data_6ISG # _model_server_result.job_id ODxdzn-MuDJtoK5K7rJTbQ _model_server_result.datetime_utc '2024-10-19 20:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6isg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 6ISG # _exptl.entry_id 6ISG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ISG _cell.length_a 208.078 _cell.length_b 208.078 _cell.length_c 208.078 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ISG _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 428 A CYS 428 1_555 A SG CYS 442 A CYS 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 506 A CYS 506 1_555 A SG CYS 509 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C OP2 DG 4 D DG 4 1_555 I CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? hydrog WATSON-CRICK hydrog1 B N3 DC 2 C DC -11 1_555 C N1 DG 16 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 2 C DC -11 1_555 C O6 DG 16 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 2 C DC -11 1_555 C N2 DG 16 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog4 B N2 DG 3 C DG -10 1_555 C O2 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog5 B N2 DG 4 C DG -9 1_555 C O2 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 5 C DA -8 1_555 C N3 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 5 C DA -8 1_555 C O4 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DC 6 C DC -7 1_555 C N1 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 DC 6 C DC -7 1_555 C O6 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 DC 6 C DC -7 1_555 C N2 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog11 B N3 DT 7 C DT -6 1_555 C N1 DA 11 D DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog12 B N1 DG 8 C DG -5 1_555 C O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog13 B N2 DG 8 C DG -5 1_555 C O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 9 C DC -4 1_555 C N1 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 9 C DC -4 1_555 C O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 9 C DC -4 1_555 C N2 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 10 C DT -3 1_555 C N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 10 C DT -3 1_555 C N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 11 C DT -2 1_555 C N1 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 11 C DT -2 1_555 C N6 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DA 12 C DA -1 1_555 C N3 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N6 DA 12 C DA -1 1_555 C O4 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 13 C DC 0 1_555 C N1 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 13 C DC 0 1_555 C O6 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 13 C DC 0 1_555 C N2 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N3 DC 14 C DC 1 1_555 C N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N4 DC 14 C DC 1 1_555 C O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O2 DC 14 C DC 1 1_555 C N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N1 DG 15 C DG 2 1_555 C N3 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N2 DG 15 C DG 2 1_555 C O2 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O6 DG 15 C DG 2 1_555 C N4 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 409 n n O11 H11 PPV sing 410 n n P1 O21 PPV sing 411 n n P1 O31 PPV doub 412 n n P1 OPP PPV sing 413 n n O21 H21 PPV sing 414 n n OPP P2 PPV sing 415 n n P2 O12 PPV sing 416 n n P2 O22 PPV doub 417 n n P2 O32 PPV sing 418 n n O12 H12 PPV sing 419 n n O32 H32 PPV sing 420 n n # _atom_sites.entry_id 6ISG _atom_sites.fract_transf_matrix[1][1] 0.004806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PPV A 1 801 1 PPV PPV . E 5 CA A 1 802 1 CA CA . F 5 CA A 1 803 2 CA CA . G 5 CA A 1 804 3 CA CA . H 5 CA A 1 805 5 CA CA . I 5 CA D 1 101 4 CA CA . J 6 HOH A 1 901 52 HOH HOH . J 6 HOH A 2 902 30 HOH HOH . J 6 HOH A 3 903 10 HOH HOH . J 6 HOH A 4 904 29 HOH HOH . J 6 HOH A 5 905 53 HOH HOH . J 6 HOH A 6 906 44 HOH HOH . J 6 HOH A 7 907 47 HOH HOH . J 6 HOH A 8 908 43 HOH HOH . J 6 HOH A 9 909 9 HOH HOH . J 6 HOH A 10 910 56 HOH HOH . J 6 HOH A 11 911 42 HOH HOH . J 6 HOH A 12 912 6 HOH HOH . J 6 HOH A 13 913 7 HOH HOH . J 6 HOH A 14 914 23 HOH HOH . J 6 HOH A 15 915 22 HOH HOH . J 6 HOH A 16 916 32 HOH HOH . J 6 HOH A 17 917 11 HOH HOH . J 6 HOH A 18 918 2 HOH HOH . J 6 HOH A 19 919 34 HOH HOH . J 6 HOH A 20 920 12 HOH HOH . J 6 HOH A 21 921 8 HOH HOH . J 6 HOH A 22 922 24 HOH HOH . J 6 HOH A 23 923 31 HOH HOH . J 6 HOH A 24 924 49 HOH HOH . J 6 HOH A 25 925 28 HOH HOH . K 6 HOH C 1 101 37 HOH HOH . L 6 HOH D 1 201 5 HOH HOH . L 6 HOH D 2 202 4 HOH HOH . L 6 HOH D 3 203 55 HOH HOH . L 6 HOH D 4 204 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . . . D 4 23.119 -45.399 -70.243 1 190.42 ? O11 PPV 801 A 1 HETATM 2 P P1 PPV . . . D 4 22.756 -43.974 -70.578 1 191.42 ? P1 PPV 801 A 1 HETATM 3 O O21 PPV . . . D 4 23.478 -42.97 -69.712 1 191.15 ? O21 PPV 801 A 1 HETATM 4 O O31 PPV . . . D 4 22.883 -43.67 -72.051 1 190.25 ? O31 PPV 801 A 1 HETATM 5 O OPP PPV . . . D 4 21.187 -43.821 -70.231 1 195.43 ? OPP PPV 801 A 1 HETATM 6 P P2 PPV . . . D 4 20.393 -43.351 -68.906 1 200.73 ? P2 PPV 801 A 1 HETATM 7 O O12 PPV . . . D 4 21.319 -43.621 -67.744 1 200.8 ? O12 PPV 801 A 1 HETATM 8 O O22 PPV . . . D 4 20.107 -41.881 -69.093 1 203.15 ? O22 PPV 801 A 1 HETATM 9 O O32 PPV . . . D 4 19.138 -44.187 -68.857 1 198.92 ? O32 PPV 801 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 602 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 9 #