data_6IS6 # _model_server_result.job_id dmIfBEVJSGOR0XZTNuTJ4Q _model_server_result.datetime_utc '2024-11-24 03:41:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6is6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 6IS6 # _exptl.entry_id 6IS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IS6 _cell.length_a 51.98 _cell.length_b 109.35 _cell.length_c 107.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 53.96 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 244 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 238 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id N _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 313 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.248 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 341 n n C1 C6 RET sing 342 n n C1 C16 RET sing 343 n n C1 C17 RET sing 344 n n C2 C3 RET sing 345 n n C2 H21 RET sing 346 n n C2 H22 RET sing 347 n n C3 C4 RET sing 348 n n C3 H31 RET sing 349 n n C3 H32 RET sing 350 n n C4 C5 RET sing 351 n n C4 H41 RET sing 352 n n C4 H42 RET sing 353 n n C5 C6 RET doub 354 n n C5 C18 RET sing 355 n n C6 C7 RET sing 356 n n C7 C8 RET doub 357 e n C7 H7 RET sing 358 n n C8 C9 RET sing 359 n n C8 H8 RET sing 360 n n C9 C10 RET doub 361 e n C9 C19 RET sing 362 n n C10 C11 RET sing 363 n n C10 H10 RET sing 364 n n C11 C12 RET doub 365 e n C11 H11 RET sing 366 n n C12 C13 RET sing 367 n n C12 H12 RET sing 368 n n C13 C14 RET doub 369 e n C13 C20 RET sing 370 n n C14 C15 RET sing 371 n n C14 H14 RET sing 372 n n C15 O1 RET doub 373 n n C15 H15 RET sing 374 n n C16 H161 RET sing 375 n n C16 H162 RET sing 376 n n C16 H163 RET sing 377 n n C17 H171 RET sing 378 n n C17 H172 RET sing 379 n n C17 H173 RET sing 380 n n C18 H181 RET sing 381 n n C18 H182 RET sing 382 n n C18 H183 RET sing 383 n n C19 H191 RET sing 384 n n C19 H192 RET sing 385 n n C19 H193 RET sing 386 n n C20 H201 RET sing 387 n n C20 H202 RET sing 388 n n C20 H203 RET sing 389 n n # _atom_sites.entry_id 6IS6 _atom_sites.fract_transf_matrix[1][1] 0.019238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 301 301 OLC OLC . C 2 OLC A 1 302 401 OLC OLC . D 2 OLC A 1 303 501 OLC OLC . E 2 OLC A 1 304 601 OLC OLC . F 2 OLC A 1 305 701 OLC OLC . G 2 OLC A 1 306 801 OLC OLC . H 2 OLC A 1 307 901 OLC OLC . I 2 OLC A 1 308 1001 OLC OLC . J 2 OLC A 1 309 1101 OLC OLC . K 2 OLC A 1 310 1201 OLC OLC . L 2 OLC A 1 311 1301 OLC OLC . M 2 OLC A 1 312 1401 OLC OLC . N 3 RET A 1 313 1501 RET RET . O 2 OLC A 1 314 101 OLC OLC . P 2 OLC A 1 315 102 OLC OLC . Q 4 HOH A 1 401 8 HOH HOH . Q 4 HOH A 2 402 40 HOH HOH . Q 4 HOH A 3 403 11 HOH HOH . Q 4 HOH A 4 404 14 HOH HOH . Q 4 HOH A 5 405 7 HOH HOH . Q 4 HOH A 6 406 9 HOH HOH . Q 4 HOH A 7 407 10 HOH HOH . Q 4 HOH A 8 408 5 HOH HOH . Q 4 HOH A 9 409 12 HOH HOH . Q 4 HOH A 10 410 22 HOH HOH . Q 4 HOH A 11 411 4 HOH HOH . Q 4 HOH A 12 412 25 HOH HOH . Q 4 HOH A 13 413 2 HOH HOH . Q 4 HOH A 14 414 39 HOH HOH . Q 4 HOH A 15 415 13 HOH HOH . Q 4 HOH A 16 416 1 HOH HOH . Q 4 HOH A 17 417 16 HOH HOH . Q 4 HOH A 18 418 34 HOH HOH . Q 4 HOH A 19 419 3 HOH HOH . Q 4 HOH A 20 420 21 HOH HOH . Q 4 HOH A 21 421 15 HOH HOH . Q 4 HOH A 22 422 19 HOH HOH . Q 4 HOH A 23 423 20 HOH HOH . Q 4 HOH A 24 424 6 HOH HOH . Q 4 HOH A 25 425 30 HOH HOH . Q 4 HOH A 26 426 18 HOH HOH . Q 4 HOH A 27 427 26 HOH HOH . Q 4 HOH A 28 428 23 HOH HOH . Q 4 HOH A 29 429 24 HOH HOH . Q 4 HOH A 30 430 41 HOH HOH . Q 4 HOH A 31 431 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . N 3 2.17 -21.704 16.516 1 31.63 ? C1 RET 313 A 1 HETATM 2 C C2 RET . . . N 3 2.719 -20.737 17.571 1 32.03 ? C2 RET 313 A 1 HETATM 3 C C3 RET . . . N 3 4.181 -20.809 17.771 1 34.5 ? C3 RET 313 A 1 HETATM 4 C C4 RET . . . N 3 4.547 -22.235 18.134 1 30.99 ? C4 RET 313 A 1 HETATM 5 C C5 RET . . . N 3 4.085 -23.195 17.081 1 28.67 ? C5 RET 313 A 1 HETATM 6 C C6 RET . . . N 3 2.933 -23.022 16.399 1 31.39 ? C6 RET 313 A 1 HETATM 7 C C7 RET . . . N 3 2.484 -24.082 15.506 1 26.38 ? C7 RET 313 A 1 HETATM 8 C C8 RET . . . N 3 1.31 -24.176 14.806 1 27.64 ? C8 RET 313 A 1 HETATM 9 C C9 RET . . . N 3 0.919 -25.259 14.012 1 24.8 ? C9 RET 313 A 1 HETATM 10 C C10 RET . . . N 3 -0.326 -25.309 13.352 1 24.03 ? C10 RET 313 A 1 HETATM 11 C C11 RET . . . N 3 -0.823 -26.291 12.503 1 25.03 ? C11 RET 313 A 1 HETATM 12 C C12 RET . . . N 3 -2.061 -26.265 11.881 1 28.16 ? C12 RET 313 A 1 HETATM 13 C C13 RET . . . N 3 -2.711 -27.245 11.104 1 25.91 ? C13 RET 313 A 1 HETATM 14 C C14 RET . . . N 3 -4.029 -27.028 10.672 1 22.14 ? C14 RET 313 A 1 HETATM 15 C C15 RET . . . N 3 -4.952 -27.935 10.039 1 26.84 ? C15 RET 313 A 1 HETATM 16 C C16 RET . . . N 3 0.702 -21.926 16.919 1 24.56 ? C16 RET 313 A 1 HETATM 17 C C17 RET . . . N 3 2.192 -20.976 15.16 1 27.26 ? C17 RET 313 A 1 HETATM 18 C C18 RET . . . N 3 5.039 -24.336 16.866 1 32.62 ? C18 RET 313 A 1 HETATM 19 C C19 RET . . . N 3 1.832 -26.408 13.826 1 25.4 ? C19 RET 313 A 1 HETATM 20 C C20 RET . . . N 3 -1.934 -28.473 10.772 1 23.62 ? C20 RET 313 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #