 
C6 H9 AQ0 sing 48 n n 
C17 H10 AQ0 sing 49 n n 
C17 H11 AQ0 sing 50 n n 
C18 H12 AQ0 sing 51 n n 
C18 H13 AQ0 sing 52 n n 
C5 H15 AQ0 sing 53 n n 
C H16 AQ0 sing 54 n n 
C11 H17 AQ0 sing 55 n n 
C7 H18 AQ0 sing 56 n n 
#
_atom_sites.entry_id                     6IQ5 
_atom_sites.fract_transf_matrix[1][1]    0.007397 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003309 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 901 901 HEM HEM . 
D 3 AQ0 A 1 902 1 AQ0 C4N . 
E 2 HEM B 1 900 900 HEM HEM . 
F 4 HOH A 1 1001 6 HOH HOH . 
F 4 HOH A 2 1002 7 HOH HOH . 
G 4 HOH B 1 1001 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AQ0 . . . D 3 25.891 -53.179 -25.746 1 496.14 ? C1 AQ0 902 A 1 
HETATM 2 C C2 AQ0 . . . D 3 25.457 -52.798 -24.483 1 499.45 ? C2 AQ0 902 A 1 
HETATM 3 C C3 AQ0 . . . D 3 24.729 -51.513 -24.338 1 498.49 ? C3 AQ0 902 A 1 
HETATM 4 C C9 AQ0 . . . D 3 24.274 -51.125 -22.98 1 502.15 ? C9 AQ0 902 A 1 
HETATM 5 C C10 AQ0 . . . D 3 24.106 -51.621 -20.531 1 505.84 ? C10 AQ0 902 A 1 
HETATM 6 C C13 AQ0 . . . D 3 22.437 -48.312 -21.295 1 501.11 ? C13 AQ0 902 A 1 
HETATM 7 C C14 AQ0 . . . D 3 22.537 -47.478 -22.573 1 501.39 ? C14 AQ0 902 A 1 
HETATM 8 C C15 AQ0 . . . D 3 21.721 -46.183 -22.529 1 500.46 ? C15 AQ0 902 A 1 
HETATM 9 C C16 AQ0 . . . D 3 20.578 -46.166 -21.511 1 509.07 ? C16 AQ0 902 A 1 
HETATM 10 C C4 AQ0 . . . D 3 24.497 -50.721 -25.453 1 493.93 ? C4 AQ0 902 A 1 
HETATM 11 C C6 AQ0 . . . D 3 25.695 -53.6 -23.368 1 503.15 ? C6 AQ0 902 A 1 
HETATM 12 C C17 AQ0 . . . D 3 19.962 -47.555 -21.362 1 510.61 ? C17 AQ0 902 A 1 
HETATM 13 C C18 AQ0 . . . D 3 20.98 -48.618 -20.941 1 500.88 ? C18 AQ0 902 A 1 
HETATM 14 N N2 AQ0 . . . D 3 19.549 -43.565 -23.839 1 557.16 ? N2 AQ0 902 A 1 
HETATM 15 N N1 AQ0 . . . D 3 19.545 -44.463 -22.982 1 541.8 ? N1 AQ0 902 A 1 
HETATM 16 N N AQ0 . . . D 3 19.532 -45.36 -22.124 1 524.75 ? N AQ0 902 A 1 
HETATM 17 C C12 AQ0 . . . D 3 23.169 -49.589 -21.477 1 505.4 ? C12 AQ0 902 A 1 
HETATM 18 O O AQ0 . . . D 3 23.594 -49.961 -22.729 1 504.99 ? O AQ0 902 A 1 
HETATM 19 C C5 AQ0 . . . D 3 24.954 -51.149 -26.697 1 493.13 ? C5 AQ0 902 A 1 
HETATM 20 C C AQ0 . . . D 3 25.637 -52.355 -26.839 1 493.34 ? C AQ0 902 A 1 
HETATM 21 C C11 AQ0 . . . D 3 23.422 -50.415 -20.383 1 506.79 ? C11 AQ0 902 A 1 
HETATM 22 O O1 AQ0 . . . D 3 24.322 -52.343 -19.534 1 505.26 ? O1 AQ0 902 A 1 
HETATM 23 C C8 AQ0 . . . D 3 24.578 -52.046 -21.868 1 504.56 ? C8 AQ0 902 A 1 
HETATM 24 C C7 AQ0 . . . D 3 25.267 -53.236 -22.089 1 503.74 ? C7 AQ0 902 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#