data_6IRW # _model_server_result.job_id zBT8XldMF7bp01j9kt6brQ _model_server_result.datetime_utc '2025-01-03 00:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6irw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6IRW # _exptl.entry_id 6IRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IRW _cell.length_a 70.215 _cell.length_b 120.379 _cell.length_c 156.946 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6IRW _atom_sites.fract_transf_matrix[1][1] 0.014242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 701 1 SAH SAH . D 2 SAH B 1 701 2 SAH SAH . E 3 HOH A 1 801 14 HOH HOH . E 3 HOH A 2 802 4 HOH HOH . E 3 HOH A 3 803 10 HOH HOH . E 3 HOH A 4 804 5 HOH HOH . E 3 HOH A 5 805 25 HOH HOH . E 3 HOH A 6 806 19 HOH HOH . E 3 HOH A 7 807 11 HOH HOH . E 3 HOH A 8 808 16 HOH HOH . E 3 HOH A 9 809 24 HOH HOH . E 3 HOH A 10 810 26 HOH HOH . F 3 HOH B 1 801 13 HOH HOH . F 3 HOH B 2 802 1 HOH HOH . F 3 HOH B 3 803 7 HOH HOH . F 3 HOH B 4 804 3 HOH HOH . F 3 HOH B 5 805 8 HOH HOH . F 3 HOH B 6 806 21 HOH HOH . F 3 HOH B 7 807 9 HOH HOH . F 3 HOH B 8 808 2 HOH HOH . F 3 HOH B 9 809 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 2 -34.827 -7.248 -38.369 1 36.85 ? N SAH 701 B 1 HETATM 2 C CA SAH . . . D 2 -34.276 -8.485 -37.838 1 35.83 ? CA SAH 701 B 1 HETATM 3 C CB SAH . . . D 2 -34.465 -8.534 -36.327 1 34.16 ? CB SAH 701 B 1 HETATM 4 C CG SAH . . . D 2 -35.912 -8.576 -35.845 1 35.42 ? CG SAH 701 B 1 HETATM 5 S SD SAH . . . D 2 -36.003 -8.544 -34.035 1 41.58 ? SD SAH 701 B 1 HETATM 6 C C SAH . . . D 2 -34.92 -9.696 -38.504 1 34.67 ? C SAH 701 B 1 HETATM 7 O O SAH . . . D 2 -36.017 -9.607 -39.053 1 32.6 ? O SAH 701 B 1 HETATM 8 O OXT SAH . . . D 2 -34.359 -10.791 -38.514 1 32.74 ? OXT SAH 701 B 1 HETATM 9 C C5' SAH . . . D 2 -37.656 -7.81 -34.068 1 34.54 ? C5' SAH 701 B 1 HETATM 10 C C4' SAH . . . D 2 -37.633 -6.301 -34.268 1 36.49 ? C4' SAH 701 B 1 HETATM 11 O O4' SAH . . . D 2 -38.951 -5.839 -34.467 1 38.16 ? O4' SAH 701 B 1 HETATM 12 C C3' SAH . . . D 2 -37.091 -5.538 -33.067 1 39.6 ? C3' SAH 701 B 1 HETATM 13 O O3' SAH . . . D 2 -35.913 -4.855 -33.433 1 39.25 ? O3' SAH 701 B 1 HETATM 14 C C2' SAH . . . D 2 -38.163 -4.523 -32.724 1 37.69 ? C2' SAH 701 B 1 HETATM 15 O O2' SAH . . . D 2 -37.597 -3.253 -32.504 1 40.73 ? O2' SAH 701 B 1 HETATM 16 C C1' SAH . . . D 2 -39.039 -4.524 -33.965 1 39.41 ? C1' SAH 701 B 1 HETATM 17 N N9 SAH . . . D 2 -40.434 -4.141 -33.693 1 40.77 ? N9 SAH 701 B 1 HETATM 18 C C8 SAH . . . D 2 -41.062 -4.054 -32.48 1 41.74 ? C8 SAH 701 B 1 HETATM 19 N N7 SAH . . . D 2 -42.338 -3.658 -32.694 1 40.95 ? N7 SAH 701 B 1 HETATM 20 C C5 SAH . . . D 2 -42.532 -3.492 -34.023 1 41.73 ? C5 SAH 701 B 1 HETATM 21 C C6 SAH . . . D 2 -43.632 -3.106 -34.78 1 42.15 ? C6 SAH 701 B 1 HETATM 22 N N6 SAH . . . D 2 -44.788 -2.813 -34.195 1 40.26 ? N6 SAH 701 B 1 HETATM 23 N N1 SAH . . . D 2 -43.521 -3.026 -36.153 1 43.06 ? N1 SAH 701 B 1 HETATM 24 C C2 SAH . . . D 2 -42.324 -3.33 -36.765 1 42.63 ? C2 SAH 701 B 1 HETATM 25 N N3 SAH . . . D 2 -41.237 -3.712 -36.006 1 37.81 ? N3 SAH 701 B 1 HETATM 26 C C4 SAH . . . D 2 -41.338 -3.79 -34.659 1 38.77 ? C4 SAH 701 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #